View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9466_low_26 (Length: 249)

Name: NF9466_low_26
Description: NF9466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9466_low_26
NF9466_low_26
[»] chr7 (1 HSPs)
chr7 (10-225)||(6933404-6933622)
[»] chr4 (4 HSPs)
chr4 (10-225)||(509465-509683)
chr4 (10-141)||(18088338-18088470)
chr4 (10-108)||(9072066-9072164)
chr4 (193-225)||(18088253-18088285)
[»] chr1 (2 HSPs)
chr1 (10-141)||(15758532-15758664)
chr1 (193-225)||(15758718-15758750)
[»] scaffold0002 (1 HSPs)
scaffold0002 (10-225)||(171143-171361)
[»] chr5 (1 HSPs)
chr5 (10-59)||(21547914-21547963)


Alignment Details
Target: chr7 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 10 - 225
Target Start/End: Original strand, 6933404 - 6933622
Alignment:
Q  10 gtgttggttgtaagaggtgtgagtccgtttgtccgacggattttttaagtgtttgggtttatttatggcctgaaacaactcgaagtatgggtctagctta 109  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  6933404 gtgttggttgtaagaggtgtgagtccgcttgtccgacggatttcttaagtgttcgggtttatttagggcctgaaacaactcgaagtatgggtctagctta 6933503  T
Q  110 ttgatac-attcaaaaaacaccacacgaatacgnnnnnnnaccggcaaaaagccgtgctcnnnnnnntattttgta--nnnnnnnnagcacgggcttttc 206  Q
    |||||||  ||||||||||||||||||||||||       || |||||||| ||||||||       |||||||||          ||||||||||||||    
T  6933504 ttgatacgtttcaaaaaacaccacacgaatacgtttttttactggcaaaaacccgtgctcaaaaaaatattttgtattttttttttagcacgggcttttc 6933603  T
Q  207 tggcccaagtgtatcttat 225  Q
    |||||||||||||||||||    
T  6933604 tggcccaagtgtatcttat 6933622  T

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Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 10 - 225
Target Start/End: Original strand, 509465 - 509683
Alignment:
Q  10 gtgttggttgtaagaggtgtgagtccgtttgtccgacggattttttaagtgtttgggtttatttatggcctgaaacaactcgaagtatgggtctagctta 109  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  509465 gtgttggttgtaagaggtgtgagtccgcttgtccgacggatttcttaagtgttcgggtttatttagggcctgaaacaactcgaagtatgggtctagctta 509564  T
Q  110 ttgatac-attcaaaaaacaccacacgaatacgnnnnnnnaccggcaaaaagccgtgctcnnnnnnntattttgta--nnnnnnnnagcacgggcttttc 206  Q
    |||||||  ||||||||||||||||||||||||       || |||||||| ||||||||       |||||||||          ||||||||||||||    
T  509565 ttgatacgtttcaaaaaacaccacacgaatacgtttttttactggcaaaaacccgtgctcaaaaaaatattttgtatttttttttgagcacgggcttttc 509664  T
Q  207 tggcccaagtgtatcttat 225  Q
    |||||||||||||||||||    
T  509665 tggcccaagtgtatcttat 509683  T

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Target: chr4; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 10 - 141
Target Start/End: Complemental strand, 18088470 - 18088338
Alignment:
Q  10 gtgttggttgtaagaggtgtgagtccgtttgtccgacggattttttaagtgtttgggtttatttatggcctgaaacaactcgaagtatgggtctagctta 109  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  18088470 gtgttggttgtaagaggtgtgagtccgcttgtccgacggatttcttaagtgttcgggtttatttagggcctgaaacaactcgaagtatgggtctagctta 18088371  T
Q  110 ttgatac-attcaaaaaacaccacacgaatacg 141  Q
    |||||||  ||||||||||||||||||||||||    
T  18088370 ttgatacgtttcaaaaaacaccacacgaatacg 18088338  T

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Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 10 - 108
Target Start/End: Original strand, 9072066 - 9072164
Alignment:
Q  10 gtgttggttgtaagaggtgtgagtccgtttgtccgacggattttttaagtgtttgggtttatttatggcctgaaacaactcgaagtatgggtctagctt 108  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  9072066 gtgttggttgtaagaggtgtgagtccgtttgtctgacggatttcttaagtgttcgggtttatttagggcctgaaacaactcgaagtatgggtctagctt 9072164  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 225
Target Start/End: Complemental strand, 18088285 - 18088253
Alignment:
Q  193 agcacgggcttttctggcccaagtgtatcttat 225  Q
    |||||||||||||||||||||||||||||||||    
T  18088285 agcacgggcttttctggcccaagtgtatcttat 18088253  T

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Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 10 - 141
Target Start/End: Original strand, 15758532 - 15758664
Alignment:
Q  10 gtgttggttgtaagaggtgtgagtccgtttgtccgacggattttttaagtgtttgggtttatttatggcctgaaacaactcgaagtatgggtctagctta 109  Q
    ||||||||||||||||||||||||||| |||||||||||||||  |||||||| ||||||||||| ||||||||||||||||||||||  ||||||||||    
T  15758532 gtgttggttgtaagaggtgtgagtccgcttgtccgacggatttcataagtgttcgggtttatttagggcctgaaacaactcgaagtataagtctagctta 15758631  T
Q  110 ttgatac-attcaaaaaacaccacacgaatacg 141  Q
    |||||||  |||||||||||||||||| |||||    
T  15758632 ttgatacgtttcaaaaaacaccacacggatacg 15758664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 225
Target Start/End: Original strand, 15758718 - 15758750
Alignment:
Q  193 agcacgggcttttctggcccaagtgtatcttat 225  Q
    ||||||||||||| |||||||||||||||||||    
T  15758718 agcacgggcttttttggcccaagtgtatcttat 15758750  T

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Target: scaffold0002 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 10 - 225
Target Start/End: Original strand, 171143 - 171361
Alignment:
Q  10 gtgttggttgtaagaggtgtgagtccgtttgtccgacggattttttaagtgtttgggtttatttatggcctgaaacaactcgaagtatgggtctagctta 109  Q
    |||| ||||||||||| ||||| || |  || ||||| ||||||||||||||  | ||||||||| ||||||||||||||||||||||||||||||||||    
T  171143 gtgtgggttgtaagagatgtgaatctgcctgcccgacagattttttaagtgtccgcgtttatttagggcctgaaacaactcgaagtatgggtctagctta 171242  T
Q  110 ttgatac-attcaaaaaacaccacacgaatacgnnnnnnnaccggcaaaaagccgtgctcnnnnnnntattttgta--nnnnnnnnagcacgggcttttc 206  Q
    |||||||  ||||||||||||||||||||||||       || |||||||| ||||||||       |||||||||          ||||||||||||||    
T  171243 ttgatacgtttcaaaaaacaccacacgaatacgtttttttactggcaaaaacccgtgctcaaaaaaatattttgtatttttttttgagcacgggcttttc 171342  T
Q  207 tggcccaagtgtatcttat 225  Q
    |||||||||||||||||||    
T  171343 tggcccaagtgtatcttat 171361  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 21547914 - 21547963
Alignment:
Q  10 gtgttggttgtaagaggtgtgagtccgtttgtccgacggattttttaagt 59  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  21547914 gtgttggttgtaagaggtgtgagtccgcttgtccgacggatttcttaagt 21547963  T

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