View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9467_low_3 (Length: 414)

Name: NF9467_low_3
Description: NF9467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9467_low_3
NF9467_low_3
[»] chr3 (4 HSPs)
chr3 (50-132)||(28537939-28538021)
chr3 (234-374)||(28538122-28538263)
chr3 (350-388)||(4638172-4638210)
chr3 (330-382)||(7648764-7648816)
[»] chr5 (3 HSPs)
chr5 (317-382)||(7616945-7617010)
chr5 (333-399)||(35638066-35638132)
chr5 (332-398)||(39728396-39728462)
[»] scaffold0045 (1 HSPs)
scaffold0045 (331-385)||(58064-58118)
[»] chr6 (3 HSPs)
chr6 (335-384)||(11142629-11142678)
chr6 (333-384)||(8888908-8888959)
chr6 (319-388)||(14107377-14107446)
[»] chr4 (1 HSPs)
chr4 (295-382)||(37369037-37369124)
[»] chr1 (1 HSPs)
chr1 (345-388)||(10507717-10507760)
[»] chr8 (3 HSPs)
chr8 (330-383)||(18091427-18091480)
chr8 (330-382)||(583840-583892)
chr8 (330-374)||(33401829-33401873)
[»] chr2 (2 HSPs)
chr2 (299-388)||(26805314-26805403)
chr2 (330-398)||(41187717-41187785)
[»] scaffold0209 (1 HSPs)
scaffold0209 (330-382)||(12600-12652)


Alignment Details
Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 28537939 - 28538021
Alignment:
Q  50 tagaaactttatgtgaaatggttaagaacagagaaaatcaacactgacccagtaatgtaatgagggtgaaaatcacatatatc 132  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28537939 tagaaactttatgtgaaatggttaagaacagagaaaatcaacactgacccagtaatgtaatgagggtgaaaatcacatatatc 28538021  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 234 - 374
Target Start/End: Original strand, 28538122 - 28538263
Alignment:
Q  234 tggggggtta-cggtgacggagtttatttttgtgccgttagtttatagnnnnnnnnnnnnngttgacttttgcatcggttttcaatccactaataacggg 332  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||              ||  |||||||| |||||||||||||||||||||||||    
T  28538122 tggggggttaacggtgacggagtttttttttgtgccgttagtttatagtttttttttttttcttttcttttgcaccggttttcaatccactaataacggg 28538221  T
Q  333 cgactaatttgactcaagcgtagaggtatgcacactggtcaa 374  Q
    ||||||||| |||||| ||||||||  ||||||||| |||||    
T  28538222 cgactaattcgactcatgcgtagagacatgcacactagtcaa 28538263  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 4638210 - 4638172
Alignment:
Q  350 gcgtagaggtatgcacactggtcaaacgttgtttctcct 388  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  4638210 gcgtagaggtatgcgcactggtcaagcgttgtttctcct 4638172  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 382
Target Start/End: Complemental strand, 7648816 - 7648764
Alignment:
Q  330 gggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtt 382  Q
    |||||||||||  | |||  |||||||||||||| ||||||||||||||||||    
T  7648816 gggcgactaatccggctcgtgcgtagaggtatgcgcactggtcaaacgttgtt 7648764  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 317 - 382
Target Start/End: Complemental strand, 7617010 - 7616945
Alignment:
Q  317 atccactaataacgggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtt 382  Q
    |||||| ||||| || |||||||| ||||||| ||||||||| ||||| |||||||||||||||||    
T  7617010 atccaccaataatggacgactaatctgactcatgcgtagaggcatgcatactggtcaaacgttgtt 7616945  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 399
Target Start/End: Original strand, 35638066 - 35638132
Alignment:
Q  333 cgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtttctccttataatcgaat 399  Q
    |||||||| ||||||  ||||||||||||||||||||  ||||||||||| ||||| | ||||||||    
T  35638066 cgactaatctgactcgtgcgtagaggtatgcacactgaccaaacgttgttcctcctgaaaatcgaat 35638132  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 398
Target Start/End: Complemental strand, 39728462 - 39728396
Alignment:
Q  332 gcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtttctccttataatcgaa 398  Q
    |||||||||| ||||| |||||||||| ||||||||||| |||  ||||||||  || |||||||||    
T  39728462 gcgactaattcgactcgagcgtagaggcatgcacactggccaagtgttgtttcctctgataatcgaa 39728396  T

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Target: scaffold0045 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 385
Target Start/End: Original strand, 58064 - 58118
Alignment:
Q  331 ggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtttct 385  Q
    ||||||||||   ||||| |||||||||||| |||||||||||||||||||||||    
T  58064 ggcgactaatccaactcatgcgtagaggtatacacactggtcaaacgttgtttct 58118  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 384
Target Start/End: Complemental strand, 11142678 - 11142629
Alignment:
Q  335 actaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtttc 384  Q
    |||||| ||||||| ||||||||| |||| ||||||||||||||||||||    
T  11142678 actaatctgactcatgcgtagaggcatgcgcactggtcaaacgttgtttc 11142629  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 384
Target Start/End: Complemental strand, 8888959 - 8888908
Alignment:
Q  333 cgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtttc 384  Q
    ||||||||  |||||| |||||||||||||| |||||| |||||||||||||    
T  8888959 cgactaatccgactcatgcgtagaggtatgcgcactggccaaacgttgtttc 8888908  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 388
Target Start/End: Original strand, 14107377 - 14107446
Alignment:
Q  319 ccactaataacgggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtttctcct 388  Q
    |||||||||| |||||||||||  | |||| ||||||||| |||  |||||||||| ||||||| |||||    
T  14107377 ccactaataatgggcgactaatccggctcatgcgtagaggcatgtgcactggtcaagcgttgttcctcct 14107446  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 295 - 382
Target Start/End: Original strand, 37369037 - 37369124
Alignment:
Q  295 ttgacttttgcatcggttttcaatccactaataacgggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtt 382  Q
    |||||||| |||||||||| | || ||| ||||  |||||||| ||  |||||  ||||||||| ||||||||||| |||||||||||    
T  37369037 ttgactttcgcatcggtttccgattcaccaatagtgggcgacttatccgactcgtgcgtagaggcatgcacactggacaaacgttgtt 37369124  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 345 - 388
Target Start/End: Complemental strand, 10507760 - 10507717
Alignment:
Q  345 ctcaagcgtagaggtatgcacactggtcaaacgttgtttctcct 388  Q
    |||| ||||||||||||||||||||| ||||||||||| |||||    
T  10507760 ctcatgcgtagaggtatgcacactggccaaacgttgttcctcct 10507717  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 383
Target Start/End: Complemental strand, 18091480 - 18091427
Alignment:
Q  330 gggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgttt 383  Q
    |||||||||||| | |||  ||||||||| |||| |||||||||||||||||||    
T  18091480 gggcgactaattcgcctcgtgcgtagaggcatgcgcactggtcaaacgttgttt 18091427  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 382
Target Start/End: Complemental strand, 583892 - 583840
Alignment:
Q  330 gggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtt 382  Q
    |||||||||||  |||||| ||||||||| |||| |||||||||| |||||||    
T  583892 gggcgactaatccgactcatgcgtagaggcatgcgcactggtcaagcgttgtt 583840  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 374
Target Start/End: Original strand, 33401829 - 33401873
Alignment:
Q  330 gggcgactaatttgactcaagcgtagaggtatgcacactggtcaa 374  Q
    |||||||||||  |||||| ||||||||| |||||||||||||||    
T  33401829 gggcgactaatccgactcatgcgtagaggcatgcacactggtcaa 33401873  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 388
Target Start/End: Complemental strand, 26805403 - 26805314
Alignment:
Q  299 cttttgcatcggttttcaatccactaataacgggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtttctcct 388  Q
    ||||||||||||||||| | |||| ||    |||||||||||  |||||| ||||||||| |||  |||||| ||||||| |||||||||    
T  26805403 cttttgcatcggttttcgagccaccaaaggtgggcgactaatccgactcatgcgtagaggcatgtgcactggccaaacgtcgtttctcct 26805314  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 398
Target Start/End: Complemental strand, 41187785 - 41187717
Alignment:
Q  330 gggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtttctccttataatcgaa 398  Q
    ||||||||||| || |||| ||||||||| ||| |||||||||||  |||||| | ||| |||||||||    
T  41187785 gggcgactaatatgtctcatgcgtagaggcatggacactggtcaagtgttgttccccctcataatcgaa 41187717  T

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Target: scaffold0209 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 382
Target Start/End: Complemental strand, 12652 - 12600
Alignment:
Q  330 gggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtt 382  Q
    |||||||||||  |||||| ||||||||| |||| |||||||||| |||||||    
T  12652 gggcgactaatccgactcatgcgtagaggcatgcgcactggtcaagcgttgtt 12600  T

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