View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9468_low_12 (Length: 331)
Name: NF9468_low_12
Description: NF9468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9468_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 49 - 313
Target Start/End: Complemental strand, 11483733 - 11483467
Alignment:
| Q |
49 |
acttcatctcaagtaaaggatgtcatattcaatgaagaaattactagaagaaaagacttgggagcaacttgtttagaggcccttgtcacaaagaacagag |
148 |
Q |
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| T |
11483733 |
acttcatctcaagtaaaggatgtcatattcaatgaagaaattactagaagaaaagacttgggagcaacttgttcagaggcccttgtcacaaagcacagag |
11483634 |
T |
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| Q |
149 |
ggagaaatgtttatttgaaaagcatcaaagaatatcttttagtagaacttcaaaactaaaggctgatatatttgatatggtgttatttacacttaaaaat |
248 |
Q |
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| T |
11483633 |
ggggaaatgtttatttgaaaagcatcaaagaatatcttttagtataacttcaaaactaaaggctgatatattggatatggtgttatttacacttaaaaat |
11483534 |
T |
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| Q |
249 |
aattatcattttagccgaactcgacaaataggtgatgacg--atcatgcaagaatgcccctctctat |
313 |
Q |
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| T |
11483533 |
aattatcattttagccgaactcgataaataggtgatgacgcaatcatgcaagaatgctcctctctat |
11483467 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 17163056 - 17163093
Alignment:
| Q |
242 |
taaaaataattatcattttagccgaactcgacaaatag |
279 |
Q |
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| T |
17163056 |
taaaaataattatcatgttagccgaactcggcaaatag |
17163093 |
T |
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