View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9463_low_33 (Length: 211)

Name: NF9463_low_33
Description: NF9463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9463_low_33
NF9463_low_33
[»] chr1 (20 HSPs)
chr1 (13-194)||(32088553-32088735)
chr1 (40-167)||(18325394-18325527)
chr1 (44-178)||(39289272-39289409)
chr1 (84-174)||(20026216-20026307)
chr1 (139-178)||(15478108-15478147)
chr1 (40-172)||(6021749-6021884)
chr1 (128-172)||(37131879-37131923)
chr1 (83-163)||(48635242-48635322)
chr1 (139-178)||(6041631-6041670)
chr1 (128-178)||(14515379-14515430)
chr1 (128-175)||(15452428-15452475)
chr1 (143-178)||(26439807-26439842)
chr1 (128-178)||(9939824-9939874)
chr1 (128-178)||(20720755-20720805)
chr1 (132-178)||(24587848-24587894)
chr1 (128-174)||(37523006-37523052)
chr1 (130-175)||(8381926-8381971)
chr1 (130-183)||(47322004-47322057)
chr1 (43-119)||(213054-213130)
chr1 (128-172)||(18325187-18325231)
[»] chr2 (18 HSPs)
chr2 (43-178)||(33502856-33502995)
chr2 (128-172)||(7630361-7630405)
chr2 (40-172)||(44439195-44439334)
chr2 (130-187)||(43501073-43501130)
chr2 (130-178)||(9943362-9943410)
chr2 (45-178)||(37561646-37561782)
chr2 (93-172)||(32827457-32827537)
chr2 (147-183)||(36979326-36979362)
chr2 (99-178)||(3476496-3476578)
chr2 (130-184)||(15928532-15928586)
chr2 (40-120)||(9943403-9943486)
chr2 (130-175)||(15220933-15220978)
chr2 (110-173)||(1976942-1977006)
chr2 (93-172)||(2002756-2002835)
chr2 (109-184)||(7630093-7630168)
chr2 (93-172)||(11510898-11510978)
chr2 (128-172)||(44148518-44148562)
chr2 (82-118)||(44810374-44810410)
[»] chr4 (22 HSPs)
chr4 (40-178)||(33560575-33560717)
chr4 (34-172)||(25318992-25319134)
chr4 (40-184)||(11271543-11271691)
chr4 (82-172)||(54705440-54705531)
chr4 (44-172)||(22683808-22683940)
chr4 (98-166)||(8330066-8330135)
chr4 (130-174)||(29728945-29728989)
chr4 (128-178)||(2635102-2635152)
chr4 (82-167)||(18596989-18597075)
chr4 (82-183)||(46344882-46344982)
chr4 (128-177)||(30472874-30472923)
chr4 (128-183)||(35064997-35065052)
chr4 (128-178)||(13947787-13947837)
chr4 (128-178)||(26617723-26617773)
chr4 (149-178)||(31013850-31013879)
chr4 (111-178)||(45329785-45329854)
chr4 (128-172)||(1099781-1099825)
chr4 (128-172)||(20712595-20712639)
chr4 (128-172)||(22250171-22250215)
chr4 (106-175)||(23335332-23335405)
chr4 (130-178)||(42152979-42153027)
chr4 (130-178)||(49138933-49138981)
[»] chr6 (21 HSPs)
chr6 (82-178)||(33141756-33141853)
chr6 (93-178)||(5724691-5724776)
chr6 (99-178)||(29240518-29240598)
chr6 (82-178)||(33136533-33136629)
chr6 (130-178)||(6653748-6653796)
chr6 (101-168)||(33997147-33997215)
chr6 (130-169)||(18690620-18690659)
chr6 (128-178)||(26550458-26550508)
chr6 (98-155)||(35098240-35098297)
chr6 (82-178)||(4910847-4910943)
chr6 (84-172)||(6654142-6654230)
chr6 (130-178)||(7280429-7280477)
chr6 (130-174)||(25196026-25196070)
chr6 (93-166)||(2234274-2234348)
chr6 (130-184)||(25195462-25195516)
chr6 (98-178)||(6544564-6544645)
chr6 (98-178)||(30926844-30926925)
chr6 (128-172)||(26550517-26550561)
chr6 (128-172)||(26550570-26550614)
chr6 (128-172)||(26550623-26550667)
chr6 (146-178)||(31305964-31305996)
[»] chr3 (15 HSPs)
chr3 (99-174)||(33548186-33548262)
chr3 (103-178)||(52925681-52925757)
chr3 (93-183)||(48089449-48089540)
chr3 (102-178)||(39256614-39256691)
chr3 (126-174)||(2410024-2410072)
chr3 (130-178)||(3845210-3845258)
chr3 (93-195)||(41115114-41115215)
chr3 (130-178)||(54596757-54596805)
chr3 (110-178)||(38022376-38022444)
chr3 (128-175)||(47356341-47356388)
chr3 (128-178)||(44958702-44958752)
chr3 (93-173)||(43987612-43987693)
chr3 (112-172)||(48410891-48410952)
chr3 (83-120)||(49634090-49634127)
chr3 (128-172)||(21513425-21513469)
[»] chr7 (22 HSPs)
chr7 (128-187)||(12306664-12306723)
chr7 (99-172)||(45004965-45005038)
chr7 (128-183)||(12306911-12306966)
chr7 (130-176)||(48158832-48158878)
chr7 (80-152)||(40422757-40422830)
chr7 (98-170)||(45369109-45369182)
chr7 (128-176)||(48253107-48253155)
chr7 (84-174)||(41386867-41386957)
chr7 (98-167)||(42668048-42668118)
chr7 (128-178)||(45004924-45004974)
chr7 (132-177)||(6996475-6996520)
chr7 (130-175)||(48917465-48917510)
chr7 (128-172)||(15050237-15050281)
chr7 (144-183)||(41841097-41841136)
chr7 (130-172)||(17111820-17111862)
chr7 (93-178)||(21436060-21436146)
chr7 (128-170)||(29829452-29829494)
chr7 (128-178)||(36270919-36270969)
chr7 (110-174)||(5489923-5489988)
chr7 (128-177)||(22310762-22310811)
chr7 (128-173)||(48290335-48290380)
chr7 (93-176)||(47306739-47306823)
[»] chr5 (24 HSPs)
chr5 (40-178)||(42439622-42439764)
chr5 (99-173)||(11132852-11132927)
chr5 (82-178)||(1105378-1105475)
chr5 (99-176)||(40247355-40247432)
chr5 (102-172)||(10898667-10898738)
chr5 (98-169)||(33608450-33608523)
chr5 (99-178)||(29922833-29922913)
chr5 (130-174)||(38592173-38592217)
chr5 (130-184)||(7637479-7637534)
chr5 (132-175)||(36928015-36928058)
chr5 (128-174)||(38045392-38045438)
chr5 (98-178)||(10957400-10957480)
chr5 (130-178)||(39097203-39097251)
chr5 (101-167)||(29922576-29922643)
chr5 (40-75)||(37886043-37886078)
chr5 (93-178)||(11648021-11648106)
chr5 (34-76)||(37882727-37882769)
chr5 (84-183)||(9449266-9449367)
chr5 (128-177)||(43012677-43012726)
chr5 (128-172)||(2973352-2973396)
chr5 (128-184)||(4848237-4848293)
chr5 (40-76)||(7925430-7925466)
chr5 (93-172)||(27374352-27374431)
chr5 (130-178)||(34250449-34250497)
[»] scaffold0393 (1 HSPs)
scaffold0393 (99-167)||(12373-12442)
[»] chr8 (15 HSPs)
chr8 (40-172)||(32927837-32927972)
chr8 (102-178)||(37061404-37061481)
chr8 (128-169)||(29979513-29979554)
chr8 (98-165)||(32056316-32056384)
chr8 (129-172)||(4336346-4336389)
chr8 (113-183)||(5859145-5859216)
chr8 (128-163)||(7533751-7533786)
chr8 (130-177)||(15677896-15677943)
chr8 (128-175)||(41614786-41614833)
chr8 (36-122)||(1836213-1836302)
chr8 (128-178)||(4554273-4554323)
chr8 (99-172)||(11038127-11038201)
chr8 (82-167)||(39648389-39648475)
chr8 (99-178)||(35495199-35495278)
chr8 (129-177)||(39648242-39648290)
[»] scaffold0168 (1 HSPs)
scaffold0168 (82-178)||(31765-31861)
[»] scaffold0024 (1 HSPs)
scaffold0024 (82-183)||(23643-23744)
[»] scaffold0314 (1 HSPs)
scaffold0314 (110-174)||(17076-17141)
[»] scaffold0360 (1 HSPs)
scaffold0360 (130-178)||(13289-13337)


Alignment Details
Target: chr1 (Bit Score: 159; Significance: 7e-85; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 32088553 - 32088735
Alignment:
Q  13 tatggtggtttatgtttgaacacgtagaagtgagttgaacaataaatttcactgtaaaaatca-ttttactcaaaagcttgaaatcctagcttcaagtta 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||| ||||||||||||||||||||    
T  32088553 tatggtggtttatgtttgaacacgtagaagtgagttgaacaataaatttcagtgtaaaaatcacttttaatcaaaagctcgaaatcctagcttcaagtta 32088652  T
Q  112 gaatcaattttgtaggaaaatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacacgtccaggattaacttt 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  32088653 gaatcaattttgtaggaaaatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacacgtccagaattaacttt 32088735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 40 - 167
Target Start/End: Original strand, 18325394 - 18325527
Alignment:
Q  40 aagtgagttgaacaataaatttcactgtaaaaatcatttt---actcaaaagcttgaaatcctagcttcaagttagaatcaattttgtagg-aaaatcaa 135  Q
    ||||||| |||||| ||||||| | |||||||||||  ||   |||||||||| | ||||||||||||||||||||| | || |||| ||| ||||||||    
T  18325394 aagtgagatgaacagtaaattttaatgtaaaaatcacatttagactcaaaagcatcaaatcctagcttcaagttagagttaactttggaggcaaaatcaa 18325493  T
Q  136 ttctact--tgagagcaaccaaacatgtcaaaat 167  Q
    |||||||   ||||||||||||||||| ||||||    
T  18325494 ttctactcgagagagcaaccaaacatggcaaaat 18325527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 44 - 178
Target Start/End: Original strand, 39289272 - 39289409
Alignment:
Q  44 gagttgaacaataaatttcactgtaaaaatca---ttttactcaaaagcttgaaatcctagcttcaagttagaatcaattttgtagg-aaaatcaattct 139  Q
    ||||||||| |||| ||||| |||||||||||   ||| |||||||||||  || | |||||||||||||||||||||||||| ||| |  ||||||| |    
T  39289272 gagttgaacgataagtttcagtgtaaaaatcacgttttgactcaaaagctaaaagttctagcttcaagttagaatcaattttggaggtactatcaattgt 39289371  T
Q  140 acttgagagcaaccaaacatgtcaaaatcaattttacac 178  Q
    || |||| ||||||| | ||| |||||||||||||||||    
T  39289372 ac-tgagggcaaccatatatggcaaaatcaattttacac 39289409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 174
Target Start/End: Original strand, 20026216 - 20026307
Alignment:
Q  84 aaaagcttgaaatcctagcttcaagttagaatcaattttgtagg--aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaatttt 174  Q
    ||||||||||| | |||||||||||| |||||||||| || | |  |||||||||| || |||||| ||||||||||||||| ||||||||||    
T  20026216 aaaagcttgaatttctagcttcaagt-agaatcaattgtggaagtcaaaatcaattataattgagaacaaccaaacatgtcagaatcaatttt 20026307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 178
Target Start/End: Original strand, 15478108 - 15478147
Alignment:
Q  139 tacttgagagcaaccaaacatgtcaaaatcaattttacac 178  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  15478108 tacttgagagcaaccaaacatgtcaaaatcaattctacac 15478147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 172
Target Start/End: Complemental strand, 6021884 - 6021749
Alignment:
Q  40 aagtgagttgaacaataaatttcactgtaaaaatc-attttac--tcaaaagcttgaaatcctagcttcaagttagaatcaattttgtagg-aaaatcaa 135  Q
    ||||||||||||| ||||| || | |||||||||| ||| ||   |||||||||  | ||||||||||||||| |||||| ||| |  ||| ||||||||    
T  6021884 aagtgagttgaaccataaacttgagtgtaaaaatctattatagaatcaaaagctacatatcctagcttcaagt-agaatcgattctagaggcaaaatcaa 6021786  T
Q  136 ttctacttgagagcaaccaaacatgtcaaaatcaatt 172  Q
    |||||||||| | ||| ||||| ||||||||||||||    
T  6021785 ttctacttgaaatcaatcaaacttgtcaaaatcaatt 6021749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 37131923 - 37131879
Alignment:
Q  128 aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaatt 172  Q
    |||||||| |||||| ||||||||||||||||| |||||||||||    
T  37131923 aaaatcaaatctactcgagagcaaccaaacatgccaaaatcaatt 37131879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 163
Target Start/End: Original strand, 48635242 - 48635322
Alignment:
Q  83 caaaagcttgaaatcctagcttcaagttagaatcaattttgtaggaaaatcaattctacttgagagcaaccaaacatgtca 163  Q
    ||||||||| |||| ||||  | ||||||||||||||| ||  | |||| ||||||||||||||| || ||||||||||||    
T  48635242 caaaagcttcaaattctaggctgaagttagaatcaattatgaggcaaaaccaattctacttgagaacatccaaacatgtca 48635322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 178
Target Start/End: Complemental strand, 6041670 - 6041631
Alignment:
Q  139 tacttgagagcaaccaaacatgtcaaaatcaattttacac 178  Q
    ||||| ||||||||||||||| ||||||||||||||||||    
T  6041670 tacttaagagcaaccaaacatatcaaaatcaattttacac 6041631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 178
Target Start/End: Original strand, 14515379 - 14515430
Alignment:
Q  128 aaaatcaattctacttgagagcaaccaaacatgtc-aaaatcaattttacac 178  Q
    ||||||||||||||| |||||||| ||||||| || ||||||||||||||||    
T  14515379 aaaatcaattctactcgagagcaatcaaacatatcaaaaatcaattttacac 14515430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 175
Target Start/End: Complemental strand, 15452475 - 15452428
Alignment:
Q  128 aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaatttta 175  Q
    ||||||||||||||| |||| || ||||| ||||||||||||||||||    
T  15452475 aaaatcaattctactcgagaacatccaaagatgtcaaaatcaatttta 15452428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 178
Target Start/End: Complemental strand, 26439842 - 26439807
Alignment:
Q  143 tgagagcaaccaaacatgtcaaaatcaattttacac 178  Q
    ||||||||| ||||||||||||||||||||||||||    
T  26439842 tgagagcaatcaaacatgtcaaaatcaattttacac 26439807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 178
Target Start/End: Original strand, 9939824 - 9939874
Alignment:
Q  128 aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacac 178  Q
    |||||||||| ||||  |||| |||||||||||||||||| ||||||||||    
T  9939824 aaaatcaattatactctagaggaaccaaacatgtcaaaattaattttacac 9939874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 178
Target Start/End: Complemental strand, 20720805 - 20720755
Alignment:
Q  128 aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacac 178  Q
    ||||| |||||||||| || | ||||||||||||||||||||||| |||||    
T  20720805 aaaattaattctactttagggaaaccaaacatgtcaaaatcaattctacac 20720755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 24587894 - 24587848
Alignment:
Q  132 tcaattctacttgagagcaaccaaacatgtcaaaatcaattttacac 178  Q
    |||||||||||  ||||||||||||||||||| |||||||| |||||    
T  24587894 tcaattctactcaagagcaaccaaacatgtcacaatcaattctacac 24587848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 174
Target Start/End: Original strand, 37523006 - 37523052
Alignment:
Q  128 aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaatttt 174  Q
    |||||||||||||||  ||||||| ||||||||||| ||||||||||    
T  37523006 aaaatcaattctactccagagcaatcaaacatgtcataatcaatttt 37523052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 175
Target Start/End: Complemental strand, 8381971 - 8381926
Alignment:
Q  130 aatcaattctacttgagagcaaccaaacatgtcaaaatcaatttta 175  Q
    |||||||||| |||  ||| ||||||||||||||||||||||||||    
T  8381971 aatcaattctgcttttgaggaaccaaacatgtcaaaatcaatttta 8381926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 47322004 - 47322057
Alignment:
Q  130 aatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacacgtcca 183  Q
    ||||||||||||| || | |||| ||||||||||||||||||| ||||| ||||    
T  47322004 aatcaattctactcgacaacaacaaaacatgtcaaaatcaattctacacctcca 47322057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 119
Target Start/End: Original strand, 213054 - 213130
Alignment:
Q  43 tgagttgaacaataaatttcactgtaaaaatcattttactcaaaagcttgaaatcctagcttcaagttagaatcaat 119  Q
    ||||||||||||||||||| | |||||||| ||||  |  ||||||||  || || ||| |||||||||||||||||    
T  213054 tgagttgaacaataaatttgagtgtaaaaaccattggatgcaaaagctacaattcttaggttcaagttagaatcaat 213130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 18325187 - 18325231
Alignment:
Q  128 aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaatt 172  Q
    ||||||||||||||| ||||  | |||||||||||||||||||||    
T  18325187 aaaatcaattctactcgagaaaatccaaacatgtcaaaatcaatt 18325231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 43 - 178
Target Start/End: Original strand, 33502856 - 33502995
Alignment:
Q  43 tgagttgaacaataaatttcactgtaaaaatcatttt---actcaaaagcttgaaatcctagcttcaagttagaatcaattttgtagg-aaaatcaattc 138  Q
    ||||||||||||||||||| | ||||| |||||  |    |||||||| |||||||| ||||||||||||||||||||||| || | | ||||||| ||     
T  33502856 tgagttgaacaataaattttagtgtaataatcacatctagactcaaaaacttgaaattctagcttcaagttagaatcaattctggatgcaaaatcagttt 33502955  T
Q  139 tacttgagagcaaccaaacatgtcaaaatcaattttacac 178  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  33502956 tactcgagagcaaccaaacatgtcaaaatcaattttacac 33502995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 7630405 - 7630361
Alignment:
Q  128 aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaatt 172  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  7630405 aaaatcaattctacttgaaagcaaccaaacatgtcaaaatcaatt 7630361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 40 - 172
Target Start/End: Complemental strand, 44439334 - 44439195
Alignment:
Q  40 aagtgagttgaacaataaatttcactgtaaaaatcatttt---actcaaaagcttgaaatcctagcttcaagttagaatcaatt-ttgta---ggaaaat 132  Q
    |||||||||||||||||||||| | ||| ||||||| |||   | |||||||||  ||||  |||||||||||||||||||||| || ||   | |||||    
T  44439334 aagtgagttgaacaataaatttgagtgttaaaatcaattttagaatcaaaagctccaaattttagcttcaagttagaatcaattcttctagaggcaaaat 44439235  T
Q  133 caattctacttgagagcaaccaaacatgtcaaaatcaatt 172  Q
    ||||| | || ||| |||||||||||||||||||| ||||    
T  44439234 caattttcctggagggcaaccaaacatgtcaaaattaatt 44439195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 43501130 - 43501073
Alignment:
Q  130 aatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacacgtccaggat 187  Q
    |||||||||||||||| ||||||||||||||||| |||||||| ||||  ||||||||    
T  43501130 aatcaattctacttgaaagcaaccaaacatgtcagaatcaattctacagctccaggat 43501073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 9943410 - 9943362
Alignment:
Q  130 aatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacac 178  Q
    |||||||||||  ||||||||||||||||||| ||||||||||||||||    
T  9943410 aatcaattctaagtgagagcaaccaaacatgttaaaatcaattttacac 9943362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 178
Target Start/End: Complemental strand, 37561782 - 37561646
Alignment:
Q  45 agttgaacaataaatttcactgtaaaaatcatttt---actcaaaagcttgaaatcctagcttcaagttagaatcaattttgtagg-aaaatcaattcta 140  Q
    |||||||||||| |||| | |||||||||||  ||   | ||||||| |  ||||| ||| |||||||||||||||||| |  ||| |||||||| ||||    
T  37561782 agttgaacaatagatttgagtgtaaaaatcacatttgaagtcaaaaggtacaaatcgtagtttcaagttagaatcaattatagaggcaaaatcaaatcta 37561683  T
Q  141 cttgagagcaaccaaacatgtcaaaatcaattttacac 178  Q
    |||||| | |  ||||||||||||||||||||||||||    
T  37561682 cttgag-gaattcaaacatgtcaaaatcaattttacac 37561646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 172
Target Start/End: Complemental strand, 32827537 - 32827457
Alignment:
Q  93 aaatcctagcttcaagttagaatcaatttt-gtaggaaaatcaattctacttgagagcaaccaaacatgtcaaaatcaatt 172  Q
    ||||||||||||||||||| || ||||||| | || ||||||||||  | |||| | || |||||||||||||||||||||    
T  32827537 aaatcctagcttcaagttataaccaattttagaagcaaaatcaatttcaattgacatcatccaaacatgtcaaaatcaatt 32827457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 36979362 - 36979326
Alignment:
Q  147 agcaaccaaacatgtcaaaatcaattttacacgtcca 183  Q
    ||||||||||||||||||||||||||||||| |||||    
T  36979362 agcaaccaaacatgtcaaaatcaattttacaggtcca 36979326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 178
Target Start/End: Original strand, 3476496 - 3476578
Alignment:
Q  99 tagcttcaagttagaatcaattttgtagg-aaaatcaattctacttgagagcaaccaaac--atgtcaaaatcaattttacac 178  Q
    |||||| ||||||||||||||| || ||| |||||||||| |||| ||||||||| ||||  || |||||||||||| |||||    
T  3476496 tagctttaagttagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacatatatcaaaatcaattctacac 3476578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 15928532 - 15928586
Alignment:
Q  130 aatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacacgtccag 184  Q
    |||||||||||||  | | |||||||||||||||||||||||| ||||| |||||    
T  15928532 aatcaattctactcaacaacaaccaaacatgtcaaaatcaattctacacctccag 15928586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 120
Target Start/End: Complemental strand, 9943486 - 9943403
Alignment:
Q  40 aagtgagttgaacaataaatttcactgtaaaaatcatttt---actcaaaagcttgaaatcctagcttcaagttagaatcaatt 120  Q
    |||| ||||||||||||||||||| || ||||| ||| ||   |||  ||||||  |||||||||||||||| |||||||||||    
T  9943486 aagtaagttgaacaataaatttcagtgaaaaaaccatgtttacacttgaaagctacaaatcctagcttcaagctagaatcaatt 9943403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 175
Target Start/End: Original strand, 15220933 - 15220978
Alignment:
Q  130 aatcaattctacttgagagcaaccaaacatgtcaaaatcaatttta 175  Q
    ||||||||||| |||||||||||||| ||| ||||||| |||||||    
T  15220933 aatcaattctatttgagagcaaccaagcatttcaaaattaatttta 15220978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 173
Target Start/End: Original strand, 1976942 - 1977006
Alignment:
Q  110 tagaatcaattttgtagg-aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaattt 173  Q
    |||||||||||||| ||  ||||||||||||||||   || || |||||||||||||||||||||    
T  1976942 tagaatcaattttggagacaaaatcaattctacttttaagaaagcaaacatgtcaaaatcaattt 1977006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 172
Target Start/End: Original strand, 2002756 - 2002835
Alignment:
Q  93 aaatcctagcttcaagttagaatcaattttgtagg-aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaatt 172  Q
    ||||||||||||||||| |||||||  | || ||| ||||||||||||||| || |||||||||  ||||||| |||||||    
T  2002756 aaatcctagcttcaagt-agaatcaggtctggaggcaaaatcaattctactagaaagcaaccaagtatgtcaacatcaatt 2002835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 7630168 - 7630093
Alignment:
Q  109 ttagaatcaattttgtagg-aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacacgtccag 184  Q
    |||||||||||| || ||| |||| ||||||||||  |||| || |||| ||||||||||||||||||||| |||||    
T  7630168 ttagaatcaattatggaggcaaaaccaattctactctagaggaatcaaa-atgtcaaaatcaattttacacctccag 7630093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 172
Target Start/End: Complemental strand, 11510978 - 11510898
Alignment:
Q  93 aaatcctagcttcaagttagaatcaattttgtagg-aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaatt 172  Q
    |||| ||||||||||| ||||||||| | || ||| ||||||||||||||| || | || |||||||| |||||| |||||    
T  11510978 aaattctagcttcaagatagaatcaaatatggaggcaaaatcaattctactcgaaaacatccaaacatatcaaaaccaatt 11510898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 44148562 - 44148518
Alignment:
Q  128 aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaatt 172  Q
    |||||||||| || |  ||||||||||||||||||||||||||||    
T  44148562 aaaatcaattatagtcaagagcaaccaaacatgtcaaaatcaatt 44148518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 118
Target Start/End: Complemental strand, 44810410 - 44810374
Alignment:
Q  82 tcaaaagcttgaaatcctagcttcaagttagaatcaa 118  Q
    |||||||||  ||||||||||||||||||||||||||    
T  44810410 tcaaaagctacaaatcctagcttcaagttagaatcaa 44810374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 40 - 178
Target Start/End: Original strand, 33560575 - 33560717
Alignment:
Q  40 aagtgagttgaacaataaatttcactgtaaaaatcatttt---actcaaaagcttgaaatcctagcttcaagttagaatcaattttgtagg-aaaatcaa 135  Q
    |||||||||||||||| ||| ||| | ||||||||| |||   |||||||||||  ||||||||||||   ||||||||||||| |  ||| ||||||||    
T  33560575 aagtgagttgaacaatgaatgtcagtttaaaaatcacttttagactcaaaagctacaaatcctagctttcggttagaatcaattctagaggcaaaatcaa 33560674  T
Q  136 ttctacttgagagcaaccaaacatgtcaaaatcaattttacac 178  Q
    ||||||| |||||||||||||||||||||||||||| ||||||    
T  33560675 ttctactcgagagcaaccaaacatgtcaaaatcaatgttacac 33560717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 34 - 172
Target Start/End: Complemental strand, 25319134 - 25318992
Alignment:
Q  34 acgtagaagtgagttgaacaataaatttcactgtaaaaat---catttt-actcaaaagcttgaaatcctagcttcaagttagaatcaattttgtagg-a 128  Q
    ||||| |||||||||||||||||||||||| | ||||||    |||||  ||||||| |||  |||||||| ||||||||||||||||||| || ||  |    
T  25319134 acgtaaaagtgagttgaacaataaatttcagtataaaaaatcacatttagactcaaa-gctacaaatcctaccttcaagttagaatcaattctggagaca 25319036  T
Q  129 aaatcaattctacttgagagcaaccaaacatgtcaaaatcaatt 172  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  25319035 aaatcaattctactcgagagcaaccaaacatgtcaaaatcaatt 25318992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 40 - 184
Target Start/End: Original strand, 11271543 - 11271691
Alignment:
Q  40 aagtgagttgaacaataaatttcactgtaaaaatcatttt---actcaaaagcttgaaatcctagcttcaagttagaatcaattttgtagg-aaaatc-a 134  Q
    ||||||||||||||||||| || | || |||| |||| ||   |||||||||||  |||||||||||||||||||||||||||| || ||| |||||| |    
T  11271543 aagtgagttgaacaataaactt-agtgcaaaagtcatgtttagactcaaaagctacaaatcctagcttcaagttagaatcaattctggaggcaaaatcaa 11271641  T
Q  135 attctacttgagagcaaccaaacatgtcaaaatcaattttacacgtccag 184  Q
    || | ||| || |||||||| || |||||||||||||||||||| |||||    
T  11271642 ataccactcgacagcaaccatacttgtcaaaatcaattttacacttccag 11271691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 82 - 172
Target Start/End: Original strand, 54705440 - 54705531
Alignment:
Q  82 tcaaaagcttgaaatcctagcttcaagttagaatcaattttgtagg-aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaatt 172  Q
    |||||||||  ||| |||||||||||||||| ||||||| |  ||| |||||||||| |||||| |||||||||||||||||  ||||||||    
T  54705440 tcaaaagctacaaaccctagcttcaagttagtatcaattattgaggcaaaatcaattatacttgtgagcaaccaaacatgtctgaatcaatt 54705531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 172
Target Start/End: Complemental strand, 22683940 - 22683808
Alignment:
Q  44 gagttgaacaataaatttcactgtaaaaatca---ttttactcaaaagcttgaaatcctagcttcaagttagaatcaattttgtagg-aaaatcaattct 139  Q
    |||||||||||||||||||| |||||||||||   ||  |||||||||||  | ||| ||||||||||||| ||| |||| || ||| |||||||||| |    
T  22683940 gagttgaacaataaatttcaatgtaaaaatcacgtttagactcaaaagctacagatcatagcttcaagttataattaattctggaggcaaaatcaatttt 22683841  T
Q  140 acttgagagcaaccaaacatgtcaaaatcaatt 172  Q
    |||  | | ||| | ||||||||||||||||||    
T  22683840 actcaaaaacaaaccaacatgtcaaaatcaatt 22683808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 166
Target Start/End: Complemental strand, 8330135 - 8330066
Alignment:
Q  98 ctagcttcaagttagaatcaattttgtaggaa-aatcaattctacttgagagcaaccaaacatgtcaaaa 166  Q
    ||||||||||||||||||| ||| || ||| | |||||||| ||||||||||||||||||||||| ||||    
T  8330135 ctagcttcaagttagaatccattatggaggcagaatcaattttacttgagagcaaccaaacatgtaaaaa 8330066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 29728989 - 29728945
Alignment:
Q  130 aatcaattctacttgagagcaaccaaacatgtcaaaatcaatttt 174  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||    
T  29728989 aatcaattctactcgagagcaaccaaacttgtcaaaatcaatttt 29728945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 128 - 178
Target Start/End: Complemental strand, 2635152 - 2635102
Alignment:
Q  128 aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacac 178  Q
    ||||||| |||||||| | ||||| ||||||||||||||||||||||||||    
T  2635152 aaaatcagttctacttaaaagcaatcaaacatgtcaaaatcaattttacac 2635102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 82 - 167
Target Start/End: Complemental strand, 18597075 - 18596989
Alignment:
Q  82 tcaaaagcttgaaatcctagcttcaagttagaatcaattttgtagg-aaaatcaattctacttgagagcaaccaaacatgtcaaaat 167  Q
    ||||||| || ||||  |||||||||||||||||||||| || ||| |||||||||| |||||||||| || ||||| |||| ||||    
T  18597075 tcaaaaggttcaaattatagcttcaagttagaatcaattctggaggtaaaatcaattttacttgagagaaatcaaacttgtctaaat 18596989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 82 - 183
Target Start/End: Original strand, 46344882 - 46344982
Alignment:
Q  82 tcaaaagcttgaaatcctagcttcaagttagaatcaattttgtagg-aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacacgt 180  Q
    ||||||||| ||||| ||| |||||||| ||||| |||| || ||| |||||||||| ||||||| ||||||||||||||||| ||| |||| ||||| |    
T  46344882 tcaaaagctggaaattctaacttcaagt-agaat-aattatggaggcaaaatcaattatacttgaaagcaaccaaacatgtcagaattaattatacacct 46344979  T
Q  181 cca 183  Q
    |||    
T  46344980 cca 46344982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 177
Target Start/End: Complemental strand, 30472923 - 30472874
Alignment:
Q  128 aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaattttaca 177  Q
    ||||| |||||||||| |||||||  ||||||||||||||||||||||||    
T  30472923 aaaattaattctacttaagagcaagtaaacatgtcaaaatcaattttaca 30472874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 183
Target Start/End: Complemental strand, 35065052 - 35064997
Alignment:
Q  128 aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacacgtcca 183  Q
    ||||||||||||||| || |||||||||| |||||| |||||||| ||||| ||||    
T  35065052 aaaatcaattctactcgaaagcaaccaaaaatgtcataatcaattctacacctcca 35064997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 178
Target Start/End: Original strand, 13947787 - 13947837
Alignment:
Q  128 aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacac 178  Q
    |||||||||| || |  |||| |||||||||||||||||||||||||||||    
T  13947787 aaaatcaattatattctagagaaaccaaacatgtcaaaatcaattttacac 13947837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 178
Target Start/End: Original strand, 26617723 - 26617773
Alignment:
Q  128 aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacac 178  Q
    ||||||||||||| |  | |||| |||||||||||||||||||||||||||    
T  26617723 aaaatcaattctattgaaaagcatccaaacatgtcaaaatcaattttacac 26617773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 178
Target Start/End: Original strand, 31013850 - 31013879
Alignment:
Q  149 caaccaaacatgtcaaaatcaattttacac 178  Q
    ||||||||||||||||||||||||||||||    
T  31013850 caaccaaacatgtcaaaatcaattttacac 31013879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 178
Target Start/End: Complemental strand, 45329854 - 45329785
Alignment:
Q  111 agaatcaattttgtagg-aaaatcaattctactt-gagagcaaccaaacatgtcaaaatcaattttacac 178  Q
    |||||||||| || ||| ||||| ||||||| || |||||||||||||||||| ||| ||||||||||||    
T  45329854 agaatcaattatggaggcaaaataaattctaattagagagcaaccaaacatgttaaagtcaattttacac 45329785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 1099825 - 1099781
Alignment:
Q  128 aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaatt 172  Q
    |||||||||||| || ||||||||||||| || ||||||||||||    
T  1099825 aaaatcaattctgctcgagagcaaccaaatatttcaaaatcaatt 1099781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 20712639 - 20712595
Alignment:
Q  128 aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaatt 172  Q
    ||||||||||||| |||||||||| ||| ||||| ||||||||||    
T  20712639 aaaatcaattctatttgagagcaaacaagcatgtaaaaatcaatt 20712595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 22250215 - 22250171
Alignment:
Q  128 aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaatt 172  Q
    ||||||||||||| |||||| ||||||||||||||| ||| ||||    
T  22250215 aaaatcaattctaattgagaacaaccaaacatgtcagaatgaatt 22250171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 175
Target Start/End: Original strand, 23335332 - 23335405
Alignment:
Q  106 aagttagaatcaattttgtagga----aaatcaattctacttgagagcaaccaaacatgtcaaaatcaatttta 175  Q
    |||||||||||||| ||| ||||    ||||||||| || |||| |||||||||||||||| ||| ||||||||    
T  23335332 aagttagaatcaatcttggaggaggcaaaatcaattttaattgatagcaaccaaacatgtcgaaaacaatttta 23335405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 42152979 - 42153027
Alignment:
Q  130 aatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacac 178  Q
    |||||||||||||  ||||||| ||||||||||||||| |||| |||||    
T  42152979 aatcaattctactcaagagcaatcaaacatgtcaaaataaattctacac 42153027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 49138933 - 49138981
Alignment:
Q  130 aatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacac 178  Q
    |||||||| ||||||| | ||||||||||||||| |||||||| |||||    
T  49138933 aatcaattttacttgaaaacaaccaaacatgtcagaatcaattctacac 49138981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 1e-24; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 82 - 178
Target Start/End: Original strand, 33141756 - 33141853
Alignment:
Q  82 tcaaaagcttgaaatcctagcttcaagttagaatcaattttgtagg-aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacac 178  Q
    |||||||||| |||| |||| ||| |||||||||||||| || ||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  33141756 tcaaaagcttcaaattctaggttctagttagaatcaattctggaggtaaaatcaattatacttgagagcaaccaaacatatcaaaatcaattttacac 33141853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 93 - 178
Target Start/End: Original strand, 5724691 - 5724776
Alignment:
Q  93 aaatcctagcttcaagttagaatcaattttgtagg-aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacac 178  Q
    ||||||||||||||||| ||||||||||||| ||| |||||||||||||| ||| |||| |||||||||||| |||||||| |||||    
T  5724691 aaatcctagcttcaagt-agaatcaattttggaggcaaaatcaattctacctgaaagcatccaaacatgtcagaatcaattctacac 5724776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 178
Target Start/End: Original strand, 29240518 - 29240598
Alignment:
Q  99 tagcttcaagttagaatcaattttgtagg-aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacac 178  Q
    |||||||||||||||||||| | || ||| |||||||||||||||||| |  | || ||||||||||||||||||||||||    
T  29240518 tagcttcaagttagaatcaactctggaggtaaaatcaattctacttgaaaatatcctaacatgtcaaaatcaattttacac 29240598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 178
Target Start/End: Original strand, 33136533 - 33136629
Alignment:
Q  82 tcaaaagcttgaaatcctagcttcaagttagaatcaattttgtaggaaaatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacac 178  Q
    |||||| ||| |||| |||||||  |||| |||||||| | |  | |||||||||| |||| ||||||||||||||||||||||||||||| |||||    
T  33136533 tcaaaaccttcaaattctagcttacagttcgaatcaatctggaggtaaaatcaattatactcgagagcaaccaaacatgtcaaaatcaattatacac 33136629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 6653796 - 6653748
Alignment:
Q  130 aatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacac 178  Q
    |||||||||||||||| |||||||||||| ||||||||||||| |||||    
T  6653796 aatcaattctacttgacagcaaccaaacaagtcaaaatcaattatacac 6653748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 33997215 - 33997147
Alignment:
Q  101 gcttcaagttagaatcaattttgtagg-aaaatcaattctacttgagagcaaccaaacatgtcaaaatc 168  Q
    |||||||||||||||||||| || ||| |||||||||  | |||||||| |||||||||||||||||||    
T  33997215 gcttcaagttagaatcaattgtgaaggcaaaatcaataatgcttgagagaaaccaaacatgtcaaaatc 33997147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 169
Target Start/End: Complemental strand, 18690659 - 18690620
Alignment:
Q  130 aatcaattctacttgagagcaaccaaacatgtcaaaatca 169  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  18690659 aatcaattctacttgaaagcaaccaaacatgtcaaaatca 18690620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 128 - 178
Target Start/End: Complemental strand, 26550508 - 26550458
Alignment:
Q  128 aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacac 178  Q
    ||||||||||||| |||||  |||||||||||||||||||||||| |||||    
T  26550508 aaaatcaattctagttgagtacaaccaaacatgtcaaaatcaattctacac 26550458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 98 - 155
Target Start/End: Original strand, 35098240 - 35098297
Alignment:
Q  98 ctagcttcaagttagaatcaattttgtagg-aaaatcaattctacttgagagcaaccaa 155  Q
    |||||||||| ||||||||||||||||||| ||||||||||||| |||| |||||||||    
T  35098240 ctagcttcaa-ttagaatcaattttgtaggcaaaatcaattctagttgaaagcaaccaa 35098297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 178
Target Start/End: Complemental strand, 4910943 - 4910847
Alignment:
Q  82 tcaaaagcttgaaatcctagcttcaagttagaatcaattttgtaggaa-aatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacac 178  Q
    |||||||||  ||||| ||||||||||| ||||||||||||  ||| | ||||||||||| ||||   ||||||||||||||| |||||||| |||||    
T  4910943 tcaaaagctacaaatcatagcttcaagt-agaatcaatttttgaggcagaatcaattctaattgacgacaaccaaacatgtcagaatcaattctacac 4910847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 172
Target Start/End: Original strand, 6654142 - 6654230
Alignment:
Q  84 aaaagcttgaaatcctagcttcaagttagaatcaattttgtaggaaaa-tcaattctacttgagagcaaccaaacatgtcaaaatcaatt 172  Q
    |||||||  ||||||||||||||||| ||||| |||| || ||||||| |||||||||||  | |||||||||||||| || ||||||||    
T  6654142 aaaagctacaaatcctagcttcaagt-agaattaattctgaaggaaaaatcaattctactcaatagcaaccaaacatgacataatcaatt 6654230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 7280477 - 7280429
Alignment:
Q  130 aatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacac 178  Q
    |||||||||||||||| ||||||||||||||| | ||| ||||||||||    
T  7280477 aatcaattctacttgaaagcaaccaaacatgtgagaattaattttacac 7280429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 25196026 - 25196070
Alignment:
Q  130 aatcaattctacttgagagcaaccaaacatgtcaaaatcaatttt 174  Q
    |||||||||||||||||||||||||||| | ||||||| ||||||    
T  25196026 aatcaattctacttgagagcaaccaaacctatcaaaataaatttt 25196070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 166
Target Start/End: Original strand, 2234274 - 2234348
Alignment:
Q  93 aaatcctagcttcaagttagaatcaattttgtagg-aaaatcaattctacttgagagcaaccaaacatgtcaaaa 166  Q
    ||||| || ||||| |||||||||||||  | ||| |||||||||||||||  ||||||||||||||| ||||||    
T  2234274 aaatcttaacttcatgttagaatcaattcaggaggcaaaatcaattctactcaagagcaaccaaacatatcaaaa 2234348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 25195462 - 25195516
Alignment:
Q  130 aatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacacgtccag 184  Q
    |||||||| |||| || ||||||||||||||||| |||||||| ||||| |||||    
T  25195462 aatcaattatactcgatagcaaccaaacatgtcagaatcaattatacacatccag 25195516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 178
Target Start/End: Original strand, 6544564 - 6544645
Alignment:
Q  98 ctagcttcaagttagaatcaattttgtagg-aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacac 178  Q
    ||||||||||||||||||||||| || ||| |||||||||| ||||||| | ||   || | ||||||||| ||||||||||    
T  6544564 ctagcttcaagttagaatcaattctgaaggcaaaatcaattttacttgaaaacattaaagcttgtcaaaataaattttacac 6544645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 178
Target Start/End: Original strand, 30926844 - 30926925
Alignment:
Q  98 ctagcttcaagttagaatcaattttgtaggaaaatc-aattctacttgagagcaaccaaacatgtcaaaatcaattttacac 178  Q
    ||||||||||||||||||| ||| |  ||  ||| | ||||||||| |||||| |||||||||||||||| ||||| |||||    
T  30926844 ctagcttcaagttagaatccattctaaagccaaaactaattctactcgagagcgaccaaacatgtcaaaagcaattatacac 30926925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 26550561 - 26550517
Alignment:
Q  128 aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaatt 172  Q
    ||||||||||||| |||||  |||||||||||||||| |||||||    
T  26550561 aaaatcaattctagttgagtacaaccaaacatgtcaagatcaatt 26550517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 26550614 - 26550570
Alignment:
Q  128 aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaatt 172  Q
    ||||||||||||| |||||  |||||||||||||||| |||||||    
T  26550614 aaaatcaattctagttgagtacaaccaaacatgtcaagatcaatt 26550570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 26550667 - 26550623
Alignment:
Q  128 aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaatt 172  Q
    ||||||||||||| |||||  |||||||||||||||| |||||||    
T  26550667 aaaatcaattctagttgagtacaaccaaacatgtcaagatcaatt 26550623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 178
Target Start/End: Original strand, 31305964 - 31305996
Alignment:
Q  146 gagcaaccaaacatgtcaaaatcaattttacac 178  Q
    ||||||||||||||||||||||||||| |||||    
T  31305964 gagcaaccaaacatgtcaaaatcaattctacac 31305996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 3e-19; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 99 - 174
Target Start/End: Complemental strand, 33548262 - 33548186
Alignment:
Q  99 tagcttcaagttagaatcaattttgtaggaaaa-tcaattctacttgagagcaaccaaacatgtcaaaatcaatttt 174  Q
    |||||||||||||||||| |||||| ||||||| |||||||||||| | |||| |||||||||||||||||||||||    
T  33548262 tagcttcaagttagaatccattttgaaggaaaaatcaattctacttaatagcatccaaacatgtcaaaatcaatttt 33548186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 178
Target Start/End: Original strand, 52925681 - 52925757
Alignment:
Q  103 ttcaagttagaatcaattttgtagg-aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacac 178  Q
    ||||||||||||||| || || ||| |||||  ||||||| |||||||||||||||||||||||||||||| |||||    
T  52925681 ttcaagttagaatcagttatggaggcaaaattgattctacgtgagagcaaccaaacatgtcaaaatcaattatacac 52925757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 93 - 183
Target Start/End: Original strand, 48089449 - 48089540
Alignment:
Q  93 aaatcctagcttcaagttagaatcaattttgtagg-aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacacgtcca 183  Q
    |||||||||||| | ||| ||||||||| |  ||| ||||| |||| |||| ||||||||||||||||| ||||||||||||||||| ||||    
T  48089449 aaatcctagcttaaggtttgaatcaattcttgaggcaaaattaattatactcgagagcaaccaaacatgccaaaatcaattttacacttcca 48089540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 178
Target Start/End: Complemental strand, 39256691 - 39256614
Alignment:
Q  102 cttcaagttagaatcaattttgtaggaaaa-tcaattctacttgagagcaaccaaacatgtcaaaatcaattttacac 178  Q
    |||||||| |||| |||||||| ||  ||| ||||||||||||||||| || |||||||||||||||||||| |||||    
T  39256691 cttcaagtcagaaacaattttggagtcaaagtcaattctacttgagagtaatcaaacatgtcaaaatcaattctacac 39256614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 2410024 - 2410072
Alignment:
Q  126 ggaaaatcaattctacttgagagcaaccaaacatgtcaaaatcaatttt 174  Q
    |||||||||||||||||||||| || |||||||||||||||| ||||||    
T  2410024 ggaaaatcaattctacttgagaacatccaaacatgtcaaaataaatttt 2410072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 3845210 - 3845258
Alignment:
Q  130 aatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacac 178  Q
    |||||||||||||||||| ||| |||||||||||||||||||| |||||    
T  3845210 aatcaattctacttgagatcaaacaaacatgtcaaaatcaattctacac 3845258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 195
Target Start/End: Original strand, 41115114 - 41115215
Alignment:
Q  93 aaatcctagcttcaagttagaatcaattttgtaggaaaa-tcaattctacttgagagcaaccaaacatgtcaaaatcaattttacacgtccaggattaac 191  Q
    |||||||||||||||||| |||| ||| | | ||| ||| |||||||||||||||   ||||||||||||||||||||||||| ||| || || || |||    
T  41115114 aaatcctagcttcaagtttgaattaatctaggaggcaaagtcaattctacttgagt--aaccaaacatgtcaaaatcaattttgcacttctagaatcaac 41115211  T
Q  192 tttt 195  Q
    ||||    
T  41115212 tttt 41115215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 54596805 - 54596757
Alignment:
Q  130 aatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacac 178  Q
    |||||||||||||||| | ||||||||||||||| ||||||||||||||    
T  54596805 aatcaattctacttgaaaacaaccaaacatgtcataatcaattttacac 54596757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 178
Target Start/End: Complemental strand, 38022444 - 38022376
Alignment:
Q  110 tagaatcaattttgtagg--aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacac 178  Q
    |||||||||||||| |||  |||||||||||||||||||  ||| |||||||| ||||||||||| |||||    
T  38022444 tagaatcaattttggaggcaaaaatcaattctacttgag--caatcaaacatgccaaaatcaattctacac 38022376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 175
Target Start/End: Original strand, 47356341 - 47356388
Alignment:
Q  128 aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaatttta 175  Q
    |||||||||| ||||||| ||||||||||||| ||| |||||||||||    
T  47356341 aaaatcaattatacttgatagcaaccaaacatatcataatcaatttta 47356388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 178
Target Start/End: Original strand, 44958702 - 44958752
Alignment:
Q  128 aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacac 178  Q
    |||||||||||  | ||||||||||||||||||||| |||||||| |||||    
T  44958702 aaaatcaattccccctgagagcaaccaaacatgtcagaatcaattctacac 44958752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 93 - 173
Target Start/End: Original strand, 43987612 - 43987693
Alignment:
Q  93 aaatcctagcttcaagttagaatcaattttgtagg-aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaattt 173  Q
    |||| |||||||| |||||||||  ||| |||||  |||||||||| ||||  ||| || ||||||||||||||||||||||    
T  43987612 aaattctagcttccagttagaattgattctgtagacaaaatcaattgtactcaagaacatccaaacatgtcaaaatcaattt 43987693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 48410891 - 48410952
Alignment:
Q  112 gaatcaattttgtagg-aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaatt 172  Q
    |||||||||||| ||| ||||||||||||||| || ||||| ||||||| ||| ||||||||    
T  48410891 gaatcaattttggaggcaaaatcaattctactcgaaagcaatcaaacatctcagaatcaatt 48410952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 120
Target Start/End: Original strand, 49634090 - 49634127
Alignment:
Q  83 caaaagcttgaaatcctagcttcaagttagaatcaatt 120  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  49634090 caaaagctacaaatcctagcttcaagttagaatcaatt 49634127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 21513425 - 21513469
Alignment:
Q  128 aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaatt 172  Q
    |||||||||||||||||||| || |||| ||||| ||||||||||    
T  21513425 aaaatcaattctacttgagaacatccaagcatgttaaaatcaatt 21513469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 12306723 - 12306664
Alignment:
Q  128 aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacacgtccaggat 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||    
T  12306723 aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaattctacacctctaggat 12306664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 172
Target Start/End: Complemental strand, 45005038 - 45004965
Alignment:
Q  99 tagcttcaagttagaatcaattttgtagg-aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaatt 172  Q
    ||||||||||| |||||||||| || ||| ||||||||||||| | |||||||||||||||||||||||||||||    
T  45005038 tagcttcaagt-agaatcaattctgaaggcaaaatcaattctattcgagagcaaccaaacatgtcaaaatcaatt 45004965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 128 - 183
Target Start/End: Complemental strand, 12306966 - 12306911
Alignment:
Q  128 aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacacgtcca 183  Q
    |||||||||||||||  |||||||||||||||||||||||||||||| ||| ||||    
T  12306966 aaaatcaattctactcaagagcaaccaaacatgtcaaaatcaattttgcacctcca 12306911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 48158878 - 48158832
Alignment:
Q  130 aatcaattctacttgagagcaaccaaacatgtcaaaatcaattttac 176  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||    
T  48158878 aatcaattttactcgagagcaaccaaacatgtcaaaatcaattttac 48158832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 152
Target Start/End: Complemental strand, 40422830 - 40422757
Alignment:
Q  80 actcaaaagcttgaaatcctagcttcaagttagaatcaattttgtagg-aaaatcaattctacttgagagcaac 152  Q
    ||||||||||   |||||||| ||||||||||||||||||| |  ||| |||||||||||||||||||||||||    
T  40422830 actcaaaagccacaaatcctaacttcaagttagaatcaattcttgaggcaaaatcaattctacttgagagcaac 40422757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 45369182 - 45369109
Alignment:
Q  98 ctagcttcaagttagaatcaatttt-gtaggaaaatcaattctacttgagagcaaccaaacatgtcaaaatcaa 170  Q
    |||||||||||||| |||||||| | | || |||||||||||||||||||| || |||||||| ||||||||||    
T  45369182 ctagcttcaagttaaaatcaattctagaagcaaaatcaattctacttgagaacatccaaacatctcaaaatcaa 45369109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 48253155 - 48253107
Alignment:
Q  128 aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaattttac 176  Q
    ||||||||||  |||||||||||| ||||||||||||||||||||||||    
T  48253155 aaaatcaattagacttgagagcaaacaaacatgtcaaaatcaattttac 48253107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 174
Target Start/End: Original strand, 41386867 - 41386957
Alignment:
Q  84 aaaagcttgaaatcctagcttcaagttagaatcaattttgtagga-aaatcaattctacttgagagcaaccaaacatgtcaaaatcaatttt 174  Q
    |||||||  ||||||||||||||||| |||||||||| || |||  ||||||||| |||| || ||||| ||||||||||| ||||||||||    
T  41386867 aaaagctacaaatcctagcttcaagt-agaatcaattctgaaggtgaaatcaattatactcgaaagcaatcaaacatgtcagaatcaatttt 41386957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 98 - 167
Target Start/End: Complemental strand, 42668118 - 42668048
Alignment:
Q  98 ctagcttcaagttagaatcaatttt-gtaggaaaatcaattctacttgagagcaaccaaacatgtcaaaat 167  Q
    ||||||||| |||||||||||||   | ||||||||||||||||||||||||| |||||| || |||||||    
T  42668118 ctagcttcatgttagaatcaattcaagaaggaaaatcaattctacttgagagcgaccaaatatttcaaaat 42668048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 128 - 178
Target Start/End: Complemental strand, 45004974 - 45004924
Alignment:
Q  128 aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacac 178  Q
    |||||||||| |||| ||||| ||||||||||||||||||||||| |||||    
T  45004974 aaaatcaattatactagagagtaaccaaacatgtcaaaatcaattctacac 45004924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 177
Target Start/End: Complemental strand, 6996520 - 6996475
Alignment:
Q  132 tcaattctacttgagagcaaccaaacatgtcaaaatcaattttaca 177  Q
    |||||| |||||||||| |||||||||||||| |||||||||||||    
T  6996520 tcaattatacttgagagtaaccaaacatgtcagaatcaattttaca 6996475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 175
Target Start/End: Complemental strand, 48917510 - 48917465
Alignment:
Q  130 aatcaattctacttgagagcaaccaaacatgtcaaaatcaatttta 175  Q
    ||||||||||||||||||||| ||||||| |||||||||| |||||    
T  48917510 aatcaattctacttgagagcagccaaacacgtcaaaatcagtttta 48917465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 15050281 - 15050237
Alignment:
Q  128 aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaatt 172  Q
    |||||||||||||| |||||| ||||||||| |||||||||||||    
T  15050281 aaaatcaattctacatgagagtaaccaaacaggtcaaaatcaatt 15050237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 183
Target Start/End: Complemental strand, 41841136 - 41841097
Alignment:
Q  144 gagagcaaccaaacatgtcaaaatcaattttacacgtcca 183  Q
    |||||||||||||||||||||| |||||||||||| ||||    
T  41841136 gagagcaaccaaacatgtcaaagtcaattttacacctcca 41841097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 172
Target Start/End: Complemental strand, 17111862 - 17111820
Alignment:
Q  130 aatcaattctacttgagagcaaccaaacatgtcaaaatcaatt 172  Q
    ||||||||||||| || ||||||||||||||||| ||||||||    
T  17111862 aatcaattctactcgaaagcaaccaaacatgtcagaatcaatt 17111820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 178
Target Start/End: Original strand, 21436060 - 21436146
Alignment:
Q  93 aaatcctagcttcaagttagaatcaattttgtagg-aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacac 178  Q
    |||| |||||||||||||| |||||||| |  ||| ||||| ||||||||| |||| ||   ||||||||||||||||||| |||||    
T  21436060 aaattctagcttcaagttaaaatcaattctcgaggtaaaataaattctactcgagaacattaaaacatgtcaaaatcaattatacac 21436146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 29829452 - 29829494
Alignment:
Q  128 aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaa 170  Q
    ||||||||||||||||||||||| |||| |||| |||||||||    
T  29829452 aaaatcaattctacttgagagcatccaagcatgacaaaatcaa 29829494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 178
Target Start/End: Complemental strand, 36270969 - 36270919
Alignment:
Q  128 aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacac 178  Q
    ||||||||||||||| ||||| ||||||||||  |||||||||||| ||||    
T  36270969 aaaatcaattctactagagagaaaccaaacatcacaaaatcaatttcacac 36270919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 110 - 174
Target Start/End: Original strand, 5489923 - 5489988
Alignment:
Q  110 tagaatcaattttgtagg-aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaatttt 174  Q
    |||||||||||||| ||| ||||| |||||||||   |||||||||||||||| | ||||||||||    
T  5489923 tagaatcaattttggaggcaaaattaattctactcaggagcaaccaaacatgtaagaatcaatttt 5489988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 22310762 - 22310811
Alignment:
Q  128 aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaattttaca 177  Q
    ||||||||||||| | ||||| |||||||||| |||||||||||| ||||    
T  22310762 aaaatcaattctattcgagagtaaccaaacatatcaaaatcaattataca 22310811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 173
Target Start/End: Complemental strand, 48290380 - 48290335
Alignment:
Q  128 aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaattt 173  Q
    |||||||||||| ||||| | || ||||||||||||||||||||||    
T  48290380 aaaatcaattctgcttgaaaacatccaaacatgtcaaaatcaattt 48290335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 176
Target Start/End: Original strand, 47306739 - 47306823
Alignment:
Q  93 aaatcctagcttcaagttagaatcaattttgtag-gaaaatcaattctacttgagagcaaccaaacatgtcaaaatcaattttac 176  Q
    |||||||||||  |||||||||| ||||||||||  || |||||||||||| || | |   ||||||||||| ||||||||||||    
T  47306739 aaatcctagctgtaagttagaattaattttgtagacaagatcaattctactggataactttcaaacatgtcacaatcaattttac 47306823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 40 - 178
Target Start/End: Original strand, 42439622 - 42439764
Alignment:
Q  40 aagtgagttgaacaataaatttcactgtaaaaatcatttt---actcaaaagcttgaaatcctagcttcaagttagaatcaattttgtagg-aaaatcaa 135  Q
    ||||||||||||| ||||| || | |||||||||||  ||   |||||||||||  | || ||||||||||||||||||||||| || ||| ||||||||    
T  42439622 aagtgagttgaacgataaaatttagtgtaaaaatcacgtttagactcaaaagctacagattctagcttcaagttagaatcaattctggaggaaaaatcaa 42439721  T
Q  136 ttctacttgagagcaaccaaacatgtcaaaatcaattttacac 178  Q
    ||||| |    ||||||||||  ||||||||||||||||||||    
T  42439722 ttctagtcacaagcaaccaaatgtgtcaaaatcaattttacac 42439764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 99 - 173
Target Start/End: Original strand, 11132852 - 11132927
Alignment:
Q  99 tagcttcaagttagaatcaattttgtagg-aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaattt 173  Q
    |||||||||||||||||||||||||  |  ||||| ||||||||| |||||||||||||||||||||| |||||||    
T  11132852 tagcttcaagttagaatcaattttgacgccaaaataaattctactagagagcaaccaaacatgtcaaagtcaattt 11132927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 82 - 178
Target Start/End: Complemental strand, 1105475 - 1105378
Alignment:
Q  82 tcaaaagcttgaaatcctagcttcaagttagaatcaattttgtagg-aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacac 178  Q
    |||||||||  ||||| || |||| ||||| ||||||||||| | | |||||||||||||||||||| || ||||| ||||||||||||||| |||||    
T  1105475 tcaaaagctacaaatcataacttcgagttaaaatcaattttgaaagcaaaatcaattctacttgagaacagccaaaaatgtcaaaatcaattatacac 1105378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 99 - 176
Target Start/End: Complemental strand, 40247432 - 40247355
Alignment:
Q  99 tagcttcaagttagaatcaattttgtaggaaaatcaattctacttgagagcaaccaaacatgtcaaaatcaattttac 176  Q
    ||||||||||||||||| ||||||| |||||||||| ||||| |  |||| |||||||  ||||||||||||||||||    
T  40247432 tagcttcaagttagaattaattttggaggaaaatcatttctattctagaggaaccaaatgtgtcaaaatcaattttac 40247355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 102 - 172
Target Start/End: Complemental strand, 10898738 - 10898667
Alignment:
Q  102 cttcaagttagaatcaattttgtagg-aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaatt 172  Q
    ||||||||||||||||||| |  ||| |||||||||| |||| |||||||||||||||||||||||| ||||    
T  10898738 cttcaagttagaatcaattctagaggcaaaatcaattttactcgagagcaaccaaacatgtcaaaattaatt 10898667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 33608523 - 33608450
Alignment:
Q  98 ctagcttcaagttagaatcaattttgtagg-aaaatcaattctactt-gagagcaaccaaacatgtcaaaatca 169  Q
    ||||||||||||||||||||||| |  ||| |||| ||||||||||| |||| |||||||||||||||||||||    
T  33608523 ctagcttcaagttagaatcaattctcaaggcaaaaccaattctactttgagaccaaccaaacatgtcaaaatca 33608450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 178
Target Start/End: Complemental strand, 29922913 - 29922833
Alignment:
Q  99 tagcttcaagttagaatcaattttgtagg-aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacac 178  Q
    ||||||||||||| |||||||| |  ||  |||||||||||| || |||| |||||||||||||||||||||||| |||||    
T  29922913 tagcttcaagttaaaatcaattcttgagacaaaatcaattctgctcgagaacaaccaaacatgtcaaaatcaattctacac 29922833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 38592217 - 38592173
Alignment:
Q  130 aatcaattctacttgagagcaaccaaacatgtcaaaatcaatttt 174  Q
    |||||||||||||||||||||||||||||| |||| |||||||||    
T  38592217 aatcaattctacttgagagcaaccaaacatatcaatatcaatttt 38592173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 7637479 - 7637534
Alignment:
Q  130 aatcaattctactt-gagagcaaccaaacatgtcaaaatcaattttacacgtccag 184  Q
    |||||||| ||||| |||||||| |||||||||||||||||||||||||| |||||    
T  7637479 aatcaattttactttgagagcaatcaaacatgtcaaaatcaattttacacatccag 7637534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 175
Target Start/End: Complemental strand, 36928058 - 36928015
Alignment:
Q  132 tcaattctacttgagagcaaccaaacatgtcaaaatcaatttta 175  Q
    |||||||||||| |||||||||||| ||||||||||||||||||    
T  36928058 tcaattctacttcagagcaaccaaatatgtcaaaatcaatttta 36928015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 128 - 174
Target Start/End: Complemental strand, 38045438 - 38045392
Alignment:
Q  128 aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaatttt 174  Q
    |||||||||||||||||||| ||  ||||||||||||||||||||||    
T  38045438 aaaatcaattctacttgagaacattcaaacatgtcaaaatcaatttt 38045392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 178
Target Start/End: Complemental strand, 10957480 - 10957400
Alignment:
Q  98 ctagcttcaagttagaatcaattttgtaggaaaatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacac 178  Q
    ||||||||| ||||||||||||| |  | | |||||||||||  || ||||| | |||||||||||||||||||| |||||    
T  10957480 ctagcttcaggttagaatcaattctagaagcaaatcaattctgattaagagcgatcaaacatgtcaaaatcaattctacac 10957400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 39097251 - 39097203
Alignment:
Q  130 aatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacac 178  Q
    |||||||||||| ||| | |||||||||||||||||||||||| |||||    
T  39097251 aatcaattctacctgaaaccaaccaaacatgtcaaaatcaattctacac 39097203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 167
Target Start/End: Complemental strand, 29922643 - 29922576
Alignment:
Q  101 gcttcaagttagaatcaattttgtagg-aaaatcaattctacttgagagcaaccaaacatgtcaaaat 167  Q
    ||||||||||| |||||||| |  ||| ||||||||||||||| |||| ||| |||||||||||||||    
T  29922643 gcttcaagttaaaatcaattcttgaggcaaaatcaattctactagagaacaatcaaacatgtcaaaat 29922576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 75
Target Start/End: Original strand, 37886043 - 37886078
Alignment:
Q  40 aagtgagttgaacaataaatttcactgtaaaaatca 75  Q
    |||||||||||||||||||||||| |||||||||||    
T  37886043 aagtgagttgaacaataaatttcaatgtaaaaatca 37886078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 178
Target Start/End: Complemental strand, 11648106 - 11648021
Alignment:
Q  93 aaatcctagcttcaagttagaatcaattttgtaggaa-aatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacac 178  Q
    ||||| ||||||||||| ||||||||||||  | | | ||| ||||||||| || ||||| |||||||||||||||||||| |||||    
T  11648106 aaatcttagcttcaagt-agaatcaattttaaatgcataataaattctactcgacagcaatcaaacatgtcaaaatcaattatacac 11648021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 76
Target Start/End: Original strand, 37882727 - 37882769
Alignment:
Q  34 acgtagaagtgagttgaacaataaatttcactgtaaaaatcat 76  Q
    ||||| ||||||||||||||||| |||||| ||||||||||||    
T  37882727 acgtaaaagtgagttgaacaatacatttcaatgtaaaaatcat 37882769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 84 - 183
Target Start/End: Original strand, 9449266 - 9449367
Alignment:
Q  84 aaaagcttgaaatcctagcttcaagttagaatcaattttgtagg-aaaatcaattctacttgagagc-aaccaaacatgtcaaaatcaattttacacgtc 181  Q
    |||||||  ||||| |||||| ||||| |||||||||||| |||  |||| |||||||||||||||| || | |||||| || | |||||||||||| ||    
T  9449266 aaaagctacaaatcttagctttaagttggaatcaattttggaggcgaaattaattctacttgagagcaaaactaacatgccagagtcaattttacacctc 9449365  T
Q  182 ca 183  Q
    ||    
T  9449366 ca 9449367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 177
Target Start/End: Complemental strand, 43012726 - 43012677
Alignment:
Q  128 aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaattttaca 177  Q
    |||||||||||||||  | | ||| |||||||||||||||||||||||||    
T  43012726 aaaatcaattctactctaaatcaaacaaacatgtcaaaatcaattttaca 43012677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 2973352 - 2973396
Alignment:
Q  128 aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaatt 172  Q
    ||||| |||| | |||||||||||||||| |||||||||||||||    
T  2973352 aaaattaattatgcttgagagcaaccaaatatgtcaaaatcaatt 2973396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 4848237 - 4848293
Alignment:
Q  128 aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacacgtccag 184  Q
    ||||||||||||||| ||||| |  ||||||||||| ||||||||| |||| |||||    
T  4848237 aaaatcaattctactcgagagtagtcaaacatgtcagaatcaatttcacacctccag 4848293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 76
Target Start/End: Complemental strand, 7925466 - 7925430
Alignment:
Q  40 aagtgagttgaacaataaatttcactgtaaaaatcat 76  Q
    |||||||||||||||||||||| | ||||||||||||    
T  7925466 aagtgagttgaacaataaatttgagtgtaaaaatcat 7925430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 172
Target Start/End: Original strand, 27374352 - 27374431
Alignment:
Q  93 aaatcctagcttcaagttagaatcaattttgtagg-aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaatt 172  Q
    |||||||| |||||||| |||||||||| |  ||| ||||| |||||||||||| | ||||||||||||||| || |||||    
T  27374352 aaatcctaacttcaagt-agaatcaattcttaaggcaaaattaattctacttgaaaacaaccaaacatgtcagaaacaatt 27374431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 34250449 - 34250497
Alignment:
Q  130 aatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacac 178  Q
    |||||||||||||  |||| ||||||||||||||||| ||||| |||||    
T  34250449 aatcaattctactctagagaaaccaaacatgtcaaaaacaattctacac 34250497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 99 - 167
Target Start/End: Original strand, 12373 - 12442
Alignment:
Q  99 tagcttcaagttagaatcaattttgtagg-aaaatcaattctacttgagagcaaccaaacatgtcaaaat 167  Q
    ||||||||||||||||||| || || ||| |||||||||||||||||||| || ||||||||||||||||    
T  12373 tagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 12442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 172
Target Start/End: Complemental strand, 32927972 - 32927837
Alignment:
Q  40 aagtgagttgaacaataaatttcactgtaaaaatcattt---tactcaaaagcttgaaatcctagcttcaagttagaatcaattttgtagg-aaaatcaa 135  Q
    ||||||||||||| ||||||||   ||||||||| | ||   || |||||||||  ||||||||||||||||| |||||||| | |  ||| ||||||||    
T  32927972 aagtgagttgaactataaatttgtgtgtaaaaatgaattctataatcaaaagctacaaatcctagcttcaagt-agaatcaactattgaggcaaaatcaa 32927874  T
Q  136 ttctacttgagagcaaccaaacatgtcaaaatcaatt 172  Q
    ||||||| || ||||||||||||||||| | ||||||    
T  32927873 ttctactggaaagcaaccaaacatgtcagagtcaatt 32927837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 37061404 - 37061481
Alignment:
Q  102 cttcaagttagaatcaattttgtagg-aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacac 178  Q
    ||||||||| |||| ||||||||||| |||||||| | ||||||| |||| ||||||||||||| ||||||| |||||    
T  37061404 cttcaagttggaataaattttgtaggcaaaatcaactatacttgaaagcatccaaacatgtcaatatcaattatacac 37061481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 169
Target Start/End: Original strand, 29979513 - 29979554
Alignment:
Q  128 aaaatcaattctacttgagagcaaccaaacatgtcaaaatca 169  Q
    |||| ||||||||||||||| |||||||||||||||||||||    
T  29979513 aaaaccaattctacttgagaccaaccaaacatgtcaaaatca 29979554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 165
Target Start/End: Complemental strand, 32056384 - 32056316
Alignment:
Q  98 ctagcttcaagttagaatcaattttgtagg-aaaatcaattctacttgagagcaaccaaacatgtcaaa 165  Q
    ||||||| ||||||||||||||| || ||| |||||||||| ||||  ||||||||||||| |||||||    
T  32056384 ctagcttaaagttagaatcaattatggaggtaaaatcaattttactatagagcaaccaaacttgtcaaa 32056316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 4336389 - 4336346
Alignment:
Q  129 aaatcaattctacttgagagcaaccaaacatgtcaaaatcaatt 172  Q
    ||||||||| |||| |||| ||||||||||||||||||||||||    
T  4336389 aaatcaattatactcgagaccaaccaaacatgtcaaaatcaatt 4336346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 183
Target Start/End: Original strand, 5859145 - 5859216
Alignment:
Q  113 aatcaattttgtaggaa-aatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacacgtcca 183  Q
    ||||||||||| ||| | |||||||| ||||||| |||||| |||||| ||| |||||||||||||| ||||    
T  5859145 aatcaattttggaggtataatcaattttacttgaaagcaactaaacatatcagaatcaattttacacctcca 5859216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 163
Target Start/End: Complemental strand, 7533786 - 7533751
Alignment:
Q  128 aaaatcaattctacttgagagcaaccaaacatgtca 163  Q
    |||||||||||||||||| |||||||||||||||||    
T  7533786 aaaatcaattctacttgaaagcaaccaaacatgtca 7533751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 177
Target Start/End: Original strand, 15677896 - 15677943
Alignment:
Q  130 aatcaattctacttgagagcaaccaaacatgtcaaaatcaattttaca 177  Q
    ||||||||||| |||| ||||||||||||||||| |||||||| ||||    
T  15677896 aatcaattctatttgaaagcaaccaaacatgtcagaatcaattgtaca 15677943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 175
Target Start/End: Complemental strand, 41614833 - 41614786
Alignment:
Q  128 aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaatttta 175  Q
    |||||||||||||||||| | || ||||||| ||||||||||||||||    
T  41614833 aaaatcaattctacttgaaaccatccaaacaagtcaaaatcaatttta 41614786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 122
Target Start/End: Original strand, 1836213 - 1836302
Alignment:
Q  36 gtagaagtgagttgaacaataaatttcactgtaaaaatca-ttttact--caaaagcttgaaatcctagcttcaagttagaatcaatttt 122  Q
    |||||||| | |||||||||||| || | |||||| |||| |||| ||  ||||||||  | ||||||||||||||||||||||||||||    
T  1836213 gtagaagtaaattgaacaataaacttgagtgtaaatatcacttttgctttcaaaagctacacatcctagcttcaagttagaatcaatttt 1836302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 178
Target Start/End: Complemental strand, 4554323 - 4554273
Alignment:
Q  128 aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacac 178  Q
    |||||||||| |||| ||||||||| |||  ||||||||||||||||||||    
T  4554323 aaaatcaattatactagagagcaactaaatgtgtcaaaatcaattttacac 4554273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 172
Target Start/End: Complemental strand, 11038201 - 11038127
Alignment:
Q  99 tagcttcaagttagaatcaattttgtaggaaaa-tcaattctacttgagagcaaccaaacatgtcaaaatcaatt 172  Q
    |||||||||||||||||||| | || ||||||| |||| || | | |||| || |||||||||||||||||||||    
T  11038201 tagcttcaagttagaatcaactctggaggaaaaatcaactccattcgagaacatccaaacatgtcaaaatcaatt 11038127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 167
Target Start/End: Original strand, 39648389 - 39648475
Alignment:
Q  82 tcaaaagcttgaaatcctagcttcaagttagaatcaattttgtag-gaaaatcaattctacttgagagcaaccaaacatgtcaaaat 167  Q
    |||||||||  |||||||||||| |||||||||||| || |  || |||||||||||||  ||||| ||| |||||| |||||||||    
T  39648389 tcaaaagctacaaatcctagcttaaagttagaatcagttctagagagaaaatcaattctgattgagggcatccaaacttgtcaaaat 39648475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 178
Target Start/End: Complemental strand, 35495278 - 35495199
Alignment:
Q  99 tagcttcaagttagaatcaattttgtagg-aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacac 178  Q
    ||||||||||| |||||||||| |  ||| ||||| ||||||| || |||| ||| ||||||||||||||||||| |||||    
T  35495278 tagcttcaagt-agaatcaattctagaggcaaaattaattctaatttagagaaacaaaacatgtcaaaatcaattctacac 35495199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 39648242 - 39648290
Alignment:
Q  129 aaatcaattctacttgagagcaaccaaacatgtcaaaatcaattttaca 177  Q
    ||||||||| ||||  |||| ||||||||||||||||||||||| ||||    
T  39648242 aaatcaattttactatagagaaaccaaacatgtcaaaatcaattataca 39648290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 178
Target Start/End: Complemental strand, 31861 - 31765
Alignment:
Q  82 tcaaaagcttgaaatcctagcttcaagttagaatcaattttgtaggaa-aatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacac 178  Q
    |||||||||  ||||||||||||||||| | ||||||||||| ||| | |||||||| |||| || | ||||||||||||||| |||||||| |||||    
T  31861 tcaaaagctacaaatcctagcttcaagt-ataatcaattttggaggcagaatcaattttactcgacaacaaccaaacatgtcagaatcaattctacac 31765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 183
Target Start/End: Original strand, 23643 - 23744
Alignment:
Q  82 tcaaaagcttgaaatcctagcttcaagttagaatcaattttgtagg-aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacacgt 180  Q
    |||||||||  |||||||||||||| |||||||| | || || ||  ||||||||||| | | ||| |||||||||||||||||||| || ||||||| |    
T  23643 tcaaaagctacaaatcctagcttca-gttagaattatttatggagacaaaatcaattccattcgagggcaaccaaacatgtcaaaataaactttacacct 23741  T
Q  181 cca 183  Q
    |||    
T  23742 cca 23744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 17141 - 17076
Alignment:
Q  110 tagaatcaattttgtaggaaaa-tcaattctacttgagagcaaccaaacatgtcaaaatcaatttt 174  Q
    ||||||||||| || ||||||| ||||||| |||| |||| |||||||||||| |||||| |||||    
T  17141 tagaatcaattatggaggaaaaatcaattcaactttagaggaaccaaacatgtgaaaatcgatttt 17076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 13289 - 13337
Alignment:
Q  130 aatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacac 178  Q
    |||||||||||||| | ||||||||||||||| |  |||||||||||||    
T  13289 aatcaattctacttcaaagcaaccaaacatgttagcatcaattttacac 13337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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