View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9466_low_5 (Length: 429)
Name: NF9466_low_5
Description: NF9466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9466_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 56 - 416
Target Start/End: Complemental strand, 36060220 - 36059864
Alignment:
| Q |
56 |
tcatcttcattgggtataaacaacaaaactaatgtagtcagtcgtgatgcagtcctcggtgaagaaggacgatcaaattttggacctcacaataagaaat |
155 |
Q |
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| T |
36060220 |
tcatcttcattgggtataaacaacaaaactaatgtagtcagtcgtgatgcagtcctcgatgaagaaggacgatcaaattttgaacctcacaataagaggt |
36060121 |
T |
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| Q |
156 |
acattttatttttagaatttgaagaagaaacatctataaaagttcaataagtgccatactcaccaacattgcccacttatgaagacacttagagtgaaag |
255 |
Q |
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| T |
36060120 |
acattttatttttagaa-----agaagaaacatctatagaagttcaataagtgccatactcaccaacattgcccacttatgaagacacttagagtgaaag |
36060026 |
T |
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| Q |
256 |
gatcatgatacatataggaagtcttcaacatctctttgacaatgcagaagccttatcaccattaatacttgaagatctctat-gaaaaaactgagaaata |
354 |
Q |
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| T |
36060025 |
gatcatgatacatataggaagtcttcaacatctctttgacaatgcagaagccttatcaccatgaatacttgaagatctctataaaaaaaattgagaaata |
36059926 |
T |
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| Q |
355 |
aaagccaaaatgatatgtggtaactaatctttcttctaaaagagcattggactactgatgtc |
416 |
Q |
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| T |
36059925 |
aaagccaaaatgatatgtggtaactaatctttcttctaaaagagcattggactactgatgtc |
36059864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 36060337 - 36060286
Alignment:
| Q |
7 |
aaagacaccacatgaagcatgaagtgaaggaaagtctggtatctaaagctca |
58 |
Q |
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| T |
36060337 |
aaagacaccacatgaagcatgaagtgaaggaaagtctggtatctaaagctca |
36060286 |
T |
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