View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9468_low_18 (Length: 254)
Name: NF9468_low_18
Description: NF9468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9468_low_18 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 25014239 - 25014472
Alignment:
| Q |
18 |
accaaagctactccaaaatccaatcacagcttcttcttcttctgcctcattgctcacaccttcaccttcctgttcatcaatgaatcatgttataaacact |
117 |
Q |
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| T |
25014239 |
accaaagctactccaaaatccaatcacagcttc---ttcttctgcctcattgctctcaccttcaccttcctgttcatcaatgaatcatgttataaacact |
25014335 |
T |
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| Q |
118 |
tataataaaaattaaaattgcaaatcaatgatccatcattttcatatatggtttaattaagaaaacatacatcttcagcttcgaataattgcctgtgtgt |
217 |
Q |
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| T |
25014336 |
tataataaaaattaaaattgcaaatcaatgattcatcattttcatatatggtttaattacgaaagcatacatcttcagcttcaaataattgcctgtgtgt |
25014435 |
T |
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| Q |
218 |
ccatagttgaaagatcaagtacgcaaaatatgcagcc |
254 |
Q |
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| T |
25014436 |
ccatagttgaaagatcaagtaagcaaaatatgcagcc |
25014472 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 251
Target Start/End: Complemental strand, 5130351 - 5130279
Alignment:
| Q |
179 |
aaaacatacatcttcagcttcgaataattgcctgtgtgtccatagttgaaagatcaagtacgcaaaatatgca |
251 |
Q |
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| T |
5130351 |
aaaacatacatcttgtgcttcaaataattgtcggtgagtccatagttggaagaaaaggtatgcaaaatatgca |
5130279 |
T |
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