View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9464_low_4 (Length: 345)
Name: NF9464_low_4
Description: NF9464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9464_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 32 - 172
Target Start/End: Original strand, 16689695 - 16689835
Alignment:
| Q |
32 |
ttctgtaataaatgtacaaaatgtacctgatccttgttaaatagtgcaggccaatccttcatttccacaagccttttagcaacatcgcgactcaaagaaa |
131 |
Q |
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| T |
16689695 |
ttctgtaataaatgtacaaaatgtacctgatccttgttaaatagtgcaggccaatccttcatttccacaagccttttagcaacatcgcgactcaaagaaa |
16689794 |
T |
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| Q |
132 |
ttctgtaattcaagtccccgaaccatataattcggctggag |
172 |
Q |
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| T |
16689795 |
ttctgtaattcaagtccccgaaccatataattcggctggag |
16689835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 255 - 331
Target Start/End: Original strand, 16689928 - 16690004
Alignment:
| Q |
255 |
gtctctgcattataactttaaaactagttttgaatgatacttactcgtgatctaaaattttgtcaggcatcctactg |
331 |
Q |
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| T |
16689928 |
gtctctgcattataactttaaaactagttttgaatgatacttactcgtgatctaaaattttgtcaggcatcctactg |
16690004 |
T |
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