View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9468_low_16 (Length: 285)

Name: NF9468_low_16
Description: NF9468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9468_low_16
NF9468_low_16
[»] chr1 (2 HSPs)
chr1 (23-198)||(31197929-31198103)
chr1 (180-267)||(31197880-31197967)
[»] chr6 (3 HSPs)
chr6 (18-269)||(26464142-26464382)
chr6 (35-99)||(13379112-13379176)
chr6 (101-131)||(680749-680779)
[»] scaffold0182 (1 HSPs)
scaffold0182 (35-99)||(32489-32553)
[»] chr7 (2 HSPs)
chr7 (35-99)||(21723853-21723917)
chr7 (201-268)||(37912432-37912499)
[»] chr8 (3 HSPs)
chr8 (101-131)||(20385946-20385976)
chr8 (101-131)||(30711233-30711263)
chr8 (101-131)||(30719010-30719040)
[»] chr2 (1 HSPs)
chr2 (101-131)||(44044468-44044498)
[»] chr5 (1 HSPs)
chr5 (35-82)||(26616532-26616582)


Alignment Details
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 23 - 198
Target Start/End: Complemental strand, 31198103 - 31197929
Alignment:
Q  23 acgaacaacaacggaaggaggttctttctctgctgcatatcgtgcacttcaacaaccattttcatcttcaattttctagatttttgttcctgcattcata 122  Q
    |||||||||||  ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31198103 acgaacaacaattgaaggaggttcttcctctgctgcatatcgtccacttcaacaaccattttcatcttcaattttctagatttttgttcctgcattcata 31198004  T
Q  123 aacaaaccacctgattnnnnnnnnnctccacaatcaccattcatcttctcaaatccgcattcatcttctcaaatcc 198  Q
    ||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31198003 aacaaaccacctgatt-aaaaaaaactccacaatcaccattcatcttctcaaatccgcattcatcttctcaaatcc 31197929  T

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Target: chr1; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 180 - 267
Target Start/End: Complemental strand, 31197967 - 31197880
Alignment:
Q  180 cattcatcttctcaaatccacattcatcttctcaaatccgctttttcgtcttctccttcaaattgttcttccgctaattgtgctctct 267  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||    
T  31197967 cattcatcttctcaaatccgcattcatcttctcaaatccgcttttttgtcttctccttcaaaccgttcttccgctaattgtgctctct 31197880  T

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Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 26464382 - 26464142
Alignment:
Q  18 cacagacgaacaacaacggaaggaggttctttctctgctgcatatcgtgcacttcaacaaccattttcatcttcaattttctagatttttgttcctgcat 117  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26464382 cacacacgaacaacaatggaaggaggttctttctctgctgcatatcgtccacttcaacaaccattttcatcttcaattttctagatttttgttcctgcat 26464283  T
Q  118 tcataaacaaaccacctgatt---------nnnnnnnnnctccacaatcaccattcatcttctcaaatccgcattcatcttctcaaatccacattcatct 208  Q
    |||||||||||||||||||||                  | ||||||||||||||||||||||||||||||||||||| ||||||||||||             
T  26464282 tcataaacaaaccacctgatttaaaaaaaaaaaaaaaaaccccacaatcaccattcatcttctcaaatccgcattcattttctcaaatcca--------- 26464192  T
Q  209 tctcaaatccgctttttcgtcttctccttcaaattgttcttccgctaattgtgctctcttc 269  Q
               ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26464191 -----------ctttttcgtcttctccttcaaattgttcttccgctaattgtgctctcttc 26464142  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 99
Target Start/End: Original strand, 13379112 - 13379176
Alignment:
Q  35 ggaaggaggttctttctctgctgcatatcgtgcacttcaacaaccattttcatcttcaattttct 99  Q
    ||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||    
T  13379112 ggaaggaggttctttctctactgcatatcgtcaacttcaacaaccattttcatcttcaattttct 13379176  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 131
Target Start/End: Complemental strand, 680779 - 680749
Alignment:
Q  101 gatttttgttcctgcattcataaacaaacca 131  Q
    |||||||||||||||||||||||||||||||    
T  680779 gatttttgttcctgcattcataaacaaacca 680749  T

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Target: scaffold0182 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 35 - 99
Target Start/End: Complemental strand, 32553 - 32489
Alignment:
Q  35 ggaaggaggttctttctctgctgcatatcgtgcacttcaacaaccattttcatcttcaattttct 99  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  32553 ggaaggaggttctttctctgctgcatatcgtcaacttcaacaaccattttcatcttcaattttct 32489  T

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Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 35 - 99
Target Start/End: Complemental strand, 21723917 - 21723853
Alignment:
Q  35 ggaaggaggttctttctctgctgcatatcgtgcacttcaacaaccattttcatcttcaattttct 99  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  21723917 ggaaggaggttctttctctgctgcatatcgtcaacttcaacaaccattttcatcttcaattttct 21723853  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 268
Target Start/End: Complemental strand, 37912499 - 37912432
Alignment:
Q  201 attcatcttctcaaatccgctttttcgtcttctccttcaaattgttcttccgctaattgtgctctctt 268  Q
    |||||||||||||||||| ||||||| ||||||  |||| || ||||||| |||||||||||||||||    
T  37912499 attcatcttctcaaatcctctttttcatcttcttgttcagatcgttcttctgctaattgtgctctctt 37912432  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 131
Target Start/End: Original strand, 20385946 - 20385976
Alignment:
Q  101 gatttttgttcctgcattcataaacaaacca 131  Q
    |||||||||||||||||||||||||||||||    
T  20385946 gatttttgttcctgcattcataaacaaacca 20385976  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 131
Target Start/End: Original strand, 30711233 - 30711263
Alignment:
Q  101 gatttttgttcctgcattcataaacaaacca 131  Q
    |||||||||||||||||||||||||||||||    
T  30711233 gatttttgttcctgcattcataaacaaacca 30711263  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 131
Target Start/End: Original strand, 30719010 - 30719040
Alignment:
Q  101 gatttttgttcctgcattcataaacaaacca 131  Q
    |||||||||||||||||||||||||||||||    
T  30719010 gatttttgttcctgcattcataaacaaacca 30719040  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 131
Target Start/End: Original strand, 44044468 - 44044498
Alignment:
Q  101 gatttttgttcctgcattcataaacaaacca 131  Q
    |||||||||||||||||||||||||||||||    
T  44044468 gatttttgttcctgcattcataaacaaacca 44044498  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 26616532 - 26616582
Alignment:
Q  35 ggaaggaggttctttctctgctgca---tatcgtgcacttcaacaaccatt 82  Q
    |||||||| ||||||||||||||||   |||||| ||||||||||||||||    
T  26616532 ggaaggagcttctttctctgctgcagcatatcgtccacttcaacaaccatt 26616582  T

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