View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9463_low_4 (Length: 434)
Name: NF9463_low_4
Description: NF9463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9463_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 6 - 421
Target Start/End: Complemental strand, 19049898 - 19049462
Alignment:
| Q |
6 |
tttggtgttaatcctccaattttcacaggcaatcactagtaatttgtagttcagtcgaaagacaagtaaagtgtgattaaagattgtaccacctaaaaat |
105 |
Q |
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| T |
19049898 |
tttggtgttaatcctccaattttcacaggcaatcactagtaatttgtagttcaatcgaaaggtaagtaaaatgtgactaaagattgtaccacctaagaat |
19049799 |
T |
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| Q |
106 |
tgatcttagcattcttccgaacaattcatatttaaatggaactcatcaa---------------------tcggttttgatttagcatttgctgtttatg |
184 |
Q |
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| T |
19049798 |
tgatcttagcattcttccgaacaattcatgtttaaatggaactcatcaaccacttaagttaattattcaatcggttttgatttagcatttgctgtttatg |
19049699 |
T |
|
| Q |
185 |
ctatcttactagtgttttgattggaacaatttgctggtttggtgcaatcatttggaggaacaattattgttttggcttaatcatcataattcatgagtaa |
284 |
Q |
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| T |
19049698 |
ctatcttactagtgttttgattggaacaatttgctggtttggtgcaatcatttggaggaacaattattgttttggcttaatcatcataattcatgagtaa |
19049599 |
T |
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| Q |
285 |
atggataatgggattagattttgtgtcctacaacctttgaataatggttccaattttccttacctatttgtcttgcactattagatagatttactctact |
384 |
Q |
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| T |
19049598 |
aaggataatgggattagattttgtgtcctacaacctttgaataatggttccaattttccttacctatttgtcttgcactattagatagatttactctact |
19049499 |
T |
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| Q |
385 |
ttttgttgattctgtttctggcagggaatatgctatt |
421 |
Q |
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| T |
19049498 |
ttttgtttattctgtttctggcagggaatatgctatt |
19049462 |
T |
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