View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9466_high_9 (Length: 255)
Name: NF9466_high_9
Description: NF9466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9466_high_9 |
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| [»] scaffold0050 (1 HSPs) |
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Alignment Details
Target: scaffold0050 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 2954 - 3195
Alignment:
| Q |
13 |
gaaacataggtcgaatgagaagaatccgagacttttataaagaaaccgtggttaggccataattcagaaccggataatgcaggaacgatgcttatcactt |
112 |
Q |
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| T |
2954 |
gaaacataggttgaatgagaagaatccgagacttttataaagaaaccgtggttaggccataattcagaaccggataatgcaggaacgatgcttatcactt |
3053 |
T |
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| Q |
113 |
gcagaagaactgaacggtgttcaccgcgaactttcacattagagttcattgtttggagaagcttcagtagaactccaggtatgagagatgccatcttctt |
212 |
Q |
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| T |
3054 |
gaagaagaactgaacggtgttcaccgcgaactttcacattagagttcattgtttggagaagcttcagtagaactccaggtatgagagatgccatcttctt |
3153 |
T |
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| Q |
213 |
ggcgttttgtttaattatatttaaacttttacctgttagatg |
254 |
Q |
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| T |
3154 |
cgcgttttgtttaattatatttaaacttttacctgttagatg |
3195 |
T |
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