View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9466_low_6 (Length: 379)
Name: NF9466_low_6
Description: NF9466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9466_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 51911315 - 51910955
Alignment:
| Q |
1 |
aattttgtaccctcgagggacaaagttcaaatccccttaaagacaattgtaaaatattcattaatgtcactcgaattaataataattttcgctttcccaa |
100 |
Q |
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| T |
51911315 |
aattttgtaccctcgagg-acaaagttcaaatccccttaaagacaattgtaaaatattcattaatgtcactcgaattaataataattttcgctttcccaa |
51911217 |
T |
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| Q |
101 |
tannnnnnnn--gaaagagcacaatttaacaatttccaatagtcttgctactcaaaactttcttagtataagcaaataaagttacaagataaagaaattt |
198 |
Q |
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| T |
51911216 |
tatattttttttgaaagagcacaatttaacaatttccaatagtcttactactcaaaactttcttagtataagcaaataaagttacaagataaagaaattt |
51911117 |
T |
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| Q |
199 |
gtaccagagccatttccagaagcgacatgaccggcgattcttcttgtttctgcttgaaagagaaaggacataagattcatgatctcttctaaactaacaa |
298 |
Q |
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| T |
51911116 |
gtaccagagccatttccagaagcgacatgaccggcgattcttcttgtttctgcttgaaagagaaaggacataagaatcatgatctcttctaaactaacaa |
51911017 |
T |
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| Q |
299 |
aagcattgattgattgatgagaacatttcttacgaaggtaacagaggatctgaatttgccac |
360 |
Q |
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| T |
51911016 |
aagcattgattgattgatgagaacatttcttacgaaggtaacagaggatctgaatttgccac |
51910955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 299
Target Start/End: Original strand, 18420683 - 18420783
Alignment:
| Q |
199 |
gtaccagagccatttccagaagcgacatgaccggcgattcttcttgtttctgcttgaaagagaaaggacataagattcatgatctcttctaaactaacaa |
298 |
Q |
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| T |
18420683 |
gtaccacagccacttccataagcgacatgtcttacggttctttttggtcctgcatgaaagagaaaagacataagaatcatgatttctttagaactaacaa |
18420782 |
T |
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| Q |
299 |
a |
299 |
Q |
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| T |
18420783 |
a |
18420783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 33129861 - 33129817
Alignment:
| Q |
46 |
attgtaaaatattcattaatgtcactcgaattaataataattttc |
90 |
Q |
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| T |
33129861 |
attgtaaaataatcattaatttcactgtaattaataataattttc |
33129817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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