View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9466_low_27 (Length: 244)
Name: NF9466_low_27
Description: NF9466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9466_low_27 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 45829689 - 45829914
Alignment:
| Q |
17 |
cagatttgtgtaagtttttcaccttcaatttcttccctttttatgtgtatgatgaaatgtctcattgaatttcaatctttagttctttagtttcatggaa |
116 |
Q |
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| T |
45829689 |
cagatttgtgtaagtttttcaccttcaatatcttccccttttatgtgtttgatgaaatgtctcattgaatttcaatctttagttctttagtttcatggaa |
45829788 |
T |
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| Q |
117 |
ctaaatcgacgttgacaaaaatttctctattttttcagtctctattgaggagagcttcactgagagaaagtgatgcatttgcatttctaagggccgataa |
216 |
Q |
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| T |
45829789 |
ctaaatggacattgacaaaaatttctctattttttcag--tctattgaggagagcttcactgacagaaagtgatgcatttgcatttctaagggccgataa |
45829886 |
T |
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| Q |
217 |
tgaagattgtattacgtattctgggttc |
244 |
Q |
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| T |
45829887 |
tgaagattgtattacatattctgggttc |
45829914 |
T |
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Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 100 - 240
Target Start/End: Complemental strand, 42558333 - 42558193
Alignment:
| Q |
100 |
tctttagtttcatggaactaaatcgacgttgacaaaaatttctctattttttcagtctctattgaggagagcttcactgagagaaagtgatgcatttgca |
199 |
Q |
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| T |
42558333 |
tctttagtttcgtggaactaaatcgacgttgacaaaattttctctattttttcaggatctattgaggcgagcttcactgacagaaagtgatgcattcgca |
42558234 |
T |
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| Q |
200 |
tttctaagggccgataatgaagattgtattacgtattctgg |
240 |
Q |
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| T |
42558233 |
tttctaagggccgataatgaagattgtattacgtattctgg |
42558193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 22141377 - 22141304
Alignment:
| Q |
17 |
cagatttgtgtaagtttttcaccttcaatttcttccctttttatgtgtatgatgaaatgtctcattgaatttca |
90 |
Q |
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| T |
22141377 |
cagatttgtttaagtttttcaccttcactttcatccccttttatgtgtttgatgaaatgtctcattgaatttca |
22141304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 240
Target Start/End: Original strand, 29160064 - 29160137
Alignment:
| Q |
167 |
agagcttcactgagagaaagtgatgcatttgcatttctaagggccgataatgaagattgtattacgtattctgg |
240 |
Q |
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| T |
29160064 |
agagcttcgcagacagagagtgatgcatttgcttttctaaaggctgacgatgaagattgtattacatattctgg |
29160137 |
T |
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