View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9467_low_6 (Length: 324)
Name: NF9467_low_6
Description: NF9467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9467_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 16 - 315
Target Start/End: Complemental strand, 27257609 - 27257310
Alignment:
| Q |
16 |
atagaaacggtaagaattattatttttatggttgtgaagggaagggaaggcgtccaagaagaaggaatggtaacctccagggaaagtggagataacgttg |
115 |
Q |
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| T |
27257609 |
atagaaacggtaagaattattatttttatggttgtgaagggaagggaaggcgtccgagaagaaggaacggtaacctccagggaaagtagagataacgttg |
27257510 |
T |
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| Q |
116 |
tgaacgataggatccaacagcaaagaaggccactttgaggtgcatatgttccgccatagatcttcgttgttgtggcaaatcatgtgacggagttctgaac |
215 |
Q |
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| T |
27257509 |
tgaacgataggatccaacagcaaagaaggccacgttgaggtgcatatgttccgccatagatcttcgttgctgtggcaaatcatgtgacgaagttctgaac |
27257410 |
T |
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| Q |
216 |
acacagaggataagacggttaaggttgtgccgtcgagacggggaaggatgtaggtatgaatgatgtctgtatctaacctactgaagatattcattctcat |
315 |
Q |
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| T |
27257409 |
acacagaggataagacggttaaggttgtgccgtcgagacggggaaggatgtgggtatgaatgatgtctgtatctaacctactgaagatattcattctcat |
27257310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 53 - 315
Target Start/End: Complemental strand, 27240970 - 27240708
Alignment:
| Q |
53 |
agggaagggaaggcgtccaagaagaaggaatggtaacctccagggaaagtggagataacgttgtgaacgataggatccaacagcaaagaaggccactttg |
152 |
Q |
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| T |
27240970 |
agggaagggaatgcgtcggagaaaaaggaacggtaaccaccagggaaagtggagatgacgttgtgaacaataggatccttcagtaaagaaggccactttg |
27240871 |
T |
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| Q |
153 |
aggtgcatatgttccgccatagatcttcgttgttgtggcaaatcatgtgacggagttctgaacacacagaggataagacggttaaggttgtgccgtcgag |
252 |
Q |
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| T |
27240870 |
aggtgcatatgttccgccatagatcttcgttgttgtggcaaatcatgtgacggagttctgaacatacagagaataagacgattaaggttgtgccgtcgag |
27240771 |
T |
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| Q |
253 |
acggggaaggatgtaggtatgaatgatgtctgtatctaacctactgaagatattcattctcat |
315 |
Q |
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| T |
27240770 |
gcggggaaggatgtgggtatgcatgatgtctggatctaacctactgaatatactcatactcat |
27240708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 72 - 315
Target Start/End: Complemental strand, 27246480 - 27246240
Alignment:
| Q |
72 |
agaagaaggaatggtaacctccagggaaagtggagataacgttgtgaacgataggatccaacagcaaagaaggccactttgaggtgcatatgttccgcca |
171 |
Q |
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| T |
27246480 |
agaagaaggaatggtaaccaccagggaaagtggagatgacgttgttagctatgggatccaatagcaaagaaggccatgttgaggtgcatatgttccgcca |
27246381 |
T |
|
| Q |
172 |
tagatcttcgttgttgtggcaaatcatgtgacggagttctgaacacacagaggataagacggttaaggttgtgccgtcgagacggggaaggatgtaggta |
271 |
Q |
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| T |
27246380 |
taaatct---ttgtcgttgcagatcatgtggcggagttctgaagatacggaggagaaggcggttaaggttgttccatcgaggcggggcaggatgtgggca |
27246284 |
T |
|
| Q |
272 |
tgaatgatgtctgtatctaacctactgaagatattcattctcat |
315 |
Q |
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| T |
27246283 |
ccgataatatctggatccaacgtactgaagatattcatgctcat |
27246240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 72 - 266
Target Start/End: Complemental strand, 27253260 - 27253069
Alignment:
| Q |
72 |
agaagaaggaatggtaacctccagggaaagtggagataacgttgtgaacgataggatccaacagcaaagaaggccactttgaggtgcatatgttccgcca |
171 |
Q |
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| T |
27253260 |
agaagaaggaacggtaaccaccgggaaaagtggagatgacgttgttagctatgggatccaatagcaaagaaggccatgttgaagtgcatatgttccgcca |
27253161 |
T |
|
| Q |
172 |
tagatcttcgttgttgtggcaaatcatgtgacggagttctgaacacacagaggataagacggttaaggttgtgccgtcgagacggggaaggatgt |
266 |
Q |
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| T |
27253160 |
tagatcttcgttgtt---gcagatcatgtggcggagttctgaagatacacaggataatatggttaaggttgtgccatcgaggcggggcaggatgt |
27253069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 49 - 303
Target Start/End: Original strand, 7501997 - 7502250
Alignment:
| Q |
49 |
gtgaagggaagggaaggcgtccaagaagaaggaatggtaacctccagggaaagtggagataacgttgtgaacgataggatccaacagcaaagaaggccac |
148 |
Q |
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||||||||||||||| || || ||||||| ||| |||||| || |||||||||||||| || | || |||||| ||||||| || ||||||||| |
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| T |
7501997 |
gtgaagggaagggaacgcatcggagaagaatgaactgtaaccaccggggaaagtggagatgacatcgttaacgattggatccataagg---gaaggccac |
7502093 |
T |
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| Q |
149 |
tttgaggtgcatatgttccgccatagatcttcgttgttgtggcaaatcatgtgacggagttctgaacacacagaggataagacggttaa--ggttgtgcc |
246 |
Q |
| |
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||||||||||| || ||||||||||||| | |||||||| ||| |||| ||| |||||||||| | |||| | |||||| ||||||| |||||| |
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| T |
7502094 |
tttgaggtgcaaatattccgccatagattgttgttgttgttgcagatcaggtggcggagttctggagacacggtcgataaggcggttaaatcagtgtgcc |
7502193 |
T |
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| Q |
247 |
gtcgagacggggaaggatgtaggtatgaatgatgtctgtatctaacctactgaagat |
303 |
Q |
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|||||| || |||||||||| | | | ||||||||||| |||||||||||||||||| |
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| T |
7502194 |
gtcgaggcgtggaaggatgtggctgttaatgatgtctgaatctaacctactgaagat |
7502250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 309
Target Start/End: Original strand, 7500564 - 7500818
Alignment:
| Q |
49 |
gtgaagggaagggaaggcgtccaagaagaaggaatggtaacctccagggaaagtggagataacgttgtgaacgataggatccaacagcaaagaaggccac |
148 |
Q |
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||||| |||||| || ||||| ||||||||||| ||||||| ||||||||||||| ||||| || | |||| | |||| ||| | |||||||| |
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| T |
7500564 |
gtgaatggaaggaaacgcgtcggagaagaaggaacggtaaccaccagggaaagtggtgataatgtggctaacggttggat---gcagaaggcaaggccac |
7500660 |
T |
|
| Q |
149 |
tttgaggtgcatatgttccgccatagatcttcgttgttgtggcaaatcatgtgacggagttctgaacacacagaggataagacggttaaggttgtgccgt |
248 |
Q |
| |
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| T |
7500661 |
atggaggtgcaaatgttccgccataattcctcgttgtt---gcagatcaagtggcgaaggtcggaacatacacaggacaatgccattaaggctgccccat |
7500757 |
T |
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| Q |
249 |
cgagacggggaaggatgtaggtatgaatgatgtctgtatctaacctactgaagatattcat |
309 |
Q |
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|||| || |||||||| ||||| || |||||||||| ||||||||||||||| ||||||| |
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| T |
7500758 |
cgaggcgtggaaggatataggtctggatgatgtctggatctaacctactgaaattattcat |
7500818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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