View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9466_low_1 (Length: 591)
Name: NF9466_low_1
Description: NF9466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9466_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 5 - 514
Target Start/End: Original strand, 40743675 - 40744186
Alignment:
| Q |
5 |
tgggtagattattcttaaatatttccttatttttctttcaatacttgcatttataaaaatcactttttaaaaagaaagaaatagattnnnnnnnnnnnnn |
104 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40743675 |
tgggtaaattactcttaaatatttccttatttttctttcaatacttgcatttataaaaatcactttttaaaaagaaagaaatagataaaaaaaaaaaaaa |
40743774 |
T |
|
| Q |
105 |
--tcttcaggagaagctactcaaaacaacttcttatttgatagtacaatttttaaatgnnnnnnnctttcagattcttatnnnnnnnnnnnnnnntttat |
202 |
Q |
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| T |
40743775 |
aatcttcaagagaagctactcaaaacaacttcttatttgatagtacaatttttaaatttttttttctttcagattcttataaaaaaaataaaaaatttat |
40743874 |
T |
|
| Q |
203 |
aacaaatagatgaaaactcctaaaaaggacatattcatggttggacaattcatttcactcattcaaactaagacatcaaatgaattgacttgatgattca |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40743875 |
aacaaatagatgaaaactcctaaaaaggacatattcatggttggacaattcatttcactcattcaaactaagacatcaaatgaattgacttgatgattca |
40743974 |
T |
|
| Q |
303 |
tacatatttccttaacctttctcctaatgtattatttgaagaatataatgattttcaatttccatatcctataaaatatgggaatattggacaggtttct |
402 |
Q |
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| T |
40743975 |
tacatatttccttaacctttctcctaatgtattatttgaagaatataatgattttcaatttccatatcctataaaatatgggaatattggacaggtttct |
40744074 |
T |
|
| Q |
403 |
cgctattctttggattgatgattgataggcaacactactatattaaagagatcacttcattgaggaagaatgtggaaaaatcaaagaaacaaatccacaa |
502 |
Q |
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| T |
40744075 |
cgctattctttggattgatgattgataggcaacactactatattaaagagatcacttcattgaggaagaatgtggaaaaatcaaagaaacaaatccacaa |
40744174 |
T |
|
| Q |
503 |
tcacgaacctcc |
514 |
Q |
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|||||||||||| |
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| T |
40744175 |
tcacgaacctcc |
40744186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 40756191 - 40756276
Alignment:
| Q |
5 |
tgggtagattattcttaaatatttccttatttttctttcaatacttgcatttataaaaatcactttttaaaaagaaagaaatagat |
90 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40756191 |
tgggtaaattactcttaaatatttccttatttttctttcaatacttgcatttataaaaatcactttttaaaaagaaagaaatagat |
40756276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 144
Target Start/End: Original strand, 40756294 - 40756333
Alignment:
| Q |
105 |
tcttcaggagaagctactcaaaacaacttcttatttgata |
144 |
Q |
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|||||| |||||||||||||| |||||||||||||||||| |
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| T |
40756294 |
tcttcaagagaagctactcaacacaacttcttatttgata |
40756333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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