View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9464_low_1 (Length: 713)
Name: NF9464_low_1
Description: NF9464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9464_low_1 |
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| [»] scaffold1330 (1 HSPs) |
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| [»] scaffold0345 (1 HSPs) |
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| [»] scaffold0105 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 614; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 614; E-Value: 0
Query Start/End: Original strand, 15 - 693
Target Start/End: Complemental strand, 44919601 - 44918924
Alignment:
| Q |
15 |
ggacatcacaagaaaagtaaacccaatgttccactatgcccatttttcgcctaagttgatataattctccagtagtaataagtgatcgaaaacttcggtt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44919601 |
ggacatcacaagaaaagtaaacccaatgttccactatgcccatttttcgcctaagttgatataattctccagtagtaataagtgatcgaaaacttcggtt |
44919502 |
T |
|
| Q |
115 |
taatgcagcgattgagccataatcagaccttgacacccgaaggagacaatggattgatgcatcacggtcgagctgagaaataagcaaactcgagtcatct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44919501 |
taatgcagcgattgagccataatcagaccttgacacccgaaggagacaatggattgatgcatcacggtcgagctgagaaataagcaaactcgagtcatct |
44919402 |
T |
|
| Q |
215 |
gcatgattttcaagattcttctgtttttccctttctttgggatcgtctagaatttcacttgactttctcgacatatccttctactcttctgctccattga |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44919401 |
gcatgattttcaagattcttctgtttttccctttctttgggatcgtctagaatttcacttgactttctcgacatatccttctactcttctgctccattga |
44919302 |
T |
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| Q |
315 |
gatcatattgttttggaaaaccacaatcaacaaagatagttaa-aaaatcccgttaattaaatatatttaacaaatatagggatgaaaattctcacgcgc |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44919301 |
gatcatattgttttggaaaaccacaatcaacaaagatagttaaaaaaatcccgttaattaaatatatttaacaaatatagggatgaaaattctcacgcgc |
44919202 |
T |
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| Q |
414 |
gcgc--gcacacacattcttacgagatataacattcacacatagatcatagaaattgataagaatccaacaaacaatattagctcattatgaacaataac |
511 |
Q |
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|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44919201 |
gcgcgtgcgcacacattcttacgagatataacattcacacatagatcatagaaattgataagaatccaacaaacaatattagctcattatgaacaataac |
44919102 |
T |
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| Q |
512 |
caagatcaaaacaataataagaaacaaaatatacactgtccaaaaactttatatttttcgtgtttttgctgttttaaccaagattctgagatcgagtcca |
611 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| || |
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| T |
44919101 |
caagatcaaaacaataataagaaacaaaatatacactttccaaaaactttatatttttcgtgtttttgatgttttaaccaagattttgagatcgagttca |
44919002 |
T |
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| Q |
612 |
gcattggacatacatacagtaacgttaatactatcagggagagtttactgtcaattacacgcaaatgatacgtggtttacgt |
693 |
Q |
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||||||| |||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
44919001 |
gcattgg----acatacagtaacattaatactatcagggagagtttaccgtcaattgcacgcaaatgatacgtggtttacgt |
44918924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 19 - 172
Target Start/End: Complemental strand, 7457541 - 7457388
Alignment:
| Q |
19 |
atcacaagaaaagtaaacccaatgttccactatgcccatttttcgcctaagttgatataattctccagtagtaataagtgatcgaaaacttcggtttaat |
118 |
Q |
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||||||||| ||||||||||||||||| ||||||||| |||||| | || |||| || || || | |||| |||||||||||| | ||| ||| |
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| T |
7457541 |
atcacaagagaagtaaacccaatgttcttctatgcccaattttcgtcgtagctgatgtagctcccctgatctaattagtgatcgaaaattcttgttcaat |
7457442 |
T |
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| Q |
119 |
gcagcgattgagccataatcagaccttgacacccgaaggagacaatggattgat |
172 |
Q |
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|||| ||| ||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
7457441 |
gcagaaattaagccataatcagaccttgacaattgaagaagacaatggattgat |
7457388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1330 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1330
Description:
Target: scaffold1330; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 1099 - 1039
Alignment:
| Q |
112 |
gtttaatgcagcgattgagccataatcagaccttgacacccgaaggagacaatggattgat |
172 |
Q |
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||||| |||||| ||||| ||||||||||| ||||||| |||||| ||||||||||||||| |
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| T |
1099 |
gtttattgcagcaattgaaccataatcagatcttgacaaccgaagaagacaatggattgat |
1039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 4279 - 4339
Alignment:
| Q |
112 |
gtttaatgcagcgattgagccataatcagaccttgacacccgaaggagacaatggattgat |
172 |
Q |
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||||| |||||| ||||| ||||||||||| ||||||| |||||| ||||||||||||||| |
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| T |
4279 |
gtttattgcagcaattgaaccataatcagatcttgacaaccgaagaagacaatggattgat |
4339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 37; Significance: 0.00000000002; HSPs: 5)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 4392 - 4452
Alignment:
| Q |
112 |
gtttaatgcagcgattgagccataatcagaccttgacacccgaaggagacaatggattgat |
172 |
Q |
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||||| |||||| ||||| ||||||||||| ||||||| |||||| ||||||||||||||| |
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| T |
4392 |
gtttattgcagcaattgaaccataatcagatcttgacaaccgaagaagacaatggattgat |
4452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 10474 - 10534
Alignment:
| Q |
112 |
gtttaatgcagcgattgagccataatcagaccttgacacccgaaggagacaatggattgat |
172 |
Q |
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||||| |||||| ||||| ||||||||||| ||||||| |||||| ||||||||||||||| |
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| T |
10474 |
gtttattgcagcaattgaaccataatcagatcttgacaaccgaagaagacaatggattgat |
10534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 11747 - 11807
Alignment:
| Q |
112 |
gtttaatgcagcgattgagccataatcagaccttgacacccgaaggagacaatggattgat |
172 |
Q |
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||||| |||||| ||||| ||||||||||| ||||||| |||||| ||||||||||||||| |
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| T |
11747 |
gtttattgcagcaattgaaccataatcagatcttgacaaccgaagaagacaatggattgat |
11807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 34700 - 34640
Alignment:
| Q |
112 |
gtttaatgcagcgattgagccataatcagaccttgacacccgaaggagacaatggattgat |
172 |
Q |
| |
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||||| |||||| ||||| ||||||||||| ||||||| |||||| ||||||||||||||| |
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| T |
34700 |
gtttattgcagcaattgaaccataatcagatcttgacaaccgaagaagacaatggattgat |
34640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 48300 - 48240
Alignment:
| Q |
112 |
gtttaatgcagcgattgagccataatcagaccttgacacccgaaggagacaatggattgat |
172 |
Q |
| |
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||||| |||||| ||||| ||||||||||| ||||||| |||||| ||||||||||||||| |
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| T |
48300 |
gtttattgcagcaattgaaccataatcagatcttgacaaccgaagaagacaatggattgat |
48240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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