View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9466_low_33 (Length: 219)

Name: NF9466_low_33
Description: NF9466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9466_low_33
NF9466_low_33
[»] chr2 (2 HSPs)
chr2 (1-202)||(30782186-30782372)
chr2 (139-202)||(30244446-30244509)
[»] scaffold1178 (1 HSPs)
scaffold1178 (1-95)||(2225-2319)
[»] chr6 (3 HSPs)
chr6 (48-89)||(20737891-20737932)
chr6 (1-61)||(14434479-14434539)
chr6 (1-39)||(4479821-4479859)
[»] chr8 (4 HSPs)
chr8 (1-39)||(32850563-32850601)
chr8 (1-39)||(37177997-37178035)
chr8 (1-39)||(32854858-32854896)
chr8 (1-39)||(37173706-37173744)
[»] chr3 (1 HSPs)
chr3 (1-39)||(39163943-39163981)
[»] chr1 (1 HSPs)
chr1 (7-79)||(2009540-2009615)


Alignment Details
Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 30782372 - 30782186
Alignment:
Q  1 atttgtaattttccatatttctaggttccttaatgtatctagaaatccattcatgtatctgcaagttctagagagggtcatttaatattcctagggtttt 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30782372 atttgtaattttccatattcctaggttccttaatgtatctagaaatccattcatgtatctgcaagttctagagagggtcatttaatattcctagggtttt 30782273  T
Q  101 attagaactttctatattagaactttctagttatattgtgcattttcatatttctcacgatttagggaaggagatcactttggagataagttagctaatt 200  Q
    ||||||||||               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30782272 attagaactt---------------tctagttatattgtgcattttcatatttctcacgatttagggaaggagatcactttggagataagttagctaatt 30782188  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 139 - 202
Target Start/End: Complemental strand, 30244509 - 30244446
Alignment:
Q  139 tgcattttcatatttctcacgatttagggaaggagatcactttggagataagttagctaattat 202  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  30244509 tgcattttcatatttctcccgatttagggaaggagatcaatttggagataagttagctaattat 30244446  T

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Target: scaffold1178 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold1178
Description:

Target: scaffold1178; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 2319 - 2225
Alignment:
Q  1 atttgtaattttccatatttctaggttccttaatgtatctagaaatccattcatgtatctgcaagttctagagagggtcatttaatattcctagg 95  Q
    ||||||||||||||||||| |||||||||||||| |||||| || || ||||||||||| | |||||| |||||  |||||||||||||||||||    
T  2319 atttgtaattttccatattcctaggttccttaatatatctaaaagtctattcatgtatcagtaagttccagagaatgtcatttaatattcctagg 2225  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 20737932 - 20737891
Alignment:
Q  48 cattcatgtatctgcaagttctagagagggtcatttaatatt 89  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  20737932 cattcatgtatctgcaagttctagatagggtcatttaatatt 20737891  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 14434479 - 14434539
Alignment:
Q  1 atttgtaattttccatatttctaggttccttaatgtatctagaaatccattcatgtatctg 61  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| ||  | ||||||||||    
T  14434479 atttgtaattttccatattcctaggttcattaatgtatctagaagtctctccatgtatctg 14434539  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 4479859 - 4479821
Alignment:
Q  1 atttgtaattttccatatttctaggttccttaatgtatc 39  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  4479859 atttgtaattttccatattcctaggttccttaatgtatc 4479821  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 32850601 - 32850563
Alignment:
Q  1 atttgtaattttccatatttctaggttccttaatgtatc 39  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  32850601 atttgtaattttccatattcctaggttccttaatgtatc 32850563  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 37178035 - 37177997
Alignment:
Q  1 atttgtaattttccatatttctaggttccttaatgtatc 39  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  37178035 atttgtaattttccatattcctaggttccttaatgtatc 37177997  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 32854896 - 32854858
Alignment:
Q  1 atttgtaattttccatatttctaggttccttaatgtatc 39  Q
    ||||| ||||||||||||| |||||||||||||||||||    
T  32854896 atttgaaattttccatattcctaggttccttaatgtatc 32854858  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 37173744 - 37173706
Alignment:
Q  1 atttgtaattttccatatttctaggttccttaatgtatc 39  Q
    |||||||||||| |||||| |||||||||||||||||||    
T  37173744 atttgtaatttttcatattcctaggttccttaatgtatc 37173706  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 39163981 - 39163943
Alignment:
Q  1 atttgtaattttccatatttctaggttccttaatgtatc 39  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  39163981 atttgtaattttccatattcctaggttccttaatgtatc 39163943  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 79
Target Start/End: Original strand, 2009540 - 2009615
Alignment:
Q  7 aattttccatatttctaggttccttaatgtatctagaaatccattcatgtat---ctgcaagttctagagagggtc 79  Q
    |||||| |||||| ||| ||||| |||||||||||||| | |||||||||||   || ||||||||| ||||||||    
T  2009540 aatttttcatattcctaagttccctaatgtatctagaagttcattcatgtattgactacaagttctaaagagggtc 2009615  T

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