View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9466_low_23 (Length: 253)
Name: NF9466_low_23
Description: NF9466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9466_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 49808488 - 49808254
Alignment:
| Q |
1 |
aaagtggtcctataccactacgatcaaactcagttggtttgtgttcaattgtcatccctaagtaccccactcaagaattactcatctccaggtagaaata |
100 |
Q |
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| T |
49808488 |
aaagtggtcctatactactacgatcaaactcagttggtttgtgttcaattgtcatccctaagtaccccactcaagaattactcatctccaggtagaaata |
49808389 |
T |
|
| Q |
101 |
acttgaaaagtttacaactccaaaattcaatctataaaacacatacactgatacacatgcacgacactaacacatacactaataacaattttaaaaaatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49808388 |
acttgaaaagtttacaactccaaaattcaatctataaaacacatacactgatacacatgcacgacactaacacatacactaataacaattttaaaaaatg |
49808289 |
T |
|
| Q |
201 |
gagtacatataatttgaaaagtcagacaccagaca |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
49808288 |
gagtacatataatttgaaaagtcagacaccagaca |
49808254 |
T |
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