View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9468_low_1 (Length: 647)
Name: NF9468_low_1
Description: NF9468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9468_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-141; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 15 - 400
Target Start/End: Complemental strand, 27969386 - 27969016
Alignment:
| Q |
15 |
tcaacaagaaattatgtgtttgatttatgatggtcaaaggtgttaccgtttgttgtttctgcaagttaaaaattatgactgacatcacttagaattaata |
114 |
Q |
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| T |
27969386 |
tcaataagaaattacttgtttgatttatgatggtcaaaggcgttaccatttgttgttcctgcaagttaaaaattatgactgtcatcacttagaattaata |
27969287 |
T |
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| Q |
115 |
gaaccaatcagttcactcacaagttacaaatatgattgtcatcactttaaatattgattttctttgtatgaggatctaattatatttctctctgtcttac |
214 |
Q |
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| T |
27969286 |
gaacaaatcagttcactcacaagttacaaatatgattgtcatcactttaaaatatgattttct------------ctaattatatttctctctgttctac |
27969199 |
T |
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| Q |
215 |
ctaattctctaaatacagtcacaacaaacaacctttaactaaattgtagacacgatttaaaataaaatggatcttagctacccaatcattctatagtttt |
314 |
Q |
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| T |
27969198 |
ctaattctctaaatacaatcacaacaaacaacctttaactaaatcg---acacgatttaaaataaaatggatcttagctacccaatcattctacagttta |
27969102 |
T |
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| Q |
315 |
tctatagaatcaaaagaaactattttctgtagaaatcaaacagcaagagaaggtattaaatttaaatagtcagaaccaagaaaaag |
400 |
Q |
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| T |
27969101 |
tctagagaatcaaaataaactattttctgtagaaatcaaacagcaagagaaggtattaaatttaaatagtcagaaccaagaaaaag |
27969016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 414 - 632
Target Start/End: Complemental strand, 27968969 - 27968761
Alignment:
| Q |
414 |
agacataaacaacaggagaaaaactgcaccacacaacaacatcacctcttcatcacatatttctgcatgagnnnnnnnncaagtggtgtgtatactagaa |
513 |
Q |
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| T |
27968969 |
agacatagacaacaagagaaaaactgcagaacacaacaacatcacctcttcatcacatatttctgcatgagttttttt-caagtggtgtgtatactagaa |
27968871 |
T |
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| Q |
514 |
attttgaatctacattttttattcctctcactacatacctataaattaaaaaggcttcataataagaatctcacctcatccttgtttgatttccaaaact |
613 |
Q |
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| T |
27968870 |
attttgaatctacattttttattcctctcactacatacctataaat---------gtcataataagaatctcacctcatacttgtttgatttccaaaact |
27968780 |
T |
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| Q |
614 |
gatcttcttagttcttact |
632 |
Q |
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| T |
27968779 |
gatcttcttagttcttact |
27968761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 4e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 64 - 393
Target Start/End: Complemental strand, 36067119 - 36066787
Alignment:
| Q |
64 |
ttgttgtttctgcaagttaaaaattatgactgacatcacttagaattaatagaaccaatcagttcactcacaagttacaaatatgattgtcatcacttta |
163 |
Q |
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|||||||| ||||||||||||||| |||| | ||||| |||||| | ||||| ||||| |||| ||| || ||||||||||||||||||||||||| | |
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| T |
36067119 |
ttgttgttcctgcaagttaaaaat-atgatggtcatcatttagaaacagtagaatcaatctgttcgctcgcacgttacaaatatgattgtcatcacttaa |
36067021 |
T |
|
| Q |
164 |
aatat-------tgattttctttgtatgaggatctaattatatttctctctgtcttacctaattctctaaatacagtcacaacaaacaacctttaactaa |
256 |
Q |
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||| | |||||||| |||||||||||||||||| || ||||| ||| ||||||||||||| ||||||||| ||||||||| ||||||||| |
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| T |
36067020 |
aatttaaaaatatgattttcaatgtatgaggatctaattacatgtctctatgttctacctaattctctcaatacagtc---acaaacaacttttaactaa |
36066924 |
T |
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| Q |
257 |
attgtagacacgatttaaaa-taaaatggatcttagctacccaatcattctatagtttttctatagaatcaaaagaaactattttctgtagaaatcaaac |
355 |
Q |
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|||||| ||| |||| |||| |||||| | ||||||||||||||||||||| |||||||| | |||||||| || |||||||| | ||||| ||| |
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| T |
36066923 |
attgtaaacatgattaaaaattaaaattaaacttagctacccaatcattctacagtttttcaagcgaatcaaactgaattattttctacataaatcgaac |
36066824 |
T |
|
| Q |
356 |
agcaagagaaggtattaaatttaaatagtcagaaccaa |
393 |
Q |
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||||| | ||| |||| |||||||||||||| |||||| |
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| T |
36066823 |
agcaacaaaagttatt-aatttaaatagtcataaccaa |
36066787 |
T |
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