View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9466_low_28 (Length: 239)
Name: NF9466_low_28
Description: NF9466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9466_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 4927479 - 4927698
Alignment:
| Q |
4 |
cattaaacattaatgttaatcggacatgttaatgaatcattttttgattaaatattaatgttgtaaattcaaactcaaaactaacatcaataaacttaga |
103 |
Q |
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| T |
4927479 |
cattaaatattaatgtcaatcagacatgttaatgaatcatttttcgattaaatattaatgttgtaaattcaaactcaaaactaacatcaataaacttata |
4927578 |
T |
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| Q |
104 |
tgtatggaacaaatataaataacaatcaataatcagacagtctaaagcatcaacaacatatttagatctaattaaacaatcaagtgtaaagtaaaatcac |
203 |
Q |
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||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||| |||| || |
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| T |
4927579 |
tgtgtggaacaaatataaataacaatcaataatcaaacagtctaaagcaacaacagcatatctagatctaattgaacaatcaagtgtaaagcaaaaccaa |
4927678 |
T |
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| Q |
204 |
aaataaaccaaagaacaaca |
223 |
Q |
| |
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|| | ||||||||||||||| |
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| T |
4927679 |
aattgaaccaaagaacaaca |
4927698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 9633516 - 9633568
Alignment:
| Q |
166 |
tagatctaattaaacaatcaagtgtaaagtaaaatcacaaataaaccaaagaa |
218 |
Q |
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| T |
9633516 |
tagatctaatataacaatcaattgtaaaataaaatcacaattgaaccaaagaa |
9633568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 171
Target Start/End: Complemental strand, 18641990 - 18641927
Alignment:
| Q |
108 |
tggaacaaatataaataacaatcaataatcagacagtctaaagcatcaacaacatatttagatc |
171 |
Q |
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| T |
18641990 |
tggaacaaacatgaatgacaatcaataatcaaacagtctcaagcaacaaaaacatatctagatc |
18641927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 173
Target Start/End: Complemental strand, 6399006 - 6398895
Alignment:
| Q |
62 |
tgttgtaaattcaaactcaaaactaacatcaataaacttagatgtatggaacaaatataaataacaatcaataatcagacagtctaaagcatcaacaaca |
161 |
Q |
| |
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|||||| |||||| ||||||| || |||| ||||||| |||||| |||| ||| ||| ||| ||| |||||| || | ||||| ||||| |||||||| |
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| T |
6399006 |
tgttgtgaattcagactcaaatctcacataaataaacatagatgcctggagcaagtatcaatggcaaccaataaccaaatagtctcaagcaacaacaaca |
6398907 |
T |
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| Q |
162 |
tatttagatcta |
173 |
Q |
| |
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||| |||||||| |
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| T |
6398906 |
tatctagatcta |
6398895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 221
Target Start/End: Complemental strand, 22079596 - 22079523
Alignment:
| Q |
148 |
aagcatcaacaacatatttagatctaattaaacaatcaagtgtaaagtaaaatcacaaataaaccaaagaacaa |
221 |
Q |
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| T |
22079596 |
aagcaacaacaacttatctagatctaatcaaacaaacaagtgtaaagcaaaacaacaattgaatcaaagaacaa |
22079523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 160
Target Start/End: Original strand, 36263662 - 36263727
Alignment:
| Q |
95 |
aaacttagatgtatggaacaaatataaataacaatcaataatcagacagtctaaagcatcaacaac |
160 |
Q |
| |
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|||||||||||||||||||||||||||| ||| || ||| || ||||||| ||||| ||||||| |
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| T |
36263662 |
aaacttagatgtatggaacaaatataaaaggcaaccattaaccaaacagtctcaagcaacaacaac |
36263727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 205
Target Start/End: Complemental strand, 20937941 - 20937884
Alignment:
| Q |
148 |
aagcatcaacaacatatttagatctaattaaacaatcaagtgtaaagtaaaatcacaa |
205 |
Q |
| |
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||||| |||||||| || |||||||||| | ||||||||||||||||||||||||| |
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| T |
20937941 |
aagcagcaacaacaaatctagatctaatctattaatcaagtgtaaagtaaaatcacaa |
20937884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 28684706 - 28684770
Alignment:
| Q |
163 |
atttagatctaattaaacaatcaagtgtaaagtaaaatcacaaataaaccaaagaacaacatgat |
227 |
Q |
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||||||||||||| ||||| ||||||| |||||||| ||||| ||||||||||| || ||||| |
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| T |
28684706 |
atttagatctaatctaacaaccaagtgtcaagtaaaaacacaatcaaaccaaagaaaaatatgat |
28684770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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