View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9468_high_4 (Length: 331)
Name: NF9468_high_4
Description: NF9468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9468_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 2 - 314
Target Start/End: Complemental strand, 25267243 - 25266931
Alignment:
| Q |
2 |
catatatactttttgatttgttgacatgtccatttagtcaaaattttaactgttggattaagattgtaccttaatcaaacagacgaaatatggacgcatt |
101 |
Q |
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| T |
25267243 |
catatatactttttgatttgttgacatgtccatttagtcaaaattttaactgttggattaagattgtaccttaatcagacagacgaaatatggacgcatt |
25267144 |
T |
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| Q |
102 |
gcaattcctttttaatgttttcgtaatccgattttagtttacatatttaatcttcgtctgttgattaggaatggagctatcttagaggtggacttactac |
201 |
Q |
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| T |
25267143 |
gcaattcctttttaatgttttcgtaatccgattttagtttacatatttaatcttcgtctgttgtttaggaatggagctatcttagaggtggacttactac |
25267044 |
T |
|
| Q |
202 |
tcttgaccgcgattatggatggcttaataacattcaccatgacattggaactcatgtcgttcatcaccttttccctcaaattccacactatcacctagtt |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
25267043 |
tcttgaccgcgattatggatggcttaataacattcaccatgacattggaactcatgtcgttcatcaccttttccctcaaattccacactatcatctagtt |
25266944 |
T |
|
| Q |
302 |
gaagctgtgagta |
314 |
Q |
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| T |
25266943 |
gaagctgtgagta |
25266931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 25267357 - 25267297
Alignment:
| Q |
12 |
ttttgatttgttgacatgtccatttagtcaaaattttaactgttggattaagattgtacctt |
73 |
Q |
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| T |
25267357 |
ttttggtttgttgacatgtccattcagtc-aaatcttgactgttggatgaggattgtacctt |
25267297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 168 - 315
Target Start/End: Original strand, 4706739 - 4706886
Alignment:
| Q |
168 |
aggaatggagctatcttagaggtggacttactactcttgaccgcgattatggatggcttaataacattcaccatgacattggaactcatgtcgttcatca |
267 |
Q |
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||||||||||||| |||||||| |||||||| ||||| || || || ||||||| | | ||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
4706739 |
aggaatggagctaccttagaggcggacttacaactctcgatcgtgactatggattgataaataacattcatcatgacattggaactcatgtcattcatca |
4706838 |
T |
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| Q |
268 |
ccttttccctcaaattccacactatcacctagttgaagctgtgagtat |
315 |
Q |
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| | || |||||||| |||||||| ||| || | |||||||||||||| |
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| T |
4706839 |
cttatttcctcaaatcccacactaccacttaatagaagctgtgagtat |
4706886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 167 - 306
Target Start/End: Complemental strand, 30185442 - 30185303
Alignment:
| Q |
167 |
taggaatggagctatcttagaggtggacttactactcttgaccgcgattatggatggcttaataacattcaccatgacattggaactcatgtcgttcatc |
266 |
Q |
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|||||||||| |||||| ||||||||||| || || |||| || || ||||| ||| ||||||||||||| ||||||||||| |||||||| ||||||| |
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| T |
30185442 |
taggaatggacctatctaagaggtggactaacaaccgttgatcgtgactatggttggattaataacattcatcatgacattggcactcatgttgttcatc |
30185343 |
T |
|
| Q |
267 |
accttttccctcaaattccacactatcacctagttgaagc |
306 |
Q |
| |
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| T |
30185342 |
atctcttccctcaaattcctcattatcacttggttgaagc |
30185303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 294
Target Start/End: Complemental strand, 25838591 - 25838512
Alignment:
| Q |
215 |
tatggatggcttaataacattcaccatgacattggaactcatgtcgttcatcaccttttccctcaaattccacactatca |
294 |
Q |
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||||| ||| |||| |||||||||||||||||||| || ||||| ||||||| ||||| || ||||||||||| ||||| |
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| T |
25838591 |
tatggttgggttaacaacattcaccatgacattggcacccatgttattcatcatctttttccacaaattccacattatca |
25838512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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