View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9466_high_2 (Length: 473)

Name: NF9466_high_2
Description: NF9466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9466_high_2
NF9466_high_2
[»] chr7 (4 HSPs)
chr7 (18-464)||(5178993-5179439)
chr7 (361-414)||(22845041-22845094)
chr7 (361-409)||(42233252-42233300)
chr7 (361-410)||(21068983-21069032)
[»] chr8 (8 HSPs)
chr8 (57-464)||(5185301-5185710)
chr8 (78-464)||(6231811-6232201)
chr8 (57-464)||(1795305-1795705)
chr8 (60-248)||(5179352-5179537)
chr8 (85-205)||(5056638-5056757)
chr8 (57-135)||(29798225-29798299)
chr8 (361-410)||(21112654-21112703)
chr8 (314-359)||(5058903-5058948)
[»] chr2 (6 HSPs)
chr2 (361-412)||(27510633-27510684)
chr2 (361-410)||(27193733-27193782)
chr2 (361-410)||(27843547-27843596)
chr2 (361-408)||(3643125-3643172)
chr2 (361-409)||(35610915-35610963)
chr2 (369-410)||(24267988-24268029)
[»] chr5 (8 HSPs)
chr5 (361-414)||(3691231-3691284)
chr5 (361-414)||(3875503-3875556)
chr5 (361-414)||(17870566-17870619)
chr5 (361-410)||(10026238-10026287)
chr5 (361-410)||(25541703-25541752)
chr5 (369-410)||(24628878-24628919)
chr5 (369-410)||(30345561-30345602)
chr5 (361-409)||(14191720-14191768)
[»] scaffold0356 (2 HSPs)
scaffold0356 (361-412)||(15958-16009)
scaffold0356 (361-412)||(16877-16928)
[»] scaffold0003 (1 HSPs)
scaffold0003 (361-412)||(184068-184119)
[»] chr6 (3 HSPs)
chr6 (361-412)||(18857795-18857846)
chr6 (361-414)||(30882563-30882616)
chr6 (361-410)||(15334557-15334606)
[»] chr4 (2 HSPs)
chr4 (361-412)||(14146459-14146510)
chr4 (361-410)||(55558033-55558082)
[»] chr3 (5 HSPs)
chr3 (361-412)||(11369898-11369949)
chr3 (361-410)||(10001668-10001717)
chr3 (361-410)||(27275656-27275705)
chr3 (361-410)||(10111860-10111909)
chr3 (361-410)||(10245545-10245594)
[»] chr1 (4 HSPs)
chr1 (361-412)||(2330426-2330477)
chr1 (361-412)||(48774293-48774344)
chr1 (361-414)||(36208474-36208527)
chr1 (369-410)||(52501831-52501872)
[»] scaffold1139 (1 HSPs)
scaffold1139 (361-412)||(2274-2325)
[»] scaffold0262 (1 HSPs)
scaffold0262 (361-410)||(20264-20313)
[»] scaffold0225 (1 HSPs)
scaffold0225 (361-410)||(13204-13253)
[»] scaffold0118 (2 HSPs)
scaffold0118 (361-410)||(27629-27678)
scaffold0118 (361-410)||(24437-24486)
[»] scaffold0029 (1 HSPs)
scaffold0029 (361-410)||(141174-141222)
[»] scaffold0002 (1 HSPs)
scaffold0002 (361-410)||(318641-318689)
[»] scaffold0017 (1 HSPs)
scaffold0017 (361-409)||(187804-187852)


Alignment Details
Target: chr7 (Bit Score: 404; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 18 - 464
Target Start/End: Complemental strand, 5179439 - 5178993
Alignment:
Q  18 gtattgtccaccatacttttgtatgaaactattgtaccgtcggttaaagatacgaattttaaatcaatgaaggaagaaaataaagatatttcagtagaca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5179439 gtattgtccaccatacttttgtatgaaactattgtaccgtcggttaaagatacgaattttaaatcaatgaaggaagaaaataaagatatttcagtagaca 5179340  T
Q  118 gcttgaaaacattgcaaggtagtaattcccatagatacgaagatcatgcagcttttgtagaaaaaa-tcaacttaaagggatcattgcatggagaagttg 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5179339 gcttgaaaacattgcaaggtagtaattcccatagatacgaagatcatgcagcttttgtagaaaaaaatcaacttaaagggatcattgcatggagaagttg 5179240  T
Q  217 gaaatgagttatatccaaaaatgttatggtgaaatggaaatcagcaagaaggtccttgtttggaagatgcgaaatgtgaatcataataactagttatcaa 316  Q
    ||||||||||||||||||||||||| ||   ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5179239 gaaatgagttatatccaaaaatgttctgacaaaatggaaatcagca-gaaggtccttgtttggaagatgcgaaatgtgaatcataataagtagttatcaa 5179141  T
Q  317 tcattggaagataataaagaacgactaataagtaaagccaataataaagaacaaactaagagttactaactctacgatactattcagcattttccatagt 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5179140 tcattggaagataataaagaacgactaataagtaaagccaataataaagaacaaactaagagttactaactctacgatactattcagcattttccatagt 5179041  T
Q  417 gtatcaaaacaaatgcggcatcatgcatttaagaggtaacaccaaact 464  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  5179040 gtatcaaaacaaatgtggcatcatgcatttaagaggtaacatcaaact 5178993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 361 - 414
Target Start/End: Complemental strand, 22845094 - 22845041
Alignment:
Q  361 taaagaacaaactaagagttactaactctacgatactattcagcattttccata 414  Q
    ||||||||||||||||||||||||||||||||| || ||||| |||||||||||    
T  22845094 taaagaacaaactaagagttactaactctacgacaccattcaacattttccata 22845041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 361 - 409
Target Start/End: Complemental strand, 42233300 - 42233252
Alignment:
Q  361 taaagaacaaactaagagttactaactctacgatactattcagcatttt 409  Q
    ||||||| |||||||||||||||||||||||||||| ||||| ||||||    
T  42233300 taaagaaaaaactaagagttactaactctacgataccattcaacatttt 42233252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 361 - 410
Target Start/End: Original strand, 21068983 - 21069032
Alignment:
Q  361 taaagaacaaactaagagttactaactctacgatactattcagcattttc 410  Q
    ||||||| |||||||||||||||||||||||||||  ||||| |||||||    
T  21068983 taaagaaaaaactaagagttactaactctacgatatcattcaacattttc 21069032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 57 - 464
Target Start/End: Complemental strand, 5185710 - 5185301
Alignment:
Q  57 tcggttaaagatacgaattttaaatcaatgaaggaagaaaataaagatatttcagtagacagcttgaaaacattgcaaggtagtaattcccatagatacg 156  Q
    |||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||    
T  5185710 tcggttaaagatacaaattttaaatcaatgaaggaagaaactaaaaatatttcagtagacagcttgaaaacattgcaaggtagcaatgcccattgatacg 5185611  T
Q  157 aagatcatgcagcttttgtagaaaaaatcaacttaaagggatcattgcatggagaagttggaaatgagttatatccaaaaatgttatggtgaaatggaaa 256  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5185610 aagatcatgcagcttttgtagaaaaaatcaacttaaagggatcactgcattgagaagttggaaatgagttatatccaaaaatgttatggtaaaatggaaa 5185511  T
Q  257 tcagcaagaaggtccttgtttggaagatgcgaaatgtgaatcataataactagttatcaatcattggaagataataaagaacgactaataagtaaagcca 356  Q
    |||||||||||||||||| ||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  5185510 tcagcaagaaggtccttgcttggaagatgcaaaatgcgaatcacaataactagttatcaatcattggaagataataaagaactacaaataagtaaagcca 5185411  T
Q  357 ataataaagaacaaactaagagttactaactctacgatactattcagcattttccatagtg--tatcaaaacaaatgcggcatcatgcatttaagaggta 454  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||  |||||||||||||| | |||  |||||||||||||||    
T  5185410 ataataaagaacaaactaagagttactaactctacgataccgttcagcattttccatagtgtatatcaaaacaaatgtgtcattgtgcatttaagaggta 5185311  T
Q  455 acaccaaact 464  Q
    ||| ||||||    
T  5185310 acatcaaact 5185301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 78 - 464
Target Start/End: Complemental strand, 6232201 - 6231811
Alignment:
Q  78 aaatcaatgaaggaagaaaataaagatatttcagtagacagcttgaaaacattgcaaggtagtaattcccatagatacgaagatcatgcagcttttgtag 177  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||| ||||| ||||| |||||||||||||||||||||    
T  6232201 aaatcaatgaaggaagaaactaaaaatatttcagtagacagcttgaaaacattgcaaggtagcaatgcccattgatacaaagatcatgcagcttttgtag 6232102  T
Q  178 aaaaaatcaacttaaagggatcattgcatggagaagttggaaatgagttatatccaaaaatgttatggtgaaatggaaatcagcaagaaggtccttgttt 277  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  6232101 aaaaaatcaacttgaagggatcactgcatggagaagttggaaatgagttatatccaaaaatgttatggtgaaatggaaatcagc-agaaggtccttgctt 6232003  T
Q  278 ggaagatgcgaaatgtgaatcataataactagttatcaatcattggaagataataaagaacgactaataagtaaagccaataataaagaacaaac--taa 375  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||  |||    
T  6232002 ggaagatgcgaaatgcgaatcacaataactagttatcaatcattggaagataataaataactacaaataagtaaagccaataataaagaacaaactataa 6231903  T
Q  376 gagttactaactctacgatactattcagcattttccatagtg---tatcaaaacaaatgcggcatcatgcatttaagaggtaacaccaaact 464  Q
    ||| |||||||||||||||||   |||| |||||||||||||   ||||| |||||||| | ||||||||||||||||||||| | ||||||    
T  6231902 gagctactaactctacgataccgctcagaattttccatagtgttatatcataacaaatgtgtcatcatgcatttaagaggtaatatcaaact 6231811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 57 - 464
Target Start/End: Original strand, 1795305 - 1795705
Alignment:
Q  57 tcggttaaagatacgaattttaaatcaatgaaggaagaaaataaagatatttcagtagacagcttgaaaacattgcaaggtagtaattcccatagatacg 156  Q
    ||||| |||||||||||||| | ||||||||||| ||||||||    |  ||||  |||||||||||||||||| ||||| |||||| ||| |||| | |    
T  1795305 tcggtcaaagatacgaattt-acatcaatgaaggtagaaaatac---ttgttcaaaagacagcttgaaaacattacaaggcagtaatccccgtagacatg 1795400  T
Q  157 aagatcatgcagcttttgtagaaaaaatcaacttaaagggatcattgcatggagaagttggaaatgagttatatccaaaaatgttatggtgaaatggaaa 256  Q
    ||| |||||||| |||||||||||||||||||||||||||||||||||||   |  ||  || |||||||||||||||||||||||||||||||||||||    
T  1795401 aaggtcatgcagtttttgtagaaaaaatcaacttaaagggatcattgcatcatg--gt--gagatgagttatatccaaaaatgttatggtgaaatggaaa 1795496  T
Q  257 tcagcaagaaggtccttgtttggaagatgcgaaatgtgaatcataataactagttatcaatcattggaagataataaagaacgactaataagtaaagcca 356  Q
    |||||| ||||||||||| |||||||| |||||||| |||||| | |||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  1795497 tcagca-gaaggtccttgcttggaagaagcgaaatgcgaatcacattaactagttatcaatcattggaagataataaagaactacaaataagtaaagcca 1795595  T
Q  357 ataataaagaacaaactaagagttactaactctacgatactattcagcattttccatagtg--tatcaaaacaaatgcggcatcatgcatttaagaggta 454  Q
    |||||||||||||||||||||||||||| |||||||||||  |||| |||||||| |||||  |||||||| ||| | | ||||||||||||||||||||    
T  1795596 ataataaagaacaaactaagagttactatctctacgataccgttcatcattttccgtagtgtatatcaaaagaaaggtgtcatcatgcatttaagaggta 1795695  T
Q  455 acaccaaact 464  Q
    ||| ||||||    
T  1795696 acatcaaact 1795705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 60 - 248
Target Start/End: Complemental strand, 5179537 - 5179352
Alignment:
Q  60 gttaaagatacgaattttaaatcaatgaaggaagaaaataaagatatttcagtagacagcttgaaaacattgcaaggtagtaattcccatagatacgaag 159  Q
    |||||||||||| ||||||||| ||||||||||||||||||| ||||||||| |||||||||||||| ||||||||| |||||  | |  |||   |||     
T  5179537 gttaaagatacgtattttaaataaatgaaggaagaaaataaaaatatttcagaagacagcttgaaaatattgcaaggcagtaa--cactcagacttgaaa 5179440  T
Q  160 atcatgcagcttttgtagaaaaaatcaacttaaagggatcattgcatggagaagttggaaatgagttatatccaaaaatgttatggtga 248  Q
    ||| ||||||||||||||| ||||||||||| ||||||||||| ||  |||||| ||||||||||| || ||| |||||||||||||||    
T  5179439 atcttgcagcttttgtagacaaaatcaactt-aagggatcattacactgagaagctggaaatgagtgatgtccgaaaatgttatggtga 5179352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 85 - 205
Target Start/End: Original strand, 5056638 - 5056757
Alignment:
Q  85 tgaaggaagaaaataaagatatttcagtagacagcttgaaaacattgcaaggtagtaattcccatagatacgaagatcatgcagcttttgtagaaaaaat 184  Q
    ||||||||||||||| | ||||||||||||| |||||||||||||| |||||||| |||   |||||||| |||||||||| ||||||||  || |||||    
T  5056638 tgaaggaagaaaatagaaatatttcagtagatagcttgaaaacattacaaggtagcaatggtcatagatatgaagatcatgtagcttttgcggacaaaat 5056737  T
Q  185 caacttaaagggatcattgca 205  Q
    ||| || ||||||||| ||||    
T  5056738 caa-tttaagggatcactgca 5056757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 57 - 135
Target Start/End: Complemental strand, 29798299 - 29798225
Alignment:
Q  57 tcggttaaagatacgaattttaaatcaatgaaggaagaaaataaagatatttcagtagacagcttgaaaacattgcaag 135  Q
    |||||| ||||||| |||||||||||||||||| ||||||||||| |||||||||||||    ||||||||||||||||    
T  29798299 tcggttgaagatactaattttaaatcaatgaagcaagaaaataaaaatatttcagtaga----ttgaaaacattgcaag 29798225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 361 - 410
Target Start/End: Original strand, 21112654 - 21112703
Alignment:
Q  361 taaagaacaaactaagagttactaactctacgatactattcagcattttc 410  Q
    ||||||| |||||||||||||||||||||| ||||| ||||| |||||||    
T  21112654 taaagaaaaaactaagagttactaactctatgataccattcaacattttc 21112703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 359
Target Start/End: Original strand, 5058903 - 5058948
Alignment:
Q  314 caatcattggaagataataaagaacgactaataagtaaagccaata 359  Q
    ||||||||||||||||||||||||| || |||||||| ||| ||||    
T  5058903 caatcattggaagataataaagaactacaaataagtatagctaata 5058948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 361 - 412
Target Start/End: Complemental strand, 27510684 - 27510633
Alignment:
Q  361 taaagaacaaactaagagttactaactctacgatactattcagcattttcca 412  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  27510684 taaagaacaaactaagagttactaactctacgataccattcagcattttcca 27510633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 361 - 410
Target Start/End: Complemental strand, 27193782 - 27193733
Alignment:
Q  361 taaagaacaaactaagagttactaactctacgatactattcagcattttc 410  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27193782 taaagaacaaactaagagttactaactctacgataccattcagcattttc 27193733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 361 - 410
Target Start/End: Complemental strand, 27843596 - 27843547
Alignment:
Q  361 taaagaacaaactaagagttactaactctacgatactattcagcattttc 410  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27843596 taaagaacaaactaagagttactaactctacgataccattcagcattttc 27843547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 408
Target Start/End: Complemental strand, 3643172 - 3643125
Alignment:
Q  361 taaagaacaaactaagagttactaactctacgatactattcagcattt 408  Q
    ||||| ||||||||||||||||||||||||||| || |||||||||||    
T  3643172 taaaggacaaactaagagttactaactctacgacaccattcagcattt 3643125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 409
Target Start/End: Complemental strand, 35610963 - 35610915
Alignment:
Q  361 taaagaacaaactaagagttactaactctacgatactattcagcatttt 409  Q
    |||| |||||||||||||||||||||| |||||||  ||||||||||||    
T  35610963 taaaaaacaaactaagagttactaactgtacgatagcattcagcatttt 35610915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 410
Target Start/End: Original strand, 24267988 - 24268029
Alignment:
Q  369 aaactaagagttactaactctacgatactattcagcattttc 410  Q
    |||||||||||||||||||||| ||||| ||||| |||||||    
T  24267988 aaactaagagttactaactctatgataccattcaacattttc 24268029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 361 - 414
Target Start/End: Complemental strand, 3691284 - 3691231
Alignment:
Q  361 taaagaacaaactaagagttactaactctacgatactattcagcattttccata 414  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  3691284 taaagaacaaactaagagttactaactctacgataccattcaacattttccata 3691231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 361 - 414
Target Start/End: Original strand, 3875503 - 3875556
Alignment:
Q  361 taaagaacaaactaagagttactaactctacgatactattcagcattttccata 414  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  3875503 taaagaacaaactaagagttactaactctacgataccattcaacattttccata 3875556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 361 - 414
Target Start/End: Original strand, 17870566 - 17870619
Alignment:
Q  361 taaagaacaaactaagagttactaactctacgatactattcagcattttccata 414  Q
    ||||||||||||||||||||||||||||||||| || ||||| |||||||||||    
T  17870566 taaagaacaaactaagagttactaactctacgacaccattcaacattttccata 17870619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 361 - 410
Target Start/End: Complemental strand, 10026287 - 10026238
Alignment:
Q  361 taaagaacaaactaagagttactaactctacgatactattcagcattttc 410  Q
    ||||||| |||||||||||||||||||||||||||| ||||| |||||||    
T  10026287 taaagaaaaaactaagagttactaactctacgataccattcaacattttc 10026238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 361 - 410
Target Start/End: Original strand, 25541703 - 25541752
Alignment:
Q  361 taaagaacaaactaagagttactaactctacgatactattcagcattttc 410  Q
    ||||||| |||||||||||||||||||||||||||| ||||| |||||||    
T  25541703 taaagaaaaaactaagagttactaactctacgataccattcaacattttc 25541752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 410
Target Start/End: Original strand, 24628878 - 24628919
Alignment:
Q  369 aaactaagagttactaactctacgatactattcagcattttc 410  Q
    |||| ||||||||||||||||||||||| ||||| |||||||    
T  24628878 aaaccaagagttactaactctacgataccattcaacattttc 24628919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 410
Target Start/End: Original strand, 30345561 - 30345602
Alignment:
Q  369 aaactaagagttactaactctacgatactattcagcattttc 410  Q
    |||||||||||||||||||| ||||||| ||||| |||||||    
T  30345561 aaactaagagttactaactcaacgataccattcaacattttc 30345602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 409
Target Start/End: Original strand, 14191720 - 14191768
Alignment:
Q  361 taaagaacaaactaagagttactaactctacgatactattcagcatttt 409  Q
    ||||||||||||||||||| ||||||| |||||||  ||||| ||||||    
T  14191720 taaagaacaaactaagagtcactaactgtacgatagcattcaacatttt 14191768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 361 - 412
Target Start/End: Original strand, 15958 - 16009
Alignment:
Q  361 taaagaacaaactaagagttactaactctacgatactattcagcattttcca 412  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  15958 taaagaacaaactaagagttactaactctacgataccattaagcattttcca 16009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 361 - 412
Target Start/End: Original strand, 16877 - 16928
Alignment:
Q  361 taaagaacaaactaagagttactaactctacgatactattcagcattttcca 412  Q
    ||||| ||||||||||||||||||||||||||| || |||||||||||||||    
T  16877 taaaggacaaactaagagttactaactctacgacaccattcagcattttcca 16928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 361 - 412
Target Start/End: Complemental strand, 184119 - 184068
Alignment:
Q  361 taaagaacaaactaagagttactaactctacgatactattcagcattttcca 412  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  184119 taaagaacaaactaagagttactaactctacgataccattcaacattttcca 184068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 361 - 412
Target Start/End: Complemental strand, 18857846 - 18857795
Alignment:
Q  361 taaagaacaaactaagagttactaactctacgatactattcagcattttcca 412  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  18857846 taaagaacaaactaagagttactaactctacgataccattcaacattttcca 18857795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 361 - 414
Target Start/End: Complemental strand, 30882616 - 30882563
Alignment:
Q  361 taaagaacaaactaagagttactaactctacgatactattcagcattttccata 414  Q
    ||||||||||||||||||||||||||||||||| || ||||| |||||||||||    
T  30882616 taaagaacaaactaagagttactaactctacgacaccattcaacattttccata 30882563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 410
Target Start/End: Complemental strand, 15334606 - 15334557
Alignment:
Q  361 taaagaacaaactaagagttactaactctacgatactattcagcattttc 410  Q
    ||||||| |||||||| ||||||||||||| ||||| ||||| |||||||    
T  15334606 taaagaaaaaactaagggttactaactctatgataccattcaacattttc 15334557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 361 - 412
Target Start/End: Original strand, 14146459 - 14146510
Alignment:
Q  361 taaagaacaaactaagagttactaactctacgatactattcagcattttcca 412  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  14146459 taaagaacaaactaagagttactaactctccgataccattcagcattttcca 14146510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 361 - 410
Target Start/End: Original strand, 55558033 - 55558082
Alignment:
Q  361 taaagaacaaactaagagttactaactctacgatactattcagcattttc 410  Q
    ||||||| |||||||||||||||||||||||||||| ||||| |||||||    
T  55558033 taaagaaaaaactaagagttactaactctacgataccattcaacattttc 55558082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 361 - 412
Target Start/End: Complemental strand, 11369949 - 11369898
Alignment:
Q  361 taaagaacaaactaagagttactaactctacgatactattcagcattttcca 412  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  11369949 taaagaacaaactaagagttactaactccacgataccattcagcattttcca 11369898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 361 - 410
Target Start/End: Complemental strand, 10001717 - 10001668
Alignment:
Q  361 taaagaacaaactaagagttactaactctacgatactattcagcattttc 410  Q
    ||||||| |||||||||||||||||||||||||||| ||||| |||||||    
T  10001717 taaagaaaaaactaagagttactaactctacgataccattcaacattttc 10001668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 361 - 410
Target Start/End: Complemental strand, 27275705 - 27275656
Alignment:
Q  361 taaagaacaaactaagagttactaactctacgatactattcagcattttc 410  Q
    ||||||| |||||||||||||||||||||||||||| ||||| |||||||    
T  27275705 taaagaaaaaactaagagttactaactctacgataccattcaacattttc 27275656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 361 - 410
Target Start/End: Complemental strand, 10111909 - 10111860
Alignment:
Q  361 taaagaacaaactaagagttactaactctacgatactattcagcattttc 410  Q
    ||||||| ||||||||||||| |||||||||||||| ||||| |||||||    
T  10111909 taaagaaaaaactaagagttaataactctacgataccattcaacattttc 10111860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 361 - 410
Target Start/End: Complemental strand, 10245594 - 10245545
Alignment:
Q  361 taaagaacaaactaagagttactaactctacgatactattcagcattttc 410  Q
    ||||||| ||||||||||||||||| |||||||||| ||||| |||||||    
T  10245594 taaagaaaaaactaagagttactaaatctacgataccattcaacattttc 10245545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 361 - 412
Target Start/End: Complemental strand, 2330477 - 2330426
Alignment:
Q  361 taaagaacaaactaagagttactaactctacgatactattcagcattttcca 412  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  2330477 taaagaacaaactaagagttactaactctacgataccattcaacattttcca 2330426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 361 - 412
Target Start/End: Original strand, 48774293 - 48774344
Alignment:
Q  361 taaagaacaaactaagagttactaactctacgatactattcagcattttcca 412  Q
    |||||||||||||||||||||||||||||||||||| ||| | |||||||||    
T  48774293 taaagaacaaactaagagttactaactctacgataccattaaacattttcca 48774344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 361 - 414
Target Start/End: Complemental strand, 36208527 - 36208474
Alignment:
Q  361 taaagaacaaactaagagttactaactctacgatactattcagcattttccata 414  Q
    |||||||||||||||||||||||||||||| |||||  ||||| ||||| ||||    
T  36208527 taaagaacaaactaagagttactaactctatgataccgttcagaatttttcata 36208474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 410
Target Start/End: Complemental strand, 52501872 - 52501831
Alignment:
Q  369 aaactaagagttactaactctacgatactattcagcattttc 410  Q
    |||| ||||||||||||||||||||||| ||||| |||||||    
T  52501872 aaaccaagagttactaactctacgataccattcaacattttc 52501831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1139 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold1139
Description:

Target: scaffold1139; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 361 - 412
Target Start/End: Complemental strand, 2325 - 2274
Alignment:
Q  361 taaagaacaaactaagagttactaactctacgatactattcagcattttcca 412  Q
    |||||||||||||||||||||||||||||||||||  ||||| |||||||||    
T  2325 taaagaacaaactaagagttactaactctacgatatcattcaacattttcca 2274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 361 - 410
Target Start/End: Complemental strand, 20313 - 20264
Alignment:
Q  361 taaagaacaaactaagagttactaactctacgatactattcagcattttc 410  Q
    ||||||| |||||||||||||||||||||||||||| ||||| |||||||    
T  20313 taaagaaaaaactaagagttactaactctacgataccattcaacattttc 20264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 361 - 410
Target Start/End: Original strand, 13204 - 13253
Alignment:
Q  361 taaagaacaaactaagagttactaactctacgatactattcagcattttc 410  Q
    ||||||| |||||||||||||||||||||||||||| ||||| |||||||    
T  13204 taaagaaaaaactaagagttactaactctacgataccattcaacattttc 13253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 361 - 410
Target Start/End: Original strand, 27629 - 27678
Alignment:
Q  361 taaagaacaaactaagagttactaactctacgatactattcagcattttc 410  Q
    ||||||| |||||||||||||||||||||||||||| ||||| |||||||    
T  27629 taaagaaaaaactaagagttactaactctacgataccattcaacattttc 27678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 361 - 410
Target Start/End: Original strand, 24437 - 24486
Alignment:
Q  361 taaagaacaaactaagagttactaactctacgatactattcagcattttc 410  Q
    ||||||| ||||||||||||||||||||||| |||| ||||| |||||||    
T  24437 taaagaaaaaactaagagttactaactctacaataccattcaacattttc 24486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 361 - 410
Target Start/End: Original strand, 141174 - 141222
Alignment:
Q  361 taaagaacaaactaagagttactaactctacgatactattcagcattttc 410  Q
    |||||||||| ||||||||||||||||||||||||| ||||| |||||||    
T  141174 taaagaacaa-ctaagagttactaactctacgataccattcaacattttc 141222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 361 - 410
Target Start/End: Original strand, 318641 - 318689
Alignment:
Q  361 taaagaacaaactaagagttactaactctacgatactattcagcattttc 410  Q
    |||||||||| ||||||||||||||||||||||||| ||||| |||||||    
T  318641 taaagaacaa-ctaagagttactaactctacgataccattcaacattttc 318689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 409
Target Start/End: Complemental strand, 187852 - 187804
Alignment:
Q  361 taaagaacaaactaagagttactaactctacgatactattcagcatttt 409  Q
    ||||||| |||||||||||| ||||||||||||||| ||||| ||||||    
T  187852 taaagaaaaaactaagagttgctaactctacgataccattcaacatttt 187804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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