View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9466_low_11 (Length: 346)

Name: NF9466_low_11
Description: NF9466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9466_low_11
NF9466_low_11
[»] chr4 (8 HSPs)
chr4 (42-322)||(30942435-30942711)
chr4 (54-121)||(31089934-31090001)
chr4 (74-115)||(17657975-17658016)
chr4 (58-125)||(49229187-49229254)
chr4 (77-128)||(50982833-50982884)
chr4 (76-118)||(16912467-16912509)
chr4 (82-115)||(9600005-9600038)
chr4 (82-115)||(22020147-22020180)
[»] chr3 (4 HSPs)
chr3 (55-125)||(39964316-39964386)
chr3 (63-126)||(39682629-39682692)
chr3 (78-114)||(10344681-10344717)
chr3 (74-115)||(34308023-34308064)
[»] chr1 (5 HSPs)
chr1 (82-125)||(5246217-5246260)
chr1 (54-126)||(748669-748741)
chr1 (58-115)||(4602696-4602753)
chr1 (85-118)||(29204491-29204524)
chr1 (76-116)||(13685683-13685723)
[»] chr7 (3 HSPs)
chr7 (54-125)||(3967753-3967824)
chr7 (72-117)||(47712545-47712590)
chr7 (88-116)||(36882295-36882323)
[»] chr2 (4 HSPs)
chr2 (76-114)||(44274574-44274612)
chr2 (72-125)||(2577696-2577749)
chr2 (270-303)||(6896037-6896070)
chr2 (82-115)||(43341205-43341238)
[»] scaffold0148 (1 HSPs)
scaffold0148 (74-115)||(21189-21230)
[»] chr8 (1 HSPs)
chr8 (85-126)||(16489158-16489199)
[»] chr5 (2 HSPs)
chr5 (82-115)||(14631034-14631067)
chr5 (274-303)||(22432486-22432515)
[»] chr6 (2 HSPs)
chr6 (77-125)||(14173411-14173459)
chr6 (77-125)||(14177947-14177995)


Alignment Details
Target: chr4 (Bit Score: 166; Significance: 8e-89; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 42 - 322
Target Start/End: Original strand, 30942435 - 30942711
Alignment:
Q  42 agatttactaagtgagtgatatatgtgacaattaatatatactacatatatcatttattcaatgaatctaaaaattagttttttatcaacaattagtttg 141  Q
    ||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||    
T  30942435 agatttactaagtgagtgatatatgtgaccattaatatatacctcatatatcatttattcaatgaatctaaaaattagttttttatcaaaaattagcttg 30942534  T
Q  142 cttaattactttggaagatatataactcgttatggtaagcatcaagttctgctgnnnnnnnnngttgctaataccatagaagtatgttttcagttaatat 241  Q
    |||||||||||||||||    |||||||||||||| ||||||||||||||||||         ||||||||||| ||||||||||||||||| |||||||    
T  30942535 cttaattactttggaag----ataactcgttatggcaagcatcaagttctgctgtttttttttgttgctaatacaatagaagtatgttttcaattaatat 30942630  T
Q  242 tatgtgtcttgaaatattaa-tgataaatcatagggtgcgtttggtttgtaaaacagtaagtatcagataaaatagtacaat 322  Q
    |||||||||||||||||||| ||||||| |||| ||||| ||||||||||||||||||||||||  || |||| ||||||||    
T  30942631 tatgtgtcttgaaatattaattgataaaccata-ggtgcttttggtttgtaaaacagtaagtattggacaaaacagtacaat 30942711  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 54 - 121
Target Start/End: Original strand, 31089934 - 31090001
Alignment:
Q  54 tgagtgatatatgtgacaattaatatatactacatatatcatttattcaatgaatctaaaaattagtt 121  Q
    |||||||| |||||||| ||||||||| || ||||| ||||||||||||||||||||||||| |||||    
T  31089934 tgagtgatgtatgtgaccattaatatagaccacatacatcatttattcaatgaatctaaaaagtagtt 31090001  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 17657975 - 17658016
Alignment:
Q  74 taatatatactacatatatcatttattcaatgaatctaaaaa 115  Q
    ||||||| ||||||||||||||||||| ||||||||||||||    
T  17657975 taatatagactacatatatcatttattgaatgaatctaaaaa 17658016  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 49229254 - 49229187
Alignment:
Q  58 tgatatatgtgacaattaatatatactacatatatcatttattcaatgaatctaaaaattagtttttt 125  Q
    |||||||||| |  |||||||||||| || || |||||||||||||||||| |||||| || ||||||    
T  49229254 tgatatatgtaaacattaatatataccacgtacatcatttattcaatgaatttaaaaaatattttttt 49229187  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 128
Target Start/End: Complemental strand, 50982884 - 50982833
Alignment:
Q  77 tatatactacatatatcatttattcaatgaatctaaaaattagttttttatc 128  Q
    |||||| |||||| |||| |||||||||||||||||||| ||| ||||||||    
T  50982884 tatatattacatacatcacttattcaatgaatctaaaaaatagatttttatc 50982833  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 118
Target Start/End: Complemental strand, 16912509 - 16912467
Alignment:
Q  76 atatatactacatatatcatttattcaatgaatctaaaaatta 118  Q
    ||||| |||||||| |||||||||| |||||||||||||||||    
T  16912509 atatagactacatacatcatttattgaatgaatctaaaaatta 16912467  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 115
Target Start/End: Complemental strand, 9600038 - 9600005
Alignment:
Q  82 actacatatatcatttattcaatgaatctaaaaa 115  Q
    |||||||| |||||||||||||||||||||||||    
T  9600038 actacatacatcatttattcaatgaatctaaaaa 9600005  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 115
Target Start/End: Complemental strand, 22020180 - 22020147
Alignment:
Q  82 actacatatatcatttattcaatgaatctaaaaa 115  Q
    ||||||||||||||||||| ||||||||||||||    
T  22020180 actacatatatcatttattgaatgaatctaaaaa 22020147  T

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Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 55 - 125
Target Start/End: Complemental strand, 39964386 - 39964316
Alignment:
Q  55 gagtgatatatgtgacaattaatatatactacatatatcatttattcaatgaatctaaaaattagtttttt 125  Q
    ||||||| |||||||| ||||||||| |||||||| || |||||||||||||||||||||| |||||||||    
T  39964386 gagtgatgtatgtgaccattaatatagactacatacataatttattcaatgaatctaaaaagtagtttttt 39964316  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 126
Target Start/End: Complemental strand, 39682692 - 39682629
Alignment:
Q  63 tatgtgacaattaatatatactacatatatcatttattcaatgaatctaaaaattagtttttta 126  Q
    |||||||| ||||||||| || ||||| ||||||||||||||||| ||||||| || |||||||    
T  39682692 tatgtgaccattaatatagaccacatacatcatttattcaatgaacctaaaaaataatttttta 39682629  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 114
Target Start/End: Complemental strand, 10344717 - 10344681
Alignment:
Q  78 atatactacatatatcatttattcaatgaatctaaaa 114  Q
    |||||| ||||||||||||||||||||||||||||||    
T  10344717 atataccacatatatcatttattcaatgaatctaaaa 10344681  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 34308064 - 34308023
Alignment:
Q  74 taatatatactacatatatcatttattcaatgaatctaaaaa 115  Q
    ||||||| |||| ||||||||||||||||||||| |||||||    
T  34308064 taatataaactaaatatatcatttattcaatgaacctaaaaa 34308023  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 125
Target Start/End: Original strand, 5246217 - 5246260
Alignment:
Q  82 actacatatatcatttattcaatgaatctaaaaattagtttttt 125  Q
    |||||||| ||||||||||||||||||||||||| |||||||||    
T  5246217 actacatacatcatttattcaatgaatctaaaaaatagtttttt 5246260  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 126
Target Start/End: Complemental strand, 748741 - 748669
Alignment:
Q  54 tgagtgatatatgtgacaattaatatatactacatatatcatttattcaatgaatctaaaaattagtttttta 126  Q
    |||||||| ||||| || ||||||||| ||   ||| ||||||||||||||||| ||||||| ||||||||||    
T  748741 tgagtgatgtatgtaaccattaatatagaccgtatacatcatttattcaatgaacctaaaaaatagtttttta 748669  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 4602696 - 4602753
Alignment:
Q  58 tgatatatgtgacaattaatatatactacatatatcatttattcaatgaatctaaaaa 115  Q
    ||||||||||||||  ||||| |||| |||||||||||| ||| |||| |||||||||    
T  4602696 tgatatatgtgacatataataaataccacatatatcattaattgaatgtatctaaaaa 4602753  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 118
Target Start/End: Original strand, 29204491 - 29204524
Alignment:
Q  85 acatatatcatttattcaatgaatctaaaaatta 118  Q
    |||||||||||||||||||| |||||||||||||    
T  29204491 acatatatcatttattcaataaatctaaaaatta 29204524  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 13685683 - 13685723
Alignment:
Q  76 atatatactacatatatcatttattcaatgaatctaaaaat 116  Q
    ||||| |||| ||||||||||||||||||||| ||||||||    
T  13685683 atataaactaaatatatcatttattcaatgaacctaaaaat 13685723  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 125
Target Start/End: Original strand, 3967753 - 3967824
Alignment:
Q  54 tgagtgatatatgtgacaattaatatatactacatatatcatttattcaatgaatctaaaaattagtttttt 125  Q
    |||||||| ||  |||| |||||||||  | ||||| ||||||||||||||||| ||||||| |||||||||    
T  3967753 tgagtgatgtaattgaccattaatatagtccacatacatcatttattcaatgaacctaaaaagtagtttttt 3967824  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 47712545 - 47712590
Alignment:
Q  72 attaatatatactacatatatcatttattcaatgaatctaaaaatt 117  Q
    ||||||||| || ||||| |||||||||| ||||||||||||||||    
T  47712545 attaatataaaccacatacatcatttattaaatgaatctaaaaatt 47712590  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 116
Target Start/End: Complemental strand, 36882323 - 36882295
Alignment:
Q  88 tatatcatttattcaatgaatctaaaaat 116  Q
    |||||||||||||||||||||||||||||    
T  36882323 tatatcatttattcaatgaatctaaaaat 36882295  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 114
Target Start/End: Complemental strand, 44274612 - 44274574
Alignment:
Q  76 atatatactacatatatcatttattcaatgaatctaaaa 114  Q
    ||||| ||||||||||||||||||| |||||||||||||    
T  44274612 atatagactacatatatcatttattgaatgaatctaaaa 44274574  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 2577749 - 2577696
Alignment:
Q  72 attaatatatactacatatatcatttattcaatgaatctaaaaattagtttttt 125  Q
    |||||||||||| ||||| ||||||  ||||||||| ||||||| |||||||||    
T  2577749 attaatatataccacatacatcattcgttcaatgaacctaaaaaatagtttttt 2577696  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 303
Target Start/End: Original strand, 6896037 - 6896070
Alignment:
Q  270 catagggtgcgtttggtttgtaaaacagtaagta 303  Q
    |||||||||||||||||||| |||||||||||||    
T  6896037 catagggtgcgtttggtttgcaaaacagtaagta 6896070  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 115
Target Start/End: Original strand, 43341205 - 43341238
Alignment:
Q  82 actacatatatcatttattcaatgaatctaaaaa 115  Q
    ||||||||||||||||||| ||||||||||||||    
T  43341205 actacatatatcatttattaaatgaatctaaaaa 43341238  T

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Target: scaffold0148 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 21189 - 21230
Alignment:
Q  74 taatatatactacatatatcatttattcaatgaatctaaaaa 115  Q
    ||||||| || |||||||||||||||| ||||||||||||||    
T  21189 taatatagaccacatatatcatttattaaatgaatctaaaaa 21230  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 16489199 - 16489158
Alignment:
Q  85 acatatatcatttattcaatgaatctaaaaattagtttttta 126  Q
    |||||||| ||| ||||||||||||||||||||| |||||||    
T  16489199 acatatattattaattcaatgaatctaaaaattaatttttta 16489158  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 115
Target Start/End: Complemental strand, 14631067 - 14631034
Alignment:
Q  82 actacatatatcatttattcaatgaatctaaaaa 115  Q
    ||||||||||| ||||||||||||||||||||||    
T  14631067 actacatatattatttattcaatgaatctaaaaa 14631034  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 303
Target Start/End: Complemental strand, 22432515 - 22432486
Alignment:
Q  274 gggtgcgtttggtttgtaaaacagtaagta 303  Q
    ||||||||||||||||||||||||||||||    
T  22432515 gggtgcgtttggtttgtaaaacagtaagta 22432486  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 14173459 - 14173411
Alignment:
Q  77 tatatactacatatatcatttattcaatgaatctaaaaattagtttttt 125  Q
    |||| ||||||||  ||||||||| |||||||||||||||||| |||||    
T  14173459 tatagactacatacttcatttattgaatgaatctaaaaattagattttt 14173411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 14177995 - 14177947
Alignment:
Q  77 tatatactacatatatcatttattcaatgaatctaaaaattagtttttt 125  Q
    |||| ||||||||  ||||||||| |||||||||||||||||| |||||    
T  14177995 tatagactacatacttcatttattgaatgaatctaaaaattagattttt 14177947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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