View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9466_low_34 (Length: 217)
Name: NF9466_low_34
Description: NF9466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9466_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 204
Target Start/End: Original strand, 39702813 - 39702997
Alignment:
| Q |
20 |
gttttggtggttcacgtttcacagcagcatcactaggtgcaaatcagtttgacaaacttgaagatcaaggaacatttttcaactggttctttttcacttt |
119 |
Q |
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| T |
39702813 |
gttttggtggttcacgtttcacagcagcatcactaggtgcaaatcagtttgacaaacttgaagatcaaggaacatttttcaactggttctttttcacttt |
39702912 |
T |
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| Q |
120 |
ctatgttgcttctggagctgcattaactggagttatttacattgaagataatttgggttggtctttaggatttggtatctgtgct |
204 |
Q |
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| T |
39702913 |
ctatgttgcttctggagctgcattaactggagttatttacattgaagataatttgggttggtctttaggatttggtatctgtgct |
39702997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 20 - 204
Target Start/End: Complemental strand, 39930486 - 39930302
Alignment:
| Q |
20 |
gttttggtggttcacgtttcacagcagcatcactaggtgcaaatcagtttgacaaacttgaagatcaaggaacatttttcaactggttctttttcacttt |
119 |
Q |
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| T |
39930486 |
gttttggtggttcgcgtttcacagcagcatcattaggtgcaaatcaatttgacaaaccagaacatcaaggaacatttttcaactggtacttcttcacttt |
39930387 |
T |
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| Q |
120 |
ctatgttgcttctggagctgcattaactggagttatttacattgaagataatttgggttggtctttaggatttggtatctgtgct |
204 |
Q |
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| T |
39930386 |
ctatgttgcttcaggagctgcattaactggaattatttacattgaagataatttgggttgggctataggatttggtatttgtgct |
39930302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 39692840 - 39693022
Alignment:
| Q |
20 |
gttttggtggttcacgtttcacagcagcatcactaggtgcaaatcagtttgacaaacttgaagatcaaggaacatttttcaactggttctttttcacttt |
119 |
Q |
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| T |
39692840 |
gttttggtggttcacgttacacagcagcatcactaggagccaatcaatttaacaaaccagaacatcagggaatatttttcaactggttctttttcgcttt |
39692939 |
T |
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| Q |
120 |
ctatgttgcttctggagctgcattaactggagttatttacattgaagataatttgggttggtctttaggatttggtatctgtg |
202 |
Q |
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| T |
39692940 |
ctatgttgcttcaggagctgcattaactggaattatttacattgaagataatttgggttgggctacaggatttggtatctgtg |
39693022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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