View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9466_low_13 (Length: 308)
Name: NF9466_low_13
Description: NF9466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9466_low_13 |
 | |
|
| [»] scaffold0400 (2 HSPs) |
| | |
|
| [»] scaffold0365 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 15040547 - 15040827
Alignment:
| Q |
18 |
acaaattgcctcattgaaggaggttgctatcttggagctggcaacaaataatttaagtggcttcgtcccaaaacaacttggaagattatctatgttatta |
117 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15040547 |
acaaattgcctcattgaaggaagttgctatcttggagctggcaacaaataatttaagtggcttcgtcccaaaacaacttggaagattatctatgttatta |
15040646 |
T |
|
| Q |
118 |
cacttaaatatgagccaaaataagtttgaaggaaacattcctgatgagattggacagttaaaagttattgagaatcttaatcttagtgggaattctttga |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
15040647 |
cacttaaatatgagccaaaataagtttgaaggaaacattcctgatgagattggacagttaaaagttattgaaaatcttgatcttagtgggaattctttga |
15040746 |
T |
|
| Q |
218 |
atggaaccataccaacaatgcttggacagttaaatcgcttagaaacattgaatctttcttgtaccattcccttgacctatg |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
15040747 |
atggaaccataccaacaatgcttggacagttaaatcgcttagaaacattgaatcttttttgtaccattcccttgacctatg |
15040827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 49 - 272
Target Start/End: Complemental strand, 14522917 - 14522694
Alignment:
| Q |
49 |
ttggagctggcaacaaataatttaagtggcttcgtcccaaaacaacttggaagattatctatgttattacacttaaatatgagccaaaataagtttgaag |
148 |
Q |
| |
|
||||| || |||||||||||||||||||| || |||| || |||||||||| || |||| |||||| || || ||| ||||||||||||||||||||| |
|
|
| T |
14522917 |
ttggatcttgcaacaaataatttaagtggttttatccctgaaaaacttggaaggttgtctaggttattgcagttgaatttgagccaaaataagtttgaag |
14522818 |
T |
|
| Q |
149 |
gaaacattcctgatgagattggacagttaaaagttattgagaatcttaatcttagtgggaattctttgaatggaaccataccaacaatgcttggacagtt |
248 |
Q |
| |
|
|||||||||||| ||| |||| || || || |||||||| ||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
14522817 |
gaaacattcctgttgaacttggtcaattgaatgttattgaagatcttgatcttagcgggaattttttgaatggaaccataccaacaatgcttggacagtt |
14522718 |
T |
|
| Q |
249 |
aaatcgcttagaaacattgaatct |
272 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
14522717 |
aaatcgcttagaaacattgaatct |
14522694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 49 - 272
Target Start/End: Original strand, 15010819 - 15011042
Alignment:
| Q |
49 |
ttggagctggcaacaaataatttaagtggcttcgtcccaaaacaacttggaagattatctatgttattacacttaaatatgagccaaaataagtttgaag |
148 |
Q |
| |
|
|||||||| |||| ||||||||| ||||||||| |||| ||| ||||||| | || ||||||||||| || |||||| ||||||||||||||||||| | |
|
|
| T |
15010819 |
ttggagcttgcaataaataatttgagtggcttcatccctaaaaaacttggtatgttgtctatgttattgcagttaaatttgagccaaaataagtttgagg |
15010918 |
T |
|
| Q |
149 |
gaaacattcctgatgagattggacagttaaaagttattgagaatcttaatcttagtgggaattctttgaatggaaccataccaacaatgcttggacagtt |
248 |
Q |
| |
|
| |||||||||| |||| |||| || || || |||||||| |||||| ||||||||||||||||| ||||||||||||||||| |||||||||| ||||| |
|
|
| T |
15010919 |
ggaacattcctgttgagtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagtt |
15011018 |
T |
|
| Q |
249 |
aaatcgcttagaaacattgaatct |
272 |
Q |
| |
|
||||| |||||||||||||||||| |
|
|
| T |
15011019 |
aaatcacttagaaacattgaatct |
15011042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 49 - 272
Target Start/End: Original strand, 15024936 - 15025159
Alignment:
| Q |
49 |
ttggagctggcaacaaataatttaagtggcttcgtcccaaaacaacttggaagattatctatgttattacacttaaatatgagccaaaataagtttgaag |
148 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||| |||| ||| |||||| || ||||||| |||||| || |||||| ||||||||||||||||||| | |
|
|
| T |
15024936 |
ttggagcttgcaacaaataatttgagtggcttcatccctaaaagacttggtaggttatctaggttattgcagttaaatttgagccaaaataagtttgagg |
15025035 |
T |
|
| Q |
149 |
gaaacattcctgatgagattggacagttaaaagttattgagaatcttaatcttagtgggaattctttgaatggaaccataccaacaatgcttggacagtt |
248 |
Q |
| |
|
| |||||||||| |||| ||| || || || |||||||| |||||| ||||||||||||||| | ||||||||||||||||| |||||||||| ||||| |
|
|
| T |
15025036 |
ggaacattcctgctgagtttgcccaattgaatgttattgaaaatcttgatcttagtgggaattttatgaatggaaccataccatcaatgcttgggcagtt |
15025135 |
T |
|
| Q |
249 |
aaatcgcttagaaacattgaatct |
272 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
15025136 |
aaatcgcttagaaacattgaatct |
15025159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 49 - 272
Target Start/End: Original strand, 15032277 - 15032500
Alignment:
| Q |
49 |
ttggagctggcaacaaataatttaagtggcttcgtcccaaaacaacttggaagattatctatgttattacacttaaatatgagccaaaataagtttgaag |
148 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||| |||| ||| |||||| || ||||||| |||||| || |||||| ||||||||||||||||||| | |
|
|
| T |
15032277 |
ttggagcttgcaacaaataatttgagtggcttcatccctaaaagacttggtaggttatctaggttattgcagttaaatttgagccaaaataagtttgagg |
15032376 |
T |
|
| Q |
149 |
gaaacattcctgatgagattggacagttaaaagttattgagaatcttaatcttagtgggaattctttgaatggaaccataccaacaatgcttggacagtt |
248 |
Q |
| |
|
| |||||||||| |||| ||| || || || |||||||| |||||| ||||||||||||||| | ||||||||||||||||| |||||||||| ||||| |
|
|
| T |
15032377 |
ggaacattcctgctgagtttgcccaattgaatgttattgaaaatcttgatcttagtgggaattttatgaatggaaccataccatcaatgcttgggcagtt |
15032476 |
T |
|
| Q |
249 |
aaatcgcttagaaacattgaatct |
272 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
15032477 |
aaatcgcttagaaacattgaatct |
15032500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 49 - 272
Target Start/End: Original strand, 15001926 - 15002149
Alignment:
| Q |
49 |
ttggagctggcaacaaataatttaagtggcttcgtcccaaaacaacttggaagattatctatgttattacacttaaatatgagccaaaataagtttgaag |
148 |
Q |
| |
|
|||||||| |||||||||||||| ||||| ||| |||| || ||||||| | || ||||||||||| || |||||| ||||||||||||||||||| | |
|
|
| T |
15001926 |
ttggagcttgcaacaaataatttgagtggattcatccctgaaaaacttggtatgttgtctatgttattgcagttaaatttgagccaaaataagtttgagg |
15002025 |
T |
|
| Q |
149 |
gaaacattcctgatgagattggacagttaaaagttattgagaatcttaatcttagtgggaattctttgaatggaaccataccaacaatgcttggacagtt |
248 |
Q |
| |
|
| |||||||||| |||| |||| || || || |||||||| || ||| ||||||||||||||||| ||||||||||||||||| |||||||||| ||||| |
|
|
| T |
15002026 |
ggaacattcctgttgagtttggccaattgaatgttattgaaaaccttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagtt |
15002125 |
T |
|
| Q |
249 |
aaatcgcttagaaacattgaatct |
272 |
Q |
| |
|
||||| |||||||||||||||||| |
|
|
| T |
15002126 |
aaatcacttagaaacattgaatct |
15002149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 49 - 272
Target Start/End: Original strand, 15016934 - 15017157
Alignment:
| Q |
49 |
ttggagctggcaacaaataatttaagtggcttcgtcccaaaacaacttggaagattatctatgttattacacttaaatatgagccaaaataagtttgaag |
148 |
Q |
| |
|
|||||||| ||| |||||||||| ||||||||| |||| || ||||||| | || |||| |||||| | |||||| ||||||||||||||||||| | |
|
|
| T |
15016934 |
ttggagcttgcagcaaataatttcagtggcttcatccctgaaaaacttggtatgttgtctaggttattgaagttaaatttgagccaaaataagtttgagg |
15017033 |
T |
|
| Q |
149 |
gaaacattcctgatgagattggacagttaaaagttattgagaatcttaatcttagtgggaattctttgaatggaaccataccaacaatgcttggacagtt |
248 |
Q |
| |
|
| |||||||||| |||| |||| || || || |||||||| |||||| ||||||||||||||||| ||||||||||||||||| |||||||||| ||||| |
|
|
| T |
15017034 |
ggaacattcctgttgagtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagtt |
15017133 |
T |
|
| Q |
249 |
aaatcgcttagaaacattgaatct |
272 |
Q |
| |
|
||||| |||||||||||||||||| |
|
|
| T |
15017134 |
aaatcacttagaaacattgaatct |
15017157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 48 - 272
Target Start/End: Original strand, 14467621 - 14467845
Alignment:
| Q |
48 |
cttggagctggcaacaaataatttaagtggcttcgtcccaaaacaacttggaagattatctatgttattacacttaaatatgagccaaaataagtttgaa |
147 |
Q |
| |
|
||||||||| ||||||||||||||||||| | ||||||||||||||||||| || || |||||||||||||| ||| | ||| |||||| ||||||| |
|
|
| T |
14467621 |
cttggagctttcaacaaataatttaagtggttcaatcccaaaacaacttggaagtttgtcaatgttattacacttgaatttaagcaaaaatatgtttgaa |
14467720 |
T |
|
| Q |
148 |
ggaaacattcctgatgagattggacagttaaaagttattgagaatcttaatcttagtgggaattctttgaatggaaccataccaacaatgcttggacagt |
247 |
Q |
| |
|
||||||||||||| ||| |||| || ||||| ||| |||| ||||| ||||||||| ||||| |||||| |||||||| ||| ||||| ||||||||| |
|
|
| T |
14467721 |
ggaaacattcctgtcgagtttggccaattaaatgttcttgaagatcttgatcttagtgagaattttttgaacggaaccattccagcaatgtttggacagt |
14467820 |
T |
|
| Q |
248 |
taaatcgcttagaaacattgaatct |
272 |
Q |
| |
|
|||||| |||||||||||||||||| |
|
|
| T |
14467821 |
taaatcacttagaaacattgaatct |
14467845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 49 - 272
Target Start/End: Original strand, 15036839 - 15037062
Alignment:
| Q |
49 |
ttggagctggcaacaaataatttaagtggcttcgtcccaaaacaacttggaagattatctatgttattacacttaaatatgagccaaaataagtttgaag |
148 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||| ||| || ||||||| | || |||| |||||| || || ||| ||||||| |||||| |||| | |
|
|
| T |
15036839 |
ttggagcttgcaacaaataacttaagtggcttcatcctggaaaaacttggtatgttgtctaggttattgcagttgaatttgagccataataagcttgagg |
15036938 |
T |
|
| Q |
149 |
gaaacattcctgatgagattggacagttaaaagttattgagaatcttaatcttagtgggaattctttgaatggaaccataccaacaatgcttggacagtt |
248 |
Q |
| |
|
| |||||||||| |||| |||| || || || |||||||| || ||| ||||||||||||||||| ||||||||||||||||| |||||||||| ||||| |
|
|
| T |
15036939 |
ggaacattcctgttgagtttggccaattgaatgttattgaaaaccttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagtt |
15037038 |
T |
|
| Q |
249 |
aaatcgcttagaaacattgaatct |
272 |
Q |
| |
|
||||| |||||||||||||||||| |
|
|
| T |
15037039 |
aaatcacttagaaacattgaatct |
15037062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 83 - 272
Target Start/End: Original strand, 14481838 - 14482027
Alignment:
| Q |
83 |
tcccaaaacaacttggaagattatctatgttattacacttaaatatgagccaaaataagtttgaaggaaacattcctgatgagattggacagttaaaagt |
182 |
Q |
| |
|
||||||||||||||||||| || || |||||||||||||| ||| | ||| |||||| |||||||||||||||||||| ||| |||| || ||||| || |
|
|
| T |
14481838 |
tcccaaaacaacttggaagtttgtcaatgttattacacttgaatttaagcaaaaatatgtttgaaggaaacattcctgtcgagtttggccaattaaatgt |
14481937 |
T |
|
| Q |
183 |
tattgagaatcttaatcttagtgggaattctttgaatggaaccataccaacaatgcttggacagttaaatcgcttagaaacattgaatct |
272 |
Q |
| |
|
| |||| ||||| ||||||||| ||||| |||||| |||||||| ||| ||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
14481938 |
tcttgaagatcttgatcttagtgagaattttttgaacggaaccattccagcaatgtttggacagttaaatcacttagaaacattgaatct |
14482027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 48 - 275
Target Start/End: Complemental strand, 14533039 - 14532812
Alignment:
| Q |
48 |
cttggagctggcaacaaataatttaagtggcttcgtcccaaaacaacttggaagattatctatgttattacacttaaatatgagccaaaataagtttgaa |
147 |
Q |
| |
|
||||||||| | || ||||||||||||||||||| |||| | | ||||||||| || ||| |||| |||| || ||| |||||||||||||||| ||| |
|
|
| T |
14533039 |
cttggagcttgaaaaaaataatttaagtggcttcatccctagaagacttggaaggttgtctgagttaatacatttgaatttgagccaaaataagttcgaa |
14532940 |
T |
|
| Q |
148 |
ggaaacattcctgatgagattggacagttaaaagttattgagaatcttaatcttagtgggaattctttgaatggaaccataccaacaatgcttggacagt |
247 |
Q |
| |
|
||||||||||||| |||| ||| || ||||| |||||||| ||||| ||||||||| ||| | ||| ||||||||||||| ||||||||||||||| |
|
|
| T |
14532939 |
ggaaacattcctgttgagtttgaccaattaaaggttattgaagatcttgatcttagtgaaaatgttatgagtggaaccataccatcaatgcttggacagt |
14532840 |
T |
|
| Q |
248 |
taaatcgcttagaaacattgaatctttc |
275 |
Q |
| |
|
|||||| |||| |||||||||||||||| |
|
|
| T |
14532839 |
taaatcacttacaaacattgaatctttc |
14532812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 48 - 272
Target Start/End: Original strand, 14503800 - 14504024
Alignment:
| Q |
48 |
cttggagctggcaacaaataatttaagtggcttcgtcccaaaacaacttggaagattatctatgttattacacttaaatatgagccaaaataagtttgaa |
147 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||| | | ||||||||| || ||| |||| |||| || ||| |||||||||||||||||||| |
|
|
| T |
14503800 |
cttggagcttgcaacaaataatttaagtggcttcatccctagaagacttggaaggttgtctgagttaatacatttgaatttgagccaaaataagtttgaa |
14503899 |
T |
|
| Q |
148 |
ggaaacattcctgatgagattggacagttaaaagttattgagaatcttaatcttagtgggaattctttgaatggaaccataccaacaatgcttggacagt |
247 |
Q |
| |
|
||||||||||| | |||| |||| | ||||| |||||||| ||||| |||| ||||| |||| | |||||||||| ||||| ||||| ||||| || |
|
|
| T |
14503900 |
ggaaacattcccgttgagtttggccgattaaatgttattgaagatcttgatctcagtggaaattttatgaatggaacgataccttcaatgtttggagtgt |
14503999 |
T |
|
| Q |
248 |
taaatcgcttagaaacattgaatct |
272 |
Q |
| |
|
|||||| ||||||||||||||||| |
|
|
| T |
14504000 |
taaatcatttagaaacattgaatct |
14504024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 44 - 272
Target Start/End: Original strand, 6305 - 6533
Alignment:
| Q |
44 |
ctatcttggagctggcaacaaataatttaagtggcttcgtcccaaaacaacttggaagattatctatgttattacacttaaatatgagccaaaataagtt |
143 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||| ||||| ||||||||||||||||| ||| ||||| |||| ||| |||||||||||||||| |
|
|
| T |
6305 |
ctatcttggagcttgcaacaaataatttcagtggcttcatcccagaacaacttggaagattacctaatttattggacttgaatttgagccaaaataagtt |
6404 |
T |
|
| Q |
144 |
tgaaggaaacattcctgatgagattggacagttaaaagttattgagaatcttaatcttagtgggaattctttgaatggaaccataccaacaatgcttgga |
243 |
Q |
| |
|
||||||| ||||||||| |||| ||||||| || ||| ||||||| |||||| ||||||| | |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6405 |
tgaaggagacattcctgctgagtttggacaattgaaaattattgaaaatcttgatcttagcgagaatgttttgaatggaaccataccaacaatgcttgga |
6504 |
T |
|
| Q |
244 |
cagttaaatcgcttagaaacattgaatct |
272 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
6505 |
gagttaaatcgcttagaaacattgaatct |
6533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 48 - 275
Target Start/End: Original strand, 12597 - 12824
Alignment:
| Q |
48 |
cttggagctggcaacaaataatttaagtggcttcgtcccaaaacaacttggaagattatctatgttattacacttaaatatgagccaaaataagtttgaa |
147 |
Q |
| |
|
||||||||| | || ||||||||||||||||||| |||| | | ||||||||| || ||| |||| |||| || ||| |||||||||||| ||||||| |
|
|
| T |
12597 |
cttggagcttgaaaaaaataatttaagtggcttcatccctagaagacttggaaggttgtctgagttaatacatttgaatttgagccaaaataggtttgaa |
12696 |
T |
|
| Q |
148 |
ggaaacattcctgatgagattggacagttaaaagttattgagaatcttaatcttagtgggaattctttgaatggaaccataccaacaatgcttggacagt |
247 |
Q |
| |
|
||||||||||| |||| |||| || ||| |||||||||| ||||| | |||||||| |||| |||||| |||||||||||| ||||||||||||||| |
|
|
| T |
12697 |
ggaaacattcccattgagtttggccaattagaagttattgaagatcttgaccttagtggaaattttttgaacggaaccataccatcaatgcttggacagt |
12796 |
T |
|
| Q |
248 |
taaatcgcttagaaacattgaatctttc |
275 |
Q |
| |
|
|||||| | || |||||||||||||||| |
|
|
| T |
12797 |
taaatcacatacaaacattgaatctttc |
12824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 44 - 272
Target Start/End: Original strand, 6949 - 7177
Alignment:
| Q |
44 |
ctatcttggagctggcaacaaataatttaagtggcttcgtcccaaaacaacttggaagattatctatgttattacacttaaatatgagccaaaataagtt |
143 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||| ||||| ||||||||||||||||| ||| ||||| |||| ||| |||||||||||||||| |
|
|
| T |
6949 |
ctatcttggagcttgcaacaaataatttcagtggcttcatcccagaacaacttggaagattacctaatttattggacttgaatttgagccaaaataagtt |
7048 |
T |
|
| Q |
144 |
tgaaggaaacattcctgatgagattggacagttaaaagttattgagaatcttaatcttagtgggaattctttgaatggaaccataccaacaatgcttgga |
243 |
Q |
| |
|
||||||| ||||||||| |||| ||||||| || ||| ||||||| |||||| ||||||| | |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7049 |
tgaaggagacattcctgctgagtttggacaattgaaaattattgaaaatcttgatcttagcgagaatgttttgaatggaaccataccaacaatgcttgga |
7148 |
T |
|
| Q |
244 |
cagttaaatcgcttagaaacattgaatct |
272 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
7149 |
gagttaaatcgcttagaaacattgaatct |
7177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 48 - 275
Target Start/End: Original strand, 13240 - 13467
Alignment:
| Q |
48 |
cttggagctggcaacaaataatttaagtggcttcgtcccaaaacaacttggaagattatctatgttattacacttaaatatgagccaaaataagtttgaa |
147 |
Q |
| |
|
||||||||| | || ||||||||||||||||||| |||| | | ||||||||| || ||| |||| |||| || ||| |||||||||||| ||||||| |
|
|
| T |
13240 |
cttggagcttgaaaaaaataatttaagtggcttcatccctagaagacttggaaggttgtctgagttaatacatttgaatttgagccaaaataggtttgaa |
13339 |
T |
|
| Q |
148 |
ggaaacattcctgatgagattggacagttaaaagttattgagaatcttaatcttagtgggaattctttgaatggaaccataccaacaatgcttggacagt |
247 |
Q |
| |
|
||||||||||| |||| |||| || ||| |||||||||| ||||| | |||||||| |||| |||||| |||||||||||| ||||||||||||||| |
|
|
| T |
13340 |
ggaaacattcccattgagtttggccaattagaagttattgaagatcttgaccttagtggaaattttttgaacggaaccataccatcaatgcttggacagt |
13439 |
T |
|
| Q |
248 |
taaatcgcttagaaacattgaatctttc |
275 |
Q |
| |
|
|||||| | || |||||||||||||||| |
|
|
| T |
13440 |
taaatcacatacaaacattgaatctttc |
13467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 275
Target Start/End: Complemental strand, 15670874 - 15670747
Alignment:
| Q |
148 |
ggaaacattcctgatgagattggacagttaaaagttattgagaatcttaatcttagtgggaattctttgaatggaaccataccaacaatgcttggacagt |
247 |
Q |
| |
|
||||| |||||||||||| ||||||| || ||||| |||| | |||| |||| ||||| ||| |||||||||| | |||||| ||||||||||| | |
|
|
| T |
15670874 |
ggaaatattcctgatgagtttggacaatttaaagtccttgaaagtcttgatctcagtggaaatgttttgaatggagctataccaccaatgcttggaaacc |
15670775 |
T |
|
| Q |
248 |
taaatcgcttagaaacattgaatctttc |
275 |
Q |
| |
|
| || |||||||||||||||||| |||| |
|
|
| T |
15670774 |
tgaaacgcttagaaacattgaatatttc |
15670747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 275
Target Start/End: Complemental strand, 15677276 - 15677149
Alignment:
| Q |
148 |
ggaaacattcctgatgagattggacagttaaaagttattgagaatcttaatcttagtgggaattctttgaatggaaccataccaacaatgcttggacagt |
247 |
Q |
| |
|
||||| |||||| |||| ||||||| || ||||| |||| | |||| |||| ||||| ||| |||||| ||| |||||||| ||||||||||| | |
|
|
| T |
15677276 |
ggaaatattccttttgagtttggacaatttaaagtccttgaaagtcttgatctcagtggaaatgttttgaaaggagccataccaccaatgcttggaaacc |
15677177 |
T |
|
| Q |
248 |
taaatcgcttagaaacattgaatctttc |
275 |
Q |
| |
|
| || |||||||||||||||||| |||| |
|
|
| T |
15677176 |
tgaaacgcttagaaacattgaatatttc |
15677149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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