View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9466_low_10 (Length: 351)
Name: NF9466_low_10
Description: NF9466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9466_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 17 - 321
Target Start/End: Original strand, 33805477 - 33805781
Alignment:
| Q |
17 |
aatatttcctttatatgacgaagtgttcgaggtttgatgaaagaggctttaccattgtttcgtttattatnnnnnnngttgcagagaaaggggaagggtg |
116 |
Q |
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| T |
33805477 |
aatatttcctttatatgacgaagtgttcgaggtttgatgaaagaggctttaccattgtttcgtttattataaaaaaagttgcagagaaaggggaagggtg |
33805576 |
T |
|
| Q |
117 |
gcagaggcagaaccattgtaagactgtgttaatttgtttagcgtcatgaataataaattattgcacggtttcttgaccaaccctttggattgttccctcn |
216 |
Q |
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| T |
33805577 |
gcagaggcagaaccattgtaagactgtgttaatttgtttagcgtcatgaataataaattattgcacggtttcttgaccaaccctttggattgttccctct |
33805676 |
T |
|
| Q |
217 |
nnnnnnattgctttctaacatcatatttcattcatcctttcctgcgtccctcctttccatgcatatcatcacatgcacttgcttctcctaataatttcat |
316 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33805677 |
ttttttattgctttctaacatcatatttcattcatcctttactgcgtcccacctttccatgcatatcatcacatgcacttgcttctcctaataatttcat |
33805776 |
T |
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| Q |
317 |
ttttt |
321 |
Q |
| |
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||||| |
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| T |
33805777 |
ttttt |
33805781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 9392519 - 9392478
Alignment:
| Q |
158 |
cgtcatgaataataaattattgcacggtttcttgaccaaccc |
199 |
Q |
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| T |
9392519 |
cgtcattactaataaattattgcatggtttcttgaccaaccc |
9392478 |
T |
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