View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9463_low_32 (Length: 216)

Name: NF9463_low_32
Description: NF9463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9463_low_32
NF9463_low_32
[»] chr7 (6 HSPs)
chr7 (1-209)||(31691097-31691293)
chr7 (29-68)||(42656459-42656498)
chr7 (35-68)||(2999141-2999174)
chr7 (29-66)||(28178913-28178950)
chr7 (14-68)||(12110292-12110343)
chr7 (36-68)||(39591554-39591586)
[»] chr2 (7 HSPs)
chr2 (26-67)||(33197327-33197368)
chr2 (29-68)||(17952788-17952827)
chr2 (29-68)||(31461382-31461421)
chr2 (29-68)||(32098395-32098434)
chr2 (21-68)||(40837515-40837562)
chr2 (36-68)||(29633023-29633055)
chr2 (36-68)||(33576681-33576713)
[»] chr5 (11 HSPs)
chr5 (35-68)||(10280663-10280696)
chr5 (29-68)||(7096214-7096253)
chr5 (29-68)||(37063161-37063200)
chr5 (36-109)||(912696-912768)
chr5 (35-68)||(10303751-10303784)
chr5 (35-68)||(14295456-14295489)
chr5 (35-68)||(28586853-28586886)
chr5 (35-68)||(35095870-35095903)
chr5 (36-68)||(29117017-29117049)
chr5 (35-67)||(29590828-29590860)
chr5 (36-68)||(35135749-35135781)
[»] chr1 (7 HSPs)
chr1 (35-68)||(39777613-39777646)
chr1 (26-68)||(46499941-46499983)
chr1 (29-67)||(50319236-50319274)
chr1 (36-68)||(14737792-14737824)
chr1 (36-68)||(15360845-15360877)
chr1 (36-68)||(36641826-36641858)
chr1 (36-68)||(49517021-49517053)
[»] chr3 (5 HSPs)
chr3 (28-68)||(49587003-49587043)
chr3 (29-68)||(1395615-1395654)
chr3 (29-67)||(905058-905096)
chr3 (36-68)||(26990685-26990717)
chr3 (36-68)||(54775079-54775111)
[»] scaffold0590 (1 HSPs)
scaffold0590 (29-68)||(1161-1200)
[»] scaffold0275 (1 HSPs)
scaffold0275 (29-68)||(2775-2814)
[»] chr8 (9 HSPs)
chr8 (29-68)||(14482146-14482185)
chr8 (29-68)||(31915356-31915395)
chr8 (29-68)||(39392748-39392787)
chr8 (36-70)||(29699205-29699239)
chr8 (36-68)||(8799356-8799388)
chr8 (36-68)||(11119086-11119118)
chr8 (36-68)||(26820150-26820182)
chr8 (36-68)||(40728505-40728537)
chr8 (30-70)||(44348432-44348472)
[»] chr4 (8 HSPs)
chr4 (29-64)||(30338683-30338718)
chr4 (29-68)||(51044546-51044585)
chr4 (37-67)||(9319283-9319313)
chr4 (30-68)||(10192229-10192267)
chr4 (35-68)||(4071832-4071865)
chr4 (35-68)||(20936089-20936122)
chr4 (14-64)||(6364081-6364128)
chr4 (36-68)||(19422369-19422401)
[»] chr6 (4 HSPs)
chr6 (26-67)||(281936-281977)
chr6 (35-68)||(30865432-30865465)
chr6 (36-68)||(5328925-5328957)
chr6 (36-68)||(24836286-24836318)


Alignment Details
Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 31691293 - 31691097
Alignment:
Q  1 taaacaacttaattaagcacttatgatctataacctatttctataacaaaagatagaataaagtcaaaattcgattccacatgagctataagttgttttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||            ||||||||||||||||||||||||||||||||||||||    
T  31691293 taaacaacttaattaagcacttatgatctataacctatttctagaacaaa------------gtcaaaattcgattccacatgagctataagttgttttt 31691206  T
Q  101 ataatctattctagaaagcttgtggnnnnnnntctgaacttaccgctgagaaatccgcctcgaagtctatctgagttttcttcaatgaagaactatcagc 200  Q
    |||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31691205 ataatctattctagaaagcttgtggaaaaaaatctgaacttaccgctgagaaatccgcctcgaagtctatctgagttttcttcaatgaagaactatcagc 31691106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 42656459 - 42656498
Alignment:
Q  29 tataacctatttctataacaaaagatagaataaagtcaaa 68  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  42656459 tataagctatttctataacaaaagataaaataaagtcaaa 42656498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 2999141 - 2999174
Alignment:
Q  35 ctatttctataacaaaagatagaataaagtcaaa 68  Q
    ||||||||||||||||||||| ||||||||||||    
T  2999141 ctatttctataacaaaagataaaataaagtcaaa 2999174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 28178913 - 28178950
Alignment:
Q  29 tataacctatttctataacaaaagatagaataaagtca 66  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  28178913 tataagctatttctataacaaaagataaaataaagtca 28178950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 12110292 - 12110343
Alignment:
Q  14 taagcacttatgatctataacctatttctataacaaaagatagaataaagtcaaa 68  Q
    |||||||||||||   ||||||||||||||| ||| |||||| ||||||||||||    
T  12110292 taagcacttatga---ataacctatttctattacacaagataaaataaagtcaaa 12110343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 39591586 - 39591554
Alignment:
Q  36 tatttctataacaaaagatagaataaagtcaaa 68  Q
    |||||||||||||||||||| ||||||||||||    
T  39591586 tatttctataacaaaagataaaataaagtcaaa 39591554  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 33197368 - 33197327
Alignment:
Q  26 atctataacctatttctataacaaaagatagaataaagtcaa 67  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  33197368 atctataagctatttctataacaaaagatagaataaagtcaa 33197327  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 17952827 - 17952788
Alignment:
Q  29 tataacctatttctataacaaaagatagaataaagtcaaa 68  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  17952827 tataagctatttctataacaaaagataaaataaagtcaaa 17952788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 31461382 - 31461421
Alignment:
Q  29 tataacctatttctataacaaaagatagaataaagtcaaa 68  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  31461382 tataagctatttctataacaaaagataaaataaagtcaaa 31461421  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 32098434 - 32098395
Alignment:
Q  29 tataacctatttctataacaaaagatagaataaagtcaaa 68  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  32098434 tataagctatttctataacaaaagataaaataaagtcaaa 32098395  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 40837562 - 40837515
Alignment:
Q  21 ttatgatctataacctatttctataacaaaagatagaataaagtcaaa 68  Q
    ||||||| ||||| ||||||||||||||||||||| | ||||||||||    
T  40837562 ttatgatgtataagctatttctataacaaaagataaattaaagtcaaa 40837515  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 29633023 - 29633055
Alignment:
Q  36 tatttctataacaaaagatagaataaagtcaaa 68  Q
    |||||||||||||||| ||||||||||||||||    
T  29633023 tatttctataacaaaaaatagaataaagtcaaa 29633055  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 33576713 - 33576681
Alignment:
Q  36 tatttctataacaaaagatagaataaagtcaaa 68  Q
    |||||||||||||||||||| ||||||||||||    
T  33576713 tatttctataacaaaagatacaataaagtcaaa 33576681  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 10280696 - 10280663
Alignment:
Q  35 ctatttctataacaaaagatagaataaagtcaaa 68  Q
    ||||||||||||||||||||||||||||||||||    
T  10280696 ctatttctataacaaaagatagaataaagtcaaa 10280663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 7096253 - 7096214
Alignment:
Q  29 tataacctatttctataacaaaagatagaataaagtcaaa 68  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  7096253 tataagctatttctataacaaaagataaaataaagtcaaa 7096214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 37063200 - 37063161
Alignment:
Q  29 tataacctatttctataacaaaagatagaataaagtcaaa 68  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  37063200 tataaactatttctataacaaaagataaaataaagtcaaa 37063161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 912768 - 912696
Alignment:
Q  36 tatttctataacaaaagatagaataaagtcaaaattcgattccacatgagctataagttgtttttataatctat 109  Q
    ||||||||||||| || ||| ||||||||||||||| | || || || ||| ||||||||||||||||| ||||    
T  912768 tatttctataacacaatataaaataaagtcaaaatt-gttttcatataagcaataagttgtttttataaactat 912696  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 10303751 - 10303784
Alignment:
Q  35 ctatttctataacaaaagatagaataaagtcaaa 68  Q
    ||||||||||||||||||||| ||||||||||||    
T  10303751 ctatttctataacaaaagataaaataaagtcaaa 10303784  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 14295456 - 14295489
Alignment:
Q  35 ctatttctataacaaaagatagaataaagtcaaa 68  Q
    ||||||||||||||||||||| ||||||||||||    
T  14295456 ctatttctataacaaaagataaaataaagtcaaa 14295489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 28586886 - 28586853
Alignment:
Q  35 ctatttctataacaaaagatagaataaagtcaaa 68  Q
    ||||||||||||||||||||| ||||||||||||    
T  28586886 ctatttctataacaaaagataaaataaagtcaaa 28586853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 35095903 - 35095870
Alignment:
Q  35 ctatttctataacaaaagatagaataaagtcaaa 68  Q
    ||||||||||||||||||||| ||||||||||||    
T  35095903 ctatttctataacaaaagataaaataaagtcaaa 35095870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 29117049 - 29117017
Alignment:
Q  36 tatttctataacaaaagatagaataaagtcaaa 68  Q
    |||||||||||||||||||| ||||||||||||    
T  29117049 tatttctataacaaaagataaaataaagtcaaa 29117017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 67
Target Start/End: Complemental strand, 29590860 - 29590828
Alignment:
Q  35 ctatttctataacaaaagatagaataaagtcaa 67  Q
    ||||||||||||||||||||| |||||||||||    
T  29590860 ctatttctataacaaaagataaaataaagtcaa 29590828  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 35135781 - 35135749
Alignment:
Q  36 tatttctataacaaaagatagaataaagtcaaa 68  Q
    |||||||||||||||||||| ||||||||||||    
T  35135781 tatttctataacaaaagataaaataaagtcaaa 35135749  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 39777613 - 39777646
Alignment:
Q  35 ctatttctataacaaaagatagaataaagtcaaa 68  Q
    ||||||||||||||||||||||||||||||||||    
T  39777613 ctatttctataacaaaagatagaataaagtcaaa 39777646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 46499983 - 46499941
Alignment:
Q  26 atctataacctatttctataacaaaagatagaataaagtcaaa 68  Q
    |||||||| |||||||||||| |||||||| ||||||||||||    
T  46499983 atctataagctatttctataagaaaagataaaataaagtcaaa 46499941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 50319236 - 50319274
Alignment:
Q  29 tataacctatttctataacaaaagatagaataaagtcaa 67  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  50319236 tataagctatttctataacaaaagataaaataaagtcaa 50319274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 14737824 - 14737792
Alignment:
Q  36 tatttctataacaaaagatagaataaagtcaaa 68  Q
    |||||||||||||||||||| ||||||||||||    
T  14737824 tatttctataacaaaagataaaataaagtcaaa 14737792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 15360845 - 15360877
Alignment:
Q  36 tatttctataacaaaagatagaataaagtcaaa 68  Q
    |||||||||||||||||||| ||||||||||||    
T  15360845 tatttctataacaaaagataaaataaagtcaaa 15360877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 36641826 - 36641858
Alignment:
Q  36 tatttctataacaaaagatagaataaagtcaaa 68  Q
    |||||||||||||||||||| ||||||||||||    
T  36641826 tatttctataacaaaagataaaataaagtcaaa 36641858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 49517021 - 49517053
Alignment:
Q  36 tatttctataacaaaagatagaataaagtcaaa 68  Q
    |||||||||||||||||||| ||||||||||||    
T  49517021 tatttctataacaaaagataaaataaagtcaaa 49517053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 49587043 - 49587003
Alignment:
Q  28 ctataacctatttctataacaaaagatagaataaagtcaaa 68  Q
    |||||| ||||||||||||||||||||| ||||||||||||    
T  49587043 ctataagctatttctataacaaaagataaaataaagtcaaa 49587003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 1395615 - 1395654
Alignment:
Q  29 tataacctatttctataacaaaagatagaataaagtcaaa 68  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  1395615 tataagctatttctataacaaaagataaaataaagtcaaa 1395654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 905096 - 905058
Alignment:
Q  29 tataacctatttctataacaaaagatagaataaagtcaa 67  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  905096 tataagctatttctataacaaaagataaaataaagtcaa 905058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 26990685 - 26990717
Alignment:
Q  36 tatttctataacaaaagatagaataaagtcaaa 68  Q
    |||||||||||||||||||| ||||||||||||    
T  26990685 tatttctataacaaaagataaaataaagtcaaa 26990717  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 54775079 - 54775111
Alignment:
Q  36 tatttctataacaaaagatagaataaagtcaaa 68  Q
    |||||||||||||||||||| ||||||||||||    
T  54775079 tatttctataacaaaagataaaataaagtcaaa 54775111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 1200 - 1161
Alignment:
Q  29 tataacctatttctataacaaaagatagaataaagtcaaa 68  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  1200 tataagctatttctataacaaaagataaaataaagtcaaa 1161  T

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Target: scaffold0275 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 2775 - 2814
Alignment:
Q  29 tataacctatttctataacaaaagatagaataaagtcaaa 68  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  2775 tataagctatttctataacaaaagataaaataaagtcaaa 2814  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 14482146 - 14482185
Alignment:
Q  29 tataacctatttctataacaaaagatagaataaagtcaaa 68  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  14482146 tataaactatttctataacaaaagataaaataaagtcaaa 14482185  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 31915395 - 31915356
Alignment:
Q  29 tataacctatttctataacaaaagatagaataaagtcaaa 68  Q
    ||||| |||| |||||||||||||||||||||||||||||    
T  31915395 tataagctatatctataacaaaagatagaataaagtcaaa 31915356  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 39392787 - 39392748
Alignment:
Q  29 tataacctatttctataacaaaagatagaataaagtcaaa 68  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  39392787 tataaactatttctataacaaaagataaaataaagtcaaa 39392748  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 70
Target Start/End: Original strand, 29699205 - 29699239
Alignment:
Q  36 tatttctataacaaaagatagaataaagtcaaaat 70  Q
    |||||||||||||||||||| ||||||||||||||    
T  29699205 tatttctataacaaaagataaaataaagtcaaaat 29699239  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 8799356 - 8799388
Alignment:
Q  36 tatttctataacaaaagatagaataaagtcaaa 68  Q
    |||||||||||||||||||| ||||||||||||    
T  8799356 tatttctataacaaaagataaaataaagtcaaa 8799388  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 11119118 - 11119086
Alignment:
Q  36 tatttctataacaaaagatagaataaagtcaaa 68  Q
    |||||||||||||||||||| ||||||||||||    
T  11119118 tatttctataacaaaagataaaataaagtcaaa 11119086  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 26820150 - 26820182
Alignment:
Q  36 tatttctataacaaaagatagaataaagtcaaa 68  Q
    |||||||||||||||||||| ||||||||||||    
T  26820150 tatttctataacaaaagataaaataaagtcaaa 26820182  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 40728537 - 40728505
Alignment:
Q  36 tatttctataacaaaagatagaataaagtcaaa 68  Q
    |||||||||||||||||||| ||||||||||||    
T  40728537 tatttctataacaaaagataaaataaagtcaaa 40728505  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 44348432 - 44348472
Alignment:
Q  30 ataacctatttctataacaaaagatagaataaagtcaaaat 70  Q
    |||| ||||||||||||||||||||  ||||||||||||||    
T  44348432 ataagctatttctataacaaaagatgtaataaagtcaaaat 44348472  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 64
Target Start/End: Complemental strand, 30338718 - 30338683
Alignment:
Q  29 tataacctatttctataacaaaagatagaataaagt 64  Q
    ||||| ||||||||||||||||||||||||||||||    
T  30338718 tataaactatttctataacaaaagatagaataaagt 30338683  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 51044585 - 51044546
Alignment:
Q  29 tataacctatttctataacaaaagatagaataaagtcaaa 68  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  51044585 tataagctatttctataacaaaagataaaataaagtcaaa 51044546  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 67
Target Start/End: Complemental strand, 9319313 - 9319283
Alignment:
Q  37 atttctataacaaaagatagaataaagtcaa 67  Q
    |||||||||||||||||||||||||||||||    
T  9319313 atttctataacaaaagatagaataaagtcaa 9319283  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 10192229 - 10192267
Alignment:
Q  30 ataacctatttctataacaaaagatagaataaagtcaaa 68  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  10192229 ataaactatttttataacaaaagatagaataaagtcaaa 10192267  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 4071832 - 4071865
Alignment:
Q  35 ctatttctataacaaaagatagaataaagtcaaa 68  Q
    ||||||||||||||||||||| ||||||||||||    
T  4071832 ctatttctataacaaaagataaaataaagtcaaa 4071865  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 20936122 - 20936089
Alignment:
Q  35 ctatttctataacaaaagatagaataaagtcaaa 68  Q
    ||||||||||||||||||||| ||||||||||||    
T  20936122 ctatttctataacaaaagataaaataaagtcaaa 20936089  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 6364081 - 6364128
Alignment:
Q  14 taagcacttatgatctataacctatttctataacaaaagatagaataaagt 64  Q
    ||||||||||||   ||||| ||||||||||||||||||||| ||||||||    
T  6364081 taagcacttatg---tataagctatttctataacaaaagataaaataaagt 6364128  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 19422369 - 19422401
Alignment:
Q  36 tatttctataacaaaagatagaataaagtcaaa 68  Q
    |||||||||||||||||||| ||||||||||||    
T  19422369 tatttctataacaaaagatataataaagtcaaa 19422401  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 281977 - 281936
Alignment:
Q  26 atctataacctatttctataacaaaagatagaataaagtcaa 67  Q
    |||||||| ||||| ||||||||||||||| |||||||||||    
T  281977 atctataagctattcctataacaaaagataaaataaagtcaa 281936  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 30865432 - 30865465
Alignment:
Q  35 ctatttctataacaaaagatagaataaagtcaaa 68  Q
    ||||||||||||||||||||| ||||||||||||    
T  30865432 ctatttctataacaaaagataaaataaagtcaaa 30865465  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 5328925 - 5328957
Alignment:
Q  36 tatttctataacaaaagatagaataaagtcaaa 68  Q
    |||||||||||||||||||| ||||||||||||    
T  5328925 tatttctataacaaaagataaaataaagtcaaa 5328957  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 24836318 - 24836286
Alignment:
Q  36 tatttctataacaaaagatagaataaagtcaaa 68  Q
    |||||||||||||||||||| ||||||||||||    
T  24836318 tatttctataacaaaagataaaataaagtcaaa 24836286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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