View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9463_low_8 (Length: 414)
Name: NF9463_low_8
Description: NF9463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9463_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 10 - 408
Target Start/End: Original strand, 31589737 - 31590119
Alignment:
| Q |
10 |
gttggttcggtcgttgtcagtcctaattgtgaggcattcgattgattagatctaatggttaagagttggtgtaagttataggagttgtacattgtgtcaa |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
31589737 |
gttggttcggtcgttgtcagtcctaattgtgaggcattcgattgattagatctaatggttaagagttggtgtaagttataagagttgtacatagtgtcaa |
31589836 |
T |
|
| Q |
110 |
cggatcgcgactaacaaccattatagaaatacatcaatttattatttaagagaaatacattatttgnnnnnnnnnggaagaaatgaaatatattttttgt |
209 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31589837 |
cggatcccgactcacaaccattatagaaatacatcaatttattctttaagagaaatacattatttgttttttt--ggaagaaatgaaatatattttttgt |
31589934 |
T |
|
| Q |
210 |
tgacatcctaaagaatttttaagagaaatactatattttttgttgacaacctagataaaaatcgcacacactcataaaatagtactccttaaccgtaaac |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
31589935 |
tgacatcctaaagaatttttaagagaaatactatattttttgttgacaacctagataaaaatcgcacacactcataaaatagcactccttaaccgtaaac |
31590034 |
T |
|
| Q |
310 |
tttggcttaactacttttcaccgattttcaattaacaattaacaatagcatatggcatcgttatggcgcgcagggaccaagctatctgtactagcaacc |
408 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
31590035 |
tttggcttaactacttttcaccgatttt--------------caatagcatatggcatcgttatggcgcgcagggaccaagctatctctactagcaacc |
31590119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 48716636 - 48716583
Alignment:
| Q |
34 |
aattgtgaggcattcgattgattagatctaatggttaagagttggtgtaagtta |
87 |
Q |
| |
|
|||| |||| ||||||||||||||||| |||||||| ||| ||| ||||||||| |
|
|
| T |
48716636 |
aattatgagccattcgattgattagatttaatggttgagatttgatgtaagtta |
48716583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University