View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9465_low_5 (Length: 226)

Name: NF9465_low_5
Description: NF9465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9465_low_5
NF9465_low_5
[»] chr6 (8 HSPs)
chr6 (15-207)||(877208-877400)
chr6 (15-169)||(24737561-24737718)
chr6 (37-169)||(33346266-33346398)
chr6 (92-168)||(18611228-18611304)
chr6 (92-169)||(29157264-29157341)
chr6 (108-165)||(34399683-34399740)
chr6 (92-157)||(15034920-15034990)
chr6 (132-169)||(35119273-35119310)
[»] chr1 (11 HSPs)
chr1 (37-185)||(179630-179778)
chr1 (31-169)||(18056822-18056960)
chr1 (37-167)||(22348079-22348209)
chr1 (41-168)||(23319984-23320111)
chr1 (37-168)||(8402206-8402337)
chr1 (37-169)||(45889634-45889766)
chr1 (68-166)||(30802437-30802535)
chr1 (92-168)||(37639381-37639457)
chr1 (92-168)||(35198131-35198207)
chr1 (92-169)||(16115889-16115966)
chr1 (147-179)||(10497314-10497346)
[»] chr8 (13 HSPs)
chr8 (31-169)||(32987334-32987472)
chr8 (15-169)||(8550542-8550701)
chr8 (37-169)||(4836596-4836728)
chr8 (37-169)||(4842041-4842173)
chr8 (37-169)||(7058152-7058284)
chr8 (37-169)||(39022013-39022145)
chr8 (37-169)||(15260746-15260878)
chr8 (68-168)||(7614107-7614207)
chr8 (37-131)||(2750101-2750195)
chr8 (92-168)||(15181830-15181906)
chr8 (15-79)||(1208829-1208896)
chr8 (111-169)||(1208747-1208805)
chr8 (15-64)||(39658411-39658463)
[»] chr4 (16 HSPs)
chr4 (15-169)||(637892-638049)
chr4 (37-169)||(27764278-27764410)
chr4 (36-169)||(26447306-26447439)
chr4 (31-169)||(4168396-4168536)
chr4 (37-165)||(21097182-21097310)
chr4 (37-169)||(22181140-22181272)
chr4 (37-169)||(45256013-45256145)
chr4 (37-167)||(51836985-51837116)
chr4 (37-169)||(38485567-38485701)
chr4 (68-169)||(36621627-36621728)
chr4 (31-115)||(18923351-18923435)
chr4 (92-168)||(50563679-50563755)
chr4 (120-168)||(6386519-6386567)
chr4 (95-138)||(48077817-48077860)
chr4 (131-169)||(1729604-1729642)
chr4 (147-179)||(49138087-49138119)
[»] scaffold0097 (1 HSPs)
scaffold0097 (31-169)||(13651-13789)
[»] chr3 (14 HSPs)
chr3 (31-169)||(50754044-50754182)
chr3 (37-169)||(52987545-52987677)
chr3 (37-169)||(51362334-51362465)
chr3 (37-165)||(7045196-7045323)
chr3 (39-169)||(39099235-39099365)
chr3 (39-169)||(19385212-19385342)
chr3 (37-166)||(8718142-8718271)
chr3 (37-166)||(9070029-9070158)
chr3 (70-169)||(16277342-16277441)
chr3 (92-168)||(23699367-23699443)
chr3 (92-168)||(23717822-23717898)
chr3 (92-168)||(23736278-23736354)
chr3 (121-169)||(17627210-17627258)
chr3 (92-137)||(23755349-23755394)
[»] chr2 (10 HSPs)
chr2 (31-169)||(20709812-20709950)
chr2 (37-169)||(18298006-18298138)
chr2 (37-169)||(25192930-25193062)
chr2 (92-165)||(4281738-4281811)
chr2 (92-168)||(25995326-25995402)
chr2 (37-79)||(4579721-4579763)
chr2 (111-169)||(14551288-14551346)
chr2 (111-168)||(4579787-4579844)
chr2 (115-166)||(36636910-36636961)
chr2 (120-168)||(5098756-5098804)
[»] chr7 (14 HSPs)
chr7 (31-169)||(30428911-30429049)
chr7 (39-165)||(46573397-46573523)
chr7 (31-169)||(46024065-46024205)
chr7 (37-169)||(15974831-15974963)
chr7 (68-169)||(33797969-33798070)
chr7 (92-169)||(5757425-5757502)
chr7 (92-168)||(32090617-32090693)
chr7 (111-180)||(48691020-48691088)
chr7 (111-169)||(48690933-48690991)
chr7 (37-79)||(48305356-48305398)
chr7 (37-79)||(48691112-48691154)
chr7 (120-168)||(44141229-44141277)
chr7 (37-79)||(28396842-28396884)
chr7 (142-170)||(32090587-32090615)
[»] chr5 (12 HSPs)
chr5 (15-169)||(2826937-2827094)
chr5 (41-169)||(13362808-13362936)
chr5 (37-169)||(23335601-23335734)
chr5 (46-169)||(28070057-28070180)
chr5 (91-168)||(16668743-16668820)
chr5 (31-169)||(25017121-25017244)
chr5 (37-108)||(42512273-42512344)
chr5 (92-168)||(18465506-18465582)
chr5 (111-169)||(34329165-34329223)
chr5 (92-167)||(8948930-8949003)
chr5 (31-79)||(34329247-34329293)
chr5 (141-169)||(42512237-42512265)
[»] scaffold0194 (1 HSPs)
scaffold0194 (31-169)||(27645-27785)
[»] scaffold0238 (1 HSPs)
scaffold0238 (58-169)||(25148-25259)
[»] scaffold0337 (1 HSPs)
scaffold0337 (120-169)||(7055-7104)
[»] scaffold0544 (1 HSPs)
scaffold0544 (120-169)||(10653-10702)


Alignment Details
Target: chr6 (Bit Score: 177; Significance: 1e-95; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 15 - 207
Target Start/End: Complemental strand, 877400 - 877208
Alignment:
Q  15 agagatgaagactcctaattgtagagagagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaag 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  877400 agagatgaagactcctaattgtagagagagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaag 877301  T
Q  115 cttatgattattacacgtgtacacctgatctgatggttgtgaagtgtttatgcaccataacttttgccgtgtcaacctagttgggttgaccga 207  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  877300 cttatgattattatacgtgtacacctgatctaatggttgtgaagtgtttatgcaccataactttttctgtgtcaacctagttgggttgaccga 877208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 15 - 169
Target Start/End: Original strand, 24737561 - 24737718
Alignment:
Q  15 agagatgaagactcct---aattgtagagagagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgag 111  Q
    |||||||||||||| |   |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  24737561 agagatgaagactcatctgaattgtagagagagggagagttttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttaag 24737660  T
Q  112 aagcttatgattattacacgtgtacacctgatctgatggttgtgaagtgtttatgcac 169  Q
    |||| || |||||||||||||||||||  |||||||||||||||||||||||||||||    
T  24737661 aagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcac 24737718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 37 - 169
Target Start/End: Original strand, 33346266 - 33346398
Alignment:
Q  37 agagagagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattacacgtgtac 136  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||| ||| ||||||||||||||||    
T  33346266 agagagagggagaactttatgttttagtgagagaaatgtttgaagcaaacgaagtttgatttgacgtagtttgagaagcctataattattacacgtgtac 33346365  T
Q  137 acctgatctgatggttgtgaagtgtttatgcac 169  Q
    ||  ||| |||||||||||||||||||||||||    
T  33346366 actagatttgatggttgtgaagtgtttatgcac 33346398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 92 - 168
Target Start/End: Complemental strand, 18611304 - 18611228
Alignment:
Q  92 ttgatttggtgtagtttgagaagcttatgattattacacgtgtacacctgatctgatggttgtgaagtgtttatgca 168  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  18611304 ttgatttggtgtggtttgagaagcctatgattattacacgtgtacactagatctgatggttgtgaagtgtttatgca 18611228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 92 - 169
Target Start/End: Complemental strand, 29157341 - 29157264
Alignment:
Q  92 ttgatttggtgtagtttgagaagcttatgattattacacgtgtacacctgatctgatggttgtgaagtgtttatgcac 169  Q
    |||||||||||||||||||||||| ||  ||||||||||||||||||  |||||||||||||| ||||||||||||||    
T  29157341 ttgatttggtgtagtttgagaagcctagtattattacacgtgtacactagatctgatggttgtaaagtgtttatgcac 29157264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 165
Target Start/End: Complemental strand, 34399740 - 34399683
Alignment:
Q  108 tgagaagcttatgattattacacgtgtacacctgatctgatggttgtgaagtgtttat 165  Q
    |||||||| || |||||||||||||||||||  ||||||||| |||||||||||||||    
T  34399740 tgagaagcctaggattattacacgtgtacactagatctgatgattgtgaagtgtttat 34399683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 157
Target Start/End: Original strand, 15034920 - 15034990
Alignment:
Q  92 ttgatttggtgtagtttgaga-----agcttatgattattacacgtgtacacctgatctgatggttgtgaa 157  Q
    |||||||||||||||||||||     ||| |||||||||||||| |||||||  |||||||||||||||||    
T  15034920 ttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaa 15034990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 35119310 - 35119273
Alignment:
Q  132 tgtacacctgatctgatggttgtgaagtgtttatgcac 169  Q
    |||||||  |||||||||||||||||||||||||||||    
T  35119310 tgtacactagatctgatggttgtgaagtgtttatgcac 35119273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 37 - 185
Target Start/End: Complemental strand, 179778 - 179630
Alignment:
Q  37 agagagagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattacacgtgtac 136  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  179778 agagagagggagagctttatgttttagtgagagaaatgttttaagcaaatgaagtttgatttggtgtagtttgagaagcttgggattattacacgtgtac 179679  T
Q  137 acctgatctgatggttgtgaagtgtttatgcaccataacttttgccgtg 185  Q
    ||  |||||||||||||||||||||||||||||||||||||||||||||    
T  179678 actagatctgatggttgtgaagtgtttatgcaccataacttttgccgtg 179630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 31 - 169
Target Start/End: Complemental strand, 18056960 - 18056822
Alignment:
Q  31 aattgtagagagagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattacac 130  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  18056960 aattgtagagagagggagagttttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacac 18056861  T
Q  131 gtgtacacctgatctgatggttgtgaagtgtttatgcac 169  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  18056860 gtgtacactagatctgatggttgtgaagtgtttatgcac 18056822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 37 - 167
Target Start/End: Complemental strand, 22348209 - 22348079
Alignment:
Q  37 agagagagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattacacgtgtac 136  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  22348209 agagagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacgtgtac 22348110  T
Q  137 acctgatctgatggttgtgaagtgtttatgc 167  Q
    ||  ||| |||||||||||||||||||||||    
T  22348109 actagatatgatggttgtgaagtgtttatgc 22348079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 41 - 168
Target Start/End: Original strand, 23319984 - 23320111
Alignment:
Q  41 agagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattacacgtgtacacct 140  Q
    ||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  || |||||||||||||||||||      
T  23319984 agagggatagctttatgttttagtgagagaaatgtttaaagcaaatgaagtttgatttggtgtagtttgagaagtctaggattattacacgtgtacacta 23320083  T
Q  141 gatctgatggttgtgaagtgtttatgca 168  Q
    ||||||||||||||||||||||||||||    
T  23320084 gatctgatggttgtgaagtgtttatgca 23320111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 37 - 168
Target Start/End: Original strand, 8402206 - 8402337
Alignment:
Q  37 agagagagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattacacgtgtac 136  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | || |||||||||| ||||||    
T  8402206 agagagagagagagctttatgttttagtgagagaaatgtttgaagcagatgaagtttgatttggtttagtttgagaaacctaggattattacatgtgtac 8402305  T
Q  137 acctgatctgatggttgtgaagtgtttatgca 168  Q
    ||  |||||||||||| |||||||||||||||    
T  8402306 actagatctgatggttatgaagtgtttatgca 8402337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 37 - 169
Target Start/End: Complemental strand, 45889766 - 45889634
Alignment:
Q  37 agagagagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattacacgtgtac 136  Q
    ||||||||||||| |||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| || ||||||||||| ||||     
T  45889766 agagagagggagaactttatgttttagtgagagaaatgtttgaaggaaatgaaatttgatttggtgtagtttgagaagcctaagattattacacatgtat 45889667  T
Q  137 acctgatctgatggttgtgaagtgtttatgcac 169  Q
    ||  |||||||||||||| || |||||||||||    
T  45889666 actagatctgatggttgtaaaatgtttatgcac 45889634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 68 - 166
Target Start/End: Complemental strand, 30802535 - 30802437
Alignment:
Q  68 agaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattacacgtgtacacctgatctgatggttgtgaagtgtttatg 166  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||  ||||||||||||||||| ||||||||    
T  30802535 agaaatatttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaagattattacacgtgtacactagatctgatggttgtgaaatgtttatg 30802437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 92 - 168
Target Start/End: Complemental strand, 37639457 - 37639381
Alignment:
Q  92 ttgatttggtgtagtttgagaagcttatgattattacacgtgtacacctgatctgatggttgtgaagtgtttatgca 168  Q
    |||||||||||||||||||||||  ||| ||||||||||||||||||  ||||||||||||||||||||||||||||    
T  37639457 ttgatttggtgtagtttgagaagtctataattattacacgtgtacactagatctgatggttgtgaagtgtttatgca 37639381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 92 - 168
Target Start/End: Original strand, 35198131 - 35198207
Alignment:
Q  92 ttgatttggtgtagtttgagaagcttatgattattacacgtgtacacctgatctgatggttgtgaagtgtttatgca 168  Q
    ||||||| ||||||||||| |||  || |||||||||||||||||||  |||||||||| |||||||||||||||||    
T  35198131 ttgattttgtgtagtttgaaaagtctaggattattacacgtgtacactagatctgatggctgtgaagtgtttatgca 35198207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 92 - 169
Target Start/End: Complemental strand, 16115966 - 16115889
Alignment:
Q  92 ttgatttggtgtagtttgagaagcttatgattattacacgtgtacacctgatctgatggttgtgaagtgtttatgcac 169  Q
    ||||||||||||||||| |||||  |  ||||||||||||||||||   ||| |||||||||||||||||||||||||    
T  16115966 ttgatttggtgtagtttaagaagtcttggattattacacgtgtacattagatttgatggttgtgaagtgtttatgcac 16115889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 179
Target Start/End: Complemental strand, 10497346 - 10497314
Alignment:
Q  147 atggttgtgaagtgtttatgcaccataactttt 179  Q
    ||||||||||||||||||| |||||||||||||    
T  10497346 atggttgtgaagtgtttatccaccataactttt 10497314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 115; Significance: 1e-58; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 31 - 169
Target Start/End: Original strand, 32987334 - 32987472
Alignment:
Q  31 aattgtagagagagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattacac 130  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  32987334 aattgtagagagagggagagctttatgttttagttagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacac 32987433  T
Q  131 gtgtacacctgatctgatggttgtgaagtgtttatgcac 169  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  32987434 gtgtacactagatctgatggttgtgaagtgtttatgcac 32987472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 15 - 169
Target Start/End: Complemental strand, 8550701 - 8550542
Alignment:
Q  15 agagatgaagactcct---aattgtagaga--gagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttg 109  Q
    |||||||||||||| |   |||||||||||  |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8550701 agagatgaagactcatctgaattgtagagaaagagggagaactttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtaatttg 8550602  T
Q  110 agaagcttatgattattacacgtgtacacctgatctgatggttgtgaagtgtttatgcac 169  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  8550601 agaagcttatgattattacacgtgtacactagatctgatggttgtgaagtgtttatgcac 8550542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 37 - 169
Target Start/End: Original strand, 4836596 - 4836728
Alignment:
Q  37 agagagagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattacacgtgtac 136  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  4836596 agagagagggagagctttatgttttagtgagataaatgtttgaagcaaatgaagtttgatttggtgtagtttgaaaagcttaggattattacacgtgtac 4836695  T
Q  137 acctgatctgatggttgtgaagtgtttatgcac 169  Q
    ||  |||||||||||||||||||||||||||||    
T  4836696 actagatctgatggttgtgaagtgtttatgcac 4836728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 37 - 169
Target Start/End: Original strand, 4842041 - 4842173
Alignment:
Q  37 agagagagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattacacgtgtac 136  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  4842041 agagagagggagagctttatgttttagtgagataaatgtttgaagcaaatgaagtttgatttggtgtagtttgaaaagcttaggattattacacgtgtac 4842140  T
Q  137 acctgatctgatggttgtgaagtgtttatgcac 169  Q
    ||  |||||||||||||||||||||||||||||    
T  4842141 actagatctgatggttgtgaagtgtttatgcac 4842173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 37 - 169
Target Start/End: Complemental strand, 7058284 - 7058152
Alignment:
Q  37 agagagagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattacacgtgtac 136  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||||||    
T  7058284 agagagagggagagctttatgttttagtgagagaagtgtttgaagcaaatgaagtttgatttggtgtagtttgagaagtctaggattattacacgtgtac 7058185  T
Q  137 acctgatctgatggttgtgaagtgtttatgcac 169  Q
    ||  |||| ||||||||||||||||||||||||    
T  7058184 actagatcggatggttgtgaagtgtttatgcac 7058152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 37 - 169
Target Start/End: Complemental strand, 39022145 - 39022013
Alignment:
Q  37 agagagagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattacacgtgtac 136  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||    
T  39022145 agagagagggagagctttatgttttagtgagataaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacatgtac 39022046  T
Q  137 acctgatctgatggttgtgaagtgtttatgcac 169  Q
    ||  ||||||||| |||||||||||||||||||    
T  39022045 actagatctgatgattgtgaagtgtttatgcac 39022013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 37 - 169
Target Start/End: Original strand, 15260746 - 15260878
Alignment:
Q  37 agagagagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattacacgtgtac 136  Q
    |||||||||||||| ||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |  |||||||| ||||||||    
T  15260746 agagagagggagagttttatattttagtgagagaaatatttgaagcaaatgaagtttgatttggtgtagtttgagaagccttggattattaaacgtgtac 15260845  T
Q  137 acctgatctgatggttgtgaagtgtttatgcac 169  Q
    ||  ||| |||||||||||||||||||||||||    
T  15260846 actagatttgatggttgtgaagtgtttatgcac 15260878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 68 - 168
Target Start/End: Complemental strand, 7614207 - 7614107
Alignment:
Q  68 agaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattacacgtgtacacctgatctgatggttgtgaagtgtttatgc 167  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||   |||||||||||||||||||||||||||    
T  7614207 agaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctatgattattacacgtgtacattagatctgatggttgtgaagtgtttatgc 7614108  T
Q  168 a 168  Q
    |    
T  7614107 a 7614107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 37 - 131
Target Start/End: Complemental strand, 2750195 - 2750101
Alignment:
Q  37 agagagagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattacacg 131  Q
    |||| |||||||||| || |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||  |||||||||||||||    
T  2750195 agagtgagggagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttgagaagtctatgattattacacg 2750101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 92 - 168
Target Start/End: Complemental strand, 15181906 - 15181830
Alignment:
Q  92 ttgatttggtgtagtttgagaagcttatgattattacacgtgtacacctgatctgatggttgtgaagtgtttatgca 168  Q
    |||||||||||||||||||||| | || |||||||||||||||||||  ||||||||| ||||||||||||||||||    
T  15181906 ttgatttggtgtagtttgagaaacctaagattattacacgtgtacactagatctgatgcttgtgaagtgtttatgca 15181830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 1208896 - 1208829
Alignment:
Q  15 agagatgaagactcct---aattgtagagagagggagagctttttgttttagtgagagaaatgtttga 79  Q
    |||||||||||||| |   |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1208896 agagatgaagactcatctgaattgtagagagagggagagctttatgttttagtgagagaaatgtttga 1208829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 111 - 169
Target Start/End: Complemental strand, 1208805 - 1208747
Alignment:
Q  111 gaagcttatgattattacacgtgtacacctgatctgatggttgtgaagtgtttatgcac 169  Q
    ||||| || |||||||||||||||||||  ||||| |||||||| ||||||||||||||    
T  1208805 gaagcctaggattattacacgtgtacactagatcttatggttgtaaagtgtttatgcac 1208747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 39658411 - 39658463
Alignment:
Q  15 agagatgaagactcct---aattgtagagagagggagagctttttgttttagt 64  Q
    |||||||||||||| |   |||||||||||||||||||||||| |||||||||    
T  39658411 agagatgaagactcatttgaattgtagagagagggagagctttatgttttagt 39658463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 9e-57; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 15 - 169
Target Start/End: Complemental strand, 638049 - 637892
Alignment:
Q  15 agagatgaagactcct---aattgtagagagagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgag 111  Q
    |||||||||||||| |   |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  638049 agagatgaagactcatctaaattgtagagagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgag 637950  T
Q  112 aagcttatgattattacacgtgtacacctgatctgatggttgtgaagtgtttatgcac 169  Q
    |||| ||  |||||||||| |||||||  |||||||||||||||||||||||||||||    
T  637949 aagcctaaaattattacacatgtacactagatctgatggttgtgaagtgtttatgcac 637892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 37 - 169
Target Start/End: Complemental strand, 27764410 - 27764278
Alignment:
Q  37 agagagagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattacacgtgtac 136  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| || |||||||||||||||||    
T  27764410 agagagagggagaactttatgttttagtgagagaaatgtttgaagcaaataaggtttgatttggtgtagtttgagaagcgtaggattattacacgtgtac 27764311  T
Q  137 acctgatctgatggttgtgaagtgtttatgcac 169  Q
    ||  ||||||||||||| |||||||||||||||    
T  27764310 actagatctgatggttgcgaagtgtttatgcac 27764278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 36 - 169
Target Start/End: Original strand, 26447306 - 26447439
Alignment:
Q  36 tagagagagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattacacgtgta 135  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||| ||  |||||||||||||||    
T  26447306 tagagagagggagaactttatgttttagtgagagaaatgtttgaagcaaatgaaatttgatttggtgtaatttgtgaagcctagaattattacacgtgta 26447405  T
Q  136 cacctgatctgatggttgtgaagtgtttatgcac 169  Q
    |||  |||||||||||||||||||||||||||||    
T  26447406 cactagatctgatggttgtgaagtgtttatgcac 26447439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 31 - 169
Target Start/End: Complemental strand, 4168536 - 4168396
Alignment:
Q  31 aattgtagaga--gagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattac 128  Q
    |||||||||||  ||| || |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | || |||||||||    
T  4168536 aattgtagagatagagtgaaagctttatgttttagtgagagaaatgtttgaaacaaatgaagtttgatttggtgtagtttgagaaacctaggattattac 4168437  T
Q  129 acgtgtacacctgatctgatggttgtgaagtgtttatgcac 169  Q
    | ||||||||  |||||||||||||||||||||||||||||    
T  4168436 atgtgtacactagatctgatggttgtgaagtgtttatgcac 4168396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 37 - 165
Target Start/End: Complemental strand, 21097310 - 21097182
Alignment:
Q  37 agagagagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattacacgtgtac 136  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||  |||||||||||||||     
T  21097310 agagagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtaatttaataagcttagaattattacacgtgtaa 21097211  T
Q  137 acctgatctgatggttgtgaagtgtttat 165  Q
    ||  ||||| |||||||||||||||||||    
T  21097210 actagatctaatggttgtgaagtgtttat 21097182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 37 - 169
Target Start/End: Original strand, 22181140 - 22181272
Alignment:
Q  37 agagagagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattacacgtgtac 136  Q
    ||||||||| | |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | || |||||||||||||||||    
T  22181140 agagagaggaaaagctttatgttttagtgagagaaatgtttgaggcaaatgaagtttgatttggtgtagtttgagaaacctaggattattacacgtgtac 22181239  T
Q  137 acctgatctgatggttgtgaagtgtttatgcac 169  Q
    ||   |||||||||||||||||| |||||||||    
T  22181240 actaaatctgatggttgtgaagtttttatgcac 22181272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 37 - 169
Target Start/End: Complemental strand, 45256145 - 45256013
Alignment:
Q  37 agagagagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattacacgtgtac 136  Q
    |||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| || |||||||||||||||||    
T  45256145 agagagggggggagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttgatgtagtttgaaaagcctaggattattacacgtgtac 45256046  T
Q  137 acctgatctgatggttgtgaagtgtttatgcac 169  Q
    ||   ||||||| ||||||||||||||||||||    
T  45256045 actatatctgatagttgtgaagtgtttatgcac 45256013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 37 - 167
Target Start/End: Original strand, 51836985 - 51837116
Alignment:
Q  37 agagagagggagagctttttgttttagtgagagaaatgtttgaagcaaa-tgaagtttgatttggtgtagtttgagaagcttatgattattacacgtgta 135  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| || ||||||||||||||||    
T  51836985 agagagagggagagctttatgttttagtgagagaaatgtttgaagtaaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacgtgta 51837084  T
Q  136 cacctgatctgatggttgtgaagtgtttatgc 167  Q
    ||    |||||||||||||||||| |||||||    
T  51837085 cattaaatctgatggttgtgaagtatttatgc 51837116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 37 - 169
Target Start/End: Original strand, 38485567 - 38485701
Alignment:
Q  37 agagagagggagagctttttgtttt--agtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattacacgtgt 134  Q
    ||||||||||||| |||| ||||||  |||||||||||||||||||||||||||||||||||||  |||| |||||||||| || |||||||||||||||    
T  38485567 agagagagggagatctttatgttttttagtgagagaaatgtttgaagcaaatgaagtttgatttaatgtattttgagaagcctaggattattacacgtgt 38485666  T
Q  135 acacctgatctgatggttgtgaagtgtttatgcac 169  Q
    |||   |||||||||||||||||| ||||||||||    
T  38485667 acattagatctgatggttgtgaagcgtttatgcac 38485701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 68 - 169
Target Start/End: Original strand, 36621627 - 36621728
Alignment:
Q  68 agaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattacacgtgtacacctgatctgatggttgtgaagtgtttatgc 167  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||   |||||||||||||||||||||||||||    
T  36621627 agaaatgtttgaagcaaatgaagtttgatttggtgtagtttaagaagcataggattattacacgtgtacattagatctgatggttgtgaagtgtttatgc 36621726  T
Q  168 ac 169  Q
    ||    
T  36621727 ac 36621728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 31 - 115
Target Start/End: Complemental strand, 18923435 - 18923351
Alignment:
Q  31 aattgtagagagagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagc 115  Q
    ||||||||||||||||| || ||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  18923435 aattgtagagagagggatagttttatgttttagtgacagaaatatttgaagcaaatgaagtttgatttggtgtagtttgagaagc 18923351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 92 - 168
Target Start/End: Original strand, 50563679 - 50563755
Alignment:
Q  92 ttgatttggtgtagtttgagaagcttatgattattacacgtgtacacctgatctgatggttgtgaagtgtttatgca 168  Q
    |||||||||||||||||||||| | ||| ||||||||||||||||||  ||||||||||||||||||||||||||||    
T  50563679 ttgatttggtgtagtttgagaaacctataattattacacgtgtacactagatctgatggttgtgaagtgtttatgca 50563755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 6386519 - 6386567
Alignment:
Q  120 gattattacacgtgtacacctgatctgatggttgtgaagtgtttatgca 168  Q
    ||||||||||||||| |||   |||||||||||||||||||||||||||    
T  6386519 gattattacacgtgtccactaaatctgatggttgtgaagtgtttatgca 6386567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 138
Target Start/End: Original strand, 48077817 - 48077860
Alignment:
Q  95 atttggtgtagtttgagaagcttatgattattacacgtgtacac 138  Q
    ||||||||||||||||||||| || ||||||||||| |||||||    
T  48077817 atttggtgtagtttgagaagcctaggattattacacatgtacac 48077860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 169
Target Start/End: Original strand, 1729604 - 1729642
Alignment:
Q  131 gtgtacacctgatctgatggttgtgaagtgtttatgcac 169  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  1729604 gtgtacactagatctgatggttgtgaagtgtttatgcac 1729642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 179
Target Start/End: Original strand, 49138087 - 49138119
Alignment:
Q  147 atggttgtgaagtgtttatgcaccataactttt 179  Q
    |||||||||||||||||||||||| ||||||||    
T  49138087 atggttgtgaagtgtttatgcaccgtaactttt 49138119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 31 - 169
Target Start/End: Complemental strand, 13789 - 13651
Alignment:
Q  31 aattgtagagagagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattacac 130  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||     
T  13789 aattgtagagagagggagaactttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcgtaggattattacat 13690  T
Q  131 gtgtacacctgatctgatggttgtgaagtgtttatgcac 169  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  13689 gtgtacactagatctgatggttgtgaagtgtttatgcac 13651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 4e-56; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 31 - 169
Target Start/End: Complemental strand, 50754182 - 50754044
Alignment:
Q  31 aattgtagagagagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattacac 130  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| || |||||||||||    
T  50754182 aattgtagagagagggagagctttatgttttagtgagagaagtgtttgaatcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacac 50754083  T
Q  131 gtgtacacctgatctgatggttgtgaagtgtttatgcac 169  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  50754082 gtgtacactagatctgatggttgtgaagtgtttatgcac 50754044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 37 - 169
Target Start/End: Original strand, 52987545 - 52987677
Alignment:
Q  37 agagagagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattacacgtgtac 136  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  52987545 agagagagggagagctttatgttttagtgagagaaatatttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacgtgtac 52987644  T
Q  137 acctgatctgatggttgtgaagtgtttatgcac 169  Q
    ||  |||||||||||||||||||||||||||||    
T  52987645 actagatctgatggttgtgaagtgtttatgcac 52987677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 37 - 169
Target Start/End: Original strand, 51362334 - 51362465
Alignment:
Q  37 agagagagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattacacgtgtac 136  Q
    ||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  51362334 agagagagggaaag-tttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacgtgtac 51362432  T
Q  137 acctgatctgatggttgtgaagtgtttatgcac 169  Q
    ||   ||||||||||||||||||||||||||||    
T  51362433 actaaatctgatggttgtgaagtgtttatgcac 51362465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 37 - 165
Target Start/End: Original strand, 7045196 - 7045323
Alignment:
Q  37 agagagagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattacacgtgtac 136  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||| || |||||||||||||||||    
T  7045196 agagagagggagagctttatgttttagtgagagaaatgtttgaagcaaat-aagtttgatttgatgtagtctgagaagcctacgattattacacgtgtac 7045294  T
Q  137 acctgatctgatggttgtgaagtgtttat 165  Q
    ||  |||||||||||||||||||||||||    
T  7045295 actagatctgatggttgtgaagtgtttat 7045323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 39 - 169
Target Start/End: Complemental strand, 39099365 - 39099235
Alignment:
Q  39 agagagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattacacgtgtacac 138  Q
    |||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||| || |||||||||||||||||||    
T  39099365 agagagggagagctttatgttttagtgagagaaatgttttaaacaaatgaagtttgatttagtgtagtttgagaagcctaggattattacacgtgtacac 39099266  T
Q  139 ctgatctgatggttgtgaagtgtttatgcac 169  Q
      ||||||||||||||||| | |||||||||    
T  39099265 tagatctgatggttgtgaaatatttatgcac 39099235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 39 - 169
Target Start/End: Original strand, 19385212 - 19385342
Alignment:
Q  39 agagagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattacacgtgtacac 138  Q
    |||||||||||| ||| |||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||| ||  ||||||||||||||||||    
T  19385212 agagagggagagttttatgttttagtgagggaaatgattgaagcaaatgaagtttgatttgatgtagtttgagaagcctagaattattacacgtgtacac 19385311  T
Q  139 ctgatctgatggttgtgaagtgtttatgcac 169  Q
       ||||||||||||||||||||||||||||    
T  19385312 taaatctgatggttgtgaagtgtttatgcac 19385342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 37 - 166
Target Start/End: Complemental strand, 8718271 - 8718142
Alignment:
Q  37 agagagagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattacacgtgtac 136  Q
    ||||||||||| |||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||| || ||||||||||| |||||    
T  8718271 agagagagggaaagctttatgttttagtgagagaaatgttttaaacaaatgaagtttgatttggtgtagtttaagaagcctaggattattacacatgtac 8718172  T
Q  137 acctgatctgatggttgtgaagtgtttatg 166  Q
    ||  ||||||||||||||||||| ||||||    
T  8718171 actagatctgatggttgtgaagtatttatg 8718142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 37 - 166
Target Start/End: Complemental strand, 9070158 - 9070029
Alignment:
Q  37 agagagagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattacacgtgtac 136  Q
    ||||||||||| |||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||| || ||||||||||| |||||    
T  9070158 agagagagggaaagctttatgttttagtgagagaaatgttttaaacaaatgaagtttgatttggtgtagtttaagaagcctaggattattacacatgtac 9070059  T
Q  137 acctgatctgatggttgtgaagtgtttatg 166  Q
    ||  ||||||||||||||||||| ||||||    
T  9070058 actagatctgatggttgtgaagtatttatg 9070029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 70 - 169
Target Start/End: Original strand, 16277342 - 16277441
Alignment:
Q  70 aaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattacacgtgtacacctgatctgatggttgtgaagtgtttatgcac 169  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||  ||| |||||||||||||||||||||||||    
T  16277342 aaatgtttgaaacaaatgaagtttgatttggtgtagtttgagaagcgtaggattattacacgtgtacactagatatgatggttgtgaagtgtttatgcac 16277441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 92 - 168
Target Start/End: Complemental strand, 23699443 - 23699367
Alignment:
Q  92 ttgatttggtgtagtttgagaagcttatgattattacacgtgtacacctgatctgatggttgtgaagtgtttatgca 168  Q
    |||||||| |||||||||| |||| || ||||||||||||||||||   ||| ||||||||||||||||||||||||    
T  23699443 ttgatttgatgtagtttgaaaagcctaggattattacacgtgtacattagatatgatggttgtgaagtgtttatgca 23699367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 92 - 168
Target Start/End: Complemental strand, 23717898 - 23717822
Alignment:
Q  92 ttgatttggtgtagtttgagaagcttatgattattacacgtgtacacctgatctgatggttgtgaagtgtttatgca 168  Q
    |||||||| |||||||||| |||| || ||||||||||||||||||   ||| ||||||||||||||||||||||||    
T  23717898 ttgatttgatgtagtttgaaaagcctaggattattacacgtgtacattagatatgatggttgtgaagtgtttatgca 23717822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 92 - 168
Target Start/End: Complemental strand, 23736354 - 23736278
Alignment:
Q  92 ttgatttggtgtagtttgagaagcttatgattattacacgtgtacacctgatctgatggttgtgaagtgtttatgca 168  Q
    |||||||| |||||||||| |||| || ||||||||||||||||||   ||| ||||||||||||||||||||||||    
T  23736354 ttgatttgatgtagtttgaaaagcctaggattattacacgtgtacattagatatgatggttgtgaagtgtttatgca 23736278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 17627210 - 17627258
Alignment:
Q  121 attattacacgtgtacacctgatctgatggttgtgaagtgtttatgcac 169  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||    
T  17627210 attattacacgtgtacactagatctgatggttgtgaagtgtttatgcac 17627258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 23755394 - 23755349
Alignment:
Q  92 ttgatttggtgtagtttgagaagcttatgattattacacgtgtaca 137  Q
    |||||||| |||| |||||||||| || ||||||||||||||||||    
T  23755394 ttgatttgatgtaatttgagaagcctaggattattacacgtgtaca 23755349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 31 - 169
Target Start/End: Complemental strand, 20709950 - 20709812
Alignment:
Q  31 aattgtagagagagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattacac 130  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||     
T  20709950 aattgtagagagagggagaactttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcgtaggattattacat 20709851  T
Q  131 gtgtacacctgatctgatggttgtgaagtgtttatgcac 169  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  20709850 gtgtacactagatctgatggttgtgaagtgtttatgcac 20709812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 37 - 169
Target Start/End: Original strand, 18298006 - 18298138
Alignment:
Q  37 agagagagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattacacgtgtac 136  Q
    |||||||||||||| ||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  18298006 agagagagggagagatttatgttttagtgagagaaacgcttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacgtgtac 18298105  T
Q  137 acctgatctgatggttgtgaagtgtttatgcac 169  Q
    ||  |||||||||||||||||||||||||||||    
T  18298106 actagatctgatggttgtgaagtgtttatgcac 18298138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 37 - 169
Target Start/End: Complemental strand, 25193062 - 25192930
Alignment:
Q  37 agagagagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattacacgtgtac 136  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||  ||||||||||||||||    
T  25193062 agagagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtaatttgagaagcctagaattattacacgtgtac 25192963  T
Q  137 acctgatctgatggttgtgaagtgtttatgcac 169  Q
    ||  ||||| |||||||||||||||||||||||    
T  25192962 actagatctaatggttgtgaagtgtttatgcac 25192930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 92 - 165
Target Start/End: Original strand, 4281738 - 4281811
Alignment:
Q  92 ttgatttggtgtagtttgagaagcttatgattattacacgtgtacacctgatctgatggttgtgaagtgtttat 165  Q
    |||||||| ||||||||||||| | || |||||||||||||||||||  |||||||||||||||||||||||||    
T  4281738 ttgatttgctgtagtttgagaaacctaggattattacacgtgtacactagatctgatggttgtgaagtgtttat 4281811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 92 - 168
Target Start/End: Complemental strand, 25995402 - 25995326
Alignment:
Q  92 ttgatttggtgtagtttgagaagcttatgattattacacgtgtacacctgatctgatggttgtgaagtgtttatgca 168  Q
    ||||||||||||| |||||| ||| || |||||||||||||||||||   |||||||||||||||||| ||||||||    
T  25995402 ttgatttggtgtaatttgagtagcctaggattattacacgtgtacactaaatctgatggttgtgaagtatttatgca 25995326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 79
Target Start/End: Original strand, 4579721 - 4579763
Alignment:
Q  37 agagagagggagagctttttgttttagtgagagaaatgtttga 79  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  4579721 agagagagggagagctttatgttttagtgagagaaatgtttga 4579763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 169
Target Start/End: Original strand, 14551288 - 14551346
Alignment:
Q  111 gaagcttatgattattacacgtgtacacctgatctgatggttgtgaagtgtttatgcac 169  Q
    ||||| || ||||||||||| |||||||  |||||||||||||||||||||||||||||    
T  14551288 gaagcctaggattattacacatgtacactagatctgatggttgtgaagtgtttatgcac 14551346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 168
Target Start/End: Original strand, 4579787 - 4579844
Alignment:
Q  111 gaagcttatgattattacacgtgtacacctgatctgatggttgtgaagtgtttatgca 168  Q
    ||||| || |||||||||||||||||||  |||||||||||||| |||||||||||||    
T  4579787 gaagcataagattattacacgtgtacactagatctgatggttgtaaagtgtttatgca 4579844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 36636910 - 36636961
Alignment:
Q  115 cttatgattattacacgtgtacacctgatctgatggttgtgaagtgtttatg 166  Q
    |||| |||||||||||||||| | |  |||||||||||||||||||||||||    
T  36636910 cttaggattattacacgtgtaaaacaaatctgatggttgtgaagtgtttatg 36636961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 5098804 - 5098756
Alignment:
Q  120 gattattacacgtgtacacctgatctgatggttgtgaagtgtttatgca 168  Q
    ||||||||||||||||||    || ||||||||||||||||||||||||    
T  5098804 gattattacacgtgtacaataaatttgatggttgtgaagtgtttatgca 5098756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 107; Significance: 9e-54; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 31 - 169
Target Start/End: Complemental strand, 30429049 - 30428911
Alignment:
Q  31 aattgtagagagagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattacac 130  Q
    |||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  30429049 aattgtagagagagggggagctttatgttttagtgagataaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacac 30428950  T
Q  131 gtgtacacctgatctgatggttgtgaagtgtttatgcac 169  Q
    ||||||||  ||||||||||||||||| |||||||||||    
T  30428949 gtgtacactagatctgatggttgtgaaatgtttatgcac 30428911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 39 - 165
Target Start/End: Original strand, 46573397 - 46573523
Alignment:
Q  39 agagagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattacacgtgtacac 138  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  46573397 agagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacgtgtacac 46573496  T
Q  139 ctgatctgatggttgtgaagtgtttat 165  Q
      |||||||||||||||||||||||||    
T  46573497 tagatctgatggttgtgaagtgtttat 46573523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 31 - 169
Target Start/End: Complemental strand, 46024205 - 46024065
Alignment:
Q  31 aattgtagaga--gagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattac 128  Q
    |||||||||||  |||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||  || |||||||||    
T  46024205 aattgtagagatagagggagaactttatgttttagtgagagaaatatttgaagcaaatgaagtttgatttaatgtagtttgagaagtctaggattattac 46024106  T
Q  129 acgtgtacacctgatctgatggttgtgaagtgtttatgcac 169  Q
    ||||||||||   ||||||||||||||||||||||||||||    
T  46024105 acgtgtacactatatctgatggttgtgaagtgtttatgcac 46024065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 37 - 169
Target Start/End: Original strand, 15974831 - 15974963
Alignment:
Q  37 agagagagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattacacgtgtac 136  Q
    |||||| | ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||| || |||||||||| ||||||    
T  15974831 agagagggagagagctttatgttttagtgagagaaatgtttgaagcagatgaagtttgatttggtgtactttgataagcctaagattattacatgtgtac 15974930  T
Q  137 acctgatctgatggttgtgaagtgtttatgcac 169  Q
    ||   || |||||||||||||||||||||||||    
T  15974931 actaaatatgatggttgtgaagtgtttatgcac 15974963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 68 - 169
Target Start/End: Complemental strand, 33798070 - 33797969
Alignment:
Q  68 agaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattacacgtgtacacctgatctgatggttgtgaagtgtttatgc 167  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||  || |||||||||||||||| ||  ||||||||||||||||| |||||||||    
T  33798070 agaaatgtttgaagcaaatgaagtttgatttgatgtagtttgagaagtctaggattattacacgtgtatactagatctgatggttgtgaaatgtttatgc 33797971  T
Q  168 ac 169  Q
    ||    
T  33797970 ac 33797969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 92 - 169
Target Start/End: Complemental strand, 5757502 - 5757425
Alignment:
Q  92 ttgatttggtgtagtttgagaagcttatgattattacacgtgtacacctgatctgatggttgtgaagtgtttatgcac 169  Q
    |||||||||||||||||||||||  || |||||||||||||||||||  |||||||||||||||||||||||||||||    
T  5757502 ttgatttggtgtagtttgagaagtctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcac 5757425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 92 - 168
Target Start/End: Complemental strand, 32090693 - 32090617
Alignment:
Q  92 ttgatttggtgtagtttgagaagcttatgattattacacgtgtacacctgatctgatggttgtgaagtgtttatgca 168  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||  ||| |||||||| |||| ||||||||||    
T  32090693 ttgatttggtgtagtttgagaagcctatgattattacacgtgtatactagatttgatggttctgaattgtttatgca 32090617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 111 - 180
Target Start/End: Complemental strand, 48691088 - 48691020
Alignment:
Q  111 gaagcttatgattattacacgtgtacacctgatctgatggttgtgaagtgtttatgcaccataacttttg 180  Q
    ||||| || |||||||||||||||||||  ||||||||||||||||||||| |||||| |||||||||||    
T  48691088 gaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtctatgca-cataacttttg 48691020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 169
Target Start/End: Complemental strand, 48690991 - 48690933
Alignment:
Q  111 gaagcttatgattattacacgtgtacacctgatctgatggttgtgaagtgtttatgcac 169  Q
    ||||| ||||||||||||||||||||||  ||| ||||||||||||| |||||||||||    
T  48690991 gaagcctatgattattacacgtgtacactagatttgatggttgtgaactgtttatgcac 48690933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 79
Target Start/End: Complemental strand, 48305398 - 48305356
Alignment:
Q  37 agagagagggagagctttttgttttagtgagagaaatgtttga 79  Q
    |||||||||||||||||| ||||||| ||||||||||||||||    
T  48305398 agagagagggagagctttatgttttattgagagaaatgtttga 48305356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 79
Target Start/End: Complemental strand, 48691154 - 48691112
Alignment:
Q  37 agagagagggagagctttttgttttagtgagagaaatgtttga 79  Q
    |||||||||||||||||| |||||||||||||||||| |||||    
T  48691154 agagagagggagagctttatgttttagtgagagaaatttttga 48691112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 44141229 - 44141277
Alignment:
Q  120 gattattacacgtgtacacctgatctgatggttgtgaagtgtttatgca 168  Q
    |||||||||||||||||||   ||| |||||||||||||||||||||||    
T  44141229 gattattacacgtgtacactaaatcagatggttgtgaagtgtttatgca 44141277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 79
Target Start/End: Complemental strand, 28396884 - 28396842
Alignment:
Q  37 agagagagggagagctttttgttttagtgagagaaatgtttga 79  Q
    ||||||||||||| |||| ||||||| ||||||||||||||||    
T  28396884 agagagagggagaactttatgttttattgagagaaatgtttga 28396842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 170
Target Start/End: Original strand, 32090587 - 32090615
Alignment:
Q  142 atctgatggttgtgaagtgtttatgcacc 170  Q
    |||||||||||||||||||||||||||||    
T  32090587 atctgatggttgtgaagtgtttatgcacc 32090615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 5e-52; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 15 - 169
Target Start/End: Original strand, 2826937 - 2827094
Alignment:
Q  15 agagatgaagactcct---aattgtagagagagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgag 111  Q
    |||||||||||||| |   |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  2826937 agagatgaagactcatttgaattgtagagagagggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttgag 2827036  T
Q  112 aagcttatgattattacacgtgtacacctgatctgatggttgtgaagtgtttatgcac 169  Q
    |||| || ||| |||||||||||||||  |||||||||||||| ||||||||||||||    
T  2827037 aagcctaagataattacacgtgtacactagatctgatggttgtaaagtgtttatgcac 2827094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 41 - 169
Target Start/End: Complemental strand, 13362936 - 13362808
Alignment:
Q  41 agagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattacacgtgtacacct 140  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||      
T  13362936 agagggaaagctttatgttttagtgagagaaatgtttgaagcaaatgaattttgatttggtgtagtttgagaagcctatgattattacacgtatacacta 13362837  T
Q  141 gatctgatggttgtgaagtgtttatgcac 169  Q
    |||||||||||||||||||||||||||||    
T  13362836 gatctgatggttgtgaagtgtttatgcac 13362808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 37 - 169
Target Start/End: Original strand, 23335601 - 23335734
Alignment:
Q  37 agagagagggagagctttttgtttt-agtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattacacgtgta 135  Q
    |||||||||||||||||| |||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  23335601 agagagagggagagctttatgtttttagtgagagaaatgtttgatgcaaatgaactttgatttggtgtagtttgagaagcctatgattattacacgtgta 23335700  T
Q  136 cacctgatctgatggttgtgaagtgtttatgcac 169  Q
    |||  ||||||||||||||||| |||||||||||    
T  23335701 cactagatctgatggttgtgaaatgtttatgcac 23335734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 46 - 169
Target Start/End: Original strand, 28070057 - 28070180
Alignment:
Q  46 gagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattacacgtgtacacctgatct 145  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||||||||  |||||    
T  28070057 gagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagtctaggattattacacgtgtacactagatct 28070156  T
Q  146 gatggttgtgaagtgtttatgcac 169  Q
    ||| ||||||||||||||||||||    
T  28070157 gatagttgtgaagtgtttatgcac 28070180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 91 - 168
Target Start/End: Original strand, 16668743 - 16668820
Alignment:
Q  91 tttgatttggtgtagtttgagaagcttatgattattacacgtgtacacctgatctgatggttgtgaagtgtttatgca 168  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||  ||||||||||||||||||||||||||||    
T  16668743 tttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgca 16668820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 31 - 169
Target Start/End: Original strand, 25017121 - 25017244
Alignment:
Q  31 aattgtagagagagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattacac 130  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||               ||| | ||  ||||||||||    
T  25017121 aattgtagagagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttga---------------gaaacctaaaattattacac 25017205  T
Q  131 gtgtacacctgatctgatggttgtgaagtgtttatgcac 169  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  25017206 gtgtacactagatctgatggttgtgaagtgtttatgcac 25017244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 42512344 - 42512273
Alignment:
Q  37 agagagagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagttt 108  Q
    ||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  42512344 agagagagggagagctttaggttttagtgagagaaatgtttgaagtaaatgaagtttgatttggtgtagttt 42512273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 92 - 168
Target Start/End: Original strand, 18465506 - 18465582
Alignment:
Q  92 ttgatttggtgtagtttgagaagcttatgattattacacgtgtacacctgatctgatggttgtgaagtgtttatgca 168  Q
    |||||||||||||||||||||||  || |||||||||||||||||||  ||||||||||||||||||||||||||||    
T  18465506 ttgatttggtgtagtttgagaagtctaagattattacacgtgtacactagatctgatggttgtgaagtgtttatgca 18465582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 169
Target Start/End: Complemental strand, 34329223 - 34329165
Alignment:
Q  111 gaagcttatgattattacacgtgtacacctgatctgatggttgtgaagtgtttatgcac 169  Q
    ||||| |||||||||||  |||||||||  |||||||||||||||||||||||||||||    
T  34329223 gaagcctatgattattattcgtgtacactagatctgatggttgtgaagtgtttatgcac 34329165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 167
Target Start/End: Complemental strand, 8949003 - 8948930
Alignment:
Q  92 ttgatttggtgtagtttgagaagcttatgattattacacgtgtacacctgatctgatggttgtgaagtgtttatgc 167  Q
    |||||||||||||||||||||||| || ||||||  |||||||||||   ||||||| ||| ||||||||||||||    
T  8949003 ttgatttggtgtagtttgagaagcctaggattat--cacgtgtacactaaatctgatagttttgaagtgtttatgc 8948930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 34329293 - 34329247
Alignment:
Q  31 aattgtagagagagggagagctttttgttttagtgagagaaatgtttga 79  Q
    ||||||||||||||  |||||||| ||||||||||||||||||||||||    
T  34329293 aattgtagagagag--agagctttatgttttagtgagagaaatgtttga 34329247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 169
Target Start/End: Complemental strand, 42512265 - 42512237
Alignment:
Q  141 gatctgatggttgtgaagtgtttatgcac 169  Q
    |||||||||||||||||||||||||||||    
T  42512265 gatctgatggttgtgaagtgtttatgcac 42512237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 31 - 169
Target Start/End: Complemental strand, 27785 - 27645
Alignment:
Q  31 aattgtagaga--gagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattac 128  Q
    |||||||||||  ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||    
T  27785 aattgtagagaaagagggagagatttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctagaattattac 27686  T
Q  129 acgtgtacacctgatctgatggttgtgaagtgtttatgcac 169  Q
    ||||||||||  ||||| || ||||||||||||||||||||    
T  27685 acgtgtacactagatcttatagttgtgaagtgtttatgcac 27645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 58 - 169
Target Start/End: Original strand, 25148 - 25259
Alignment:
Q  58 ttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattacacgtgtacacctgatctgatggttgtgaa 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||| ||||||||||||   ||||||||||||||||    
T  25148 ttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctaagattatgacacgtgtacactaaatctgatggttgtgaa 25247  T
Q  158 gtgtttatgcac 169  Q
    ||||||||||||    
T  25248 gtgtttatgcac 25259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 169
Target Start/End: Complemental strand, 7104 - 7055
Alignment:
Q  120 gattattacacgtgtacacctgatctgatggttgtgaagtgtttatgcac 169  Q
    |||||||||| ||||||||  |||||||||||||||||||||||||||||    
T  7104 gattattacatgtgtacactagatctgatggttgtgaagtgtttatgcac 7055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 169
Target Start/End: Original strand, 10653 - 10702
Alignment:
Q  120 gattattacacgtgtacacctgatctgatggttgtgaagtgtttatgcac 169  Q
    ||||||||||  || ||||  |||||||||||||||||||||||||||||    
T  10653 gattattacatatgcacactagatctgatggttgtgaagtgtttatgcac 10702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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