View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9468_low_17 (Length: 264)
Name: NF9468_low_17
Description: NF9468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9468_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 29 - 223
Target Start/End: Original strand, 32712084 - 32712282
Alignment:
| Q |
29 |
accactacctaaacttaatgatactcttgagacaaggcattatattatttttcaacagaatcaagctaacaaagtggaaattgaggttaaagggagagta |
128 |
Q |
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| T |
32712084 |
accactacctgaatttaatgatactcttgagacaatgcactctattatttttctatagaatcaagctaacaaagtgggaattgaggttaaagggagagta |
32712183 |
T |
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| Q |
129 |
taatcgtgtgaatgagg----tatgagaattcatatgatttttctggaaggtctagcaagtaaggaaagattctctctcatttgagatttctttaaatt |
223 |
Q |
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| T |
32712184 |
taatagtgtgaatgaggtatatatgagaattcatgtggtttttctcggaggtctaccaagtaaggaaagattctctctcatttgagatttctttaaatt |
32712282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 30 - 202
Target Start/End: Complemental strand, 32710537 - 32710363
Alignment:
| Q |
30 |
ccactacctaaacttaatgatactcttgagacaaggcattatattatttttcaacagaatcaagctaacaaagtggaaat-tgaggttaaagggagagta |
128 |
Q |
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|||||||| ||||||||| ||||| | ||||||| |||| ||||||||||||| ||||| ||||||||| |||||||| ||| |||||||||||| | |
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| T |
32710537 |
ccactacccaaacttaattctactcctaagacaagacattctattatttttcaatagaattaagctaacagagtggaaaaatgaagttaaagggagattg |
32710438 |
T |
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| Q |
129 |
taatcgtgtgaatgaggtatgagaattcatatgatttttctggaaggtctagc-aagtaaggaaagattctctct |
202 |
Q |
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|||||||||||| |||||| |||||||||||||||||| ||||||||||| | ||| ||||||||||| ||||| |
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| T |
32710437 |
taatcgtgtgaagaaggtataagaattcatatgatttttttggaaggtctaactaagcaaggaaagattatctct |
32710363 |
T |
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