View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9465_low_3 (Length: 292)
Name: NF9465_low_3
Description: NF9465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9465_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 41539167 - 41539443
Alignment:
| Q |
1 |
accacacagaataacaaaaggattaaagaagattgaaaaggttcaaatgcgacaattaaaaatacaaaaacaaagcgaaaaggactacggacttggacac |
100 |
Q |
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| T |
41539167 |
accacacagaataacaaaaggattaaagaagattgaaaaggttcaaatgcgacaattaaaaatacaaaaacaaagcgaaaaggactacggacttggacac |
41539266 |
T |
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| Q |
101 |
cgacaacataactgaaactgcatattcctcgaagaaacttcagtcaattttttcaaccttcacacgaaccagttttggttcctttgttgtggatgcatca |
200 |
Q |
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| T |
41539267 |
cgacaacataactgaaactgcatattccttgaagaaacttcagtcaattttttcaaccttcacacgaaccagttttggttcctttgttgtggatgcatca |
41539366 |
T |
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| Q |
201 |
cctcctatcacctcaagatcatccagtgactcaacacgatcagcacttctctttcccaaagctttgttagtaggagt |
277 |
Q |
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| T |
41539367 |
cctcctatcacctcaagatcatccagtgactcaacacggtcagcacttctctttcccaaagctttgttagtaggagt |
41539443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 278
Target Start/End: Original strand, 41539550 - 41539588
Alignment:
| Q |
240 |
tcagcacttctctttcccaaagctttgttagtaggagtt |
278 |
Q |
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| T |
41539550 |
tcagcacttctctttcccaaagctttgctagtcggagtt |
41539588 |
T |
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