View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9464_low_3 (Length: 452)
Name: NF9464_low_3
Description: NF9464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9464_low_3 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 186 - 452
Target Start/End: Complemental strand, 32642227 - 32641964
Alignment:
| Q |
186 |
aaaaacacaaacacttataagatacataacacaacacaataccaaaaatttcggttaaacttcctctatatttggggtcacacatactcattgggattaa |
285 |
Q |
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| T |
32642227 |
aaaaacacaaacacttataagatacataacacaacacaataccaaaaatttcggttaaacttcctctatatttggggtcacacatactcattgggattaa |
32642128 |
T |
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| Q |
286 |
tggcacagttacctcctaaaataccaagtaccatacctcaaaattggccatattttcctcaacaaagggtatcatcatcatcatccacaatgtcaaacat |
385 |
Q |
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| T |
32642127 |
tggcacagttacctcctaaaataccaagtaccataccccaaaattggccatattttcctcaccaaagggtatcatcat---catccacaatgtcaaacat |
32642031 |
T |
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| Q |
386 |
cacctccaccaccacgaccccggccccgacccagaataatactcctgaccctcaaccatccccacca |
452 |
Q |
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| T |
32642030 |
cacctccaccaccacgaccacggccacgacccagaataatacttctgaccatcaacaatcaccacca |
32641964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 73 - 151
Target Start/End: Complemental strand, 32642340 - 32642262
Alignment:
| Q |
73 |
ccactacttttagaagcccgagaacaagattttgaagtaaagatttgcggttgtttgtgtgttggttaggttgttgaga |
151 |
Q |
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| T |
32642340 |
ccactacttttagaagcccgagaacaagattttgaagtaaagatttgcggttgtttgtgtgttggttaggttgttgaga |
32642262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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