View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9468_low_2 (Length: 511)
Name: NF9468_low_2
Description: NF9468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9468_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 8 - 499
Target Start/End: Original strand, 20068224 - 20068715
Alignment:
| Q |
8 |
ttggtgttaatagtgatgataaggaggatgaggttggtatgattcgtggtttgtttgagattgggactgggaaattgggttggggtttttgttctttgga |
107 |
Q |
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| T |
20068224 |
ttggtgttaatagtgatgataaggaggatgaggttggtatgattcgtggtttgtttgagattgggactgggaaattgggttggggtttttgttctttgga |
20068323 |
T |
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| Q |
108 |
ttcaattttgcttggttctgctcttgttccttttggtttgatatatcccaaaattggggttttgtggatttctgttcgttgttgttctagggaagttaag |
207 |
Q |
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| T |
20068324 |
ttcaattttgcttggttctgctcttgttccttttggtttgatatatcccaaaattggggtttcgtggatttctgttcgttgttgttctagggaagttaag |
20068423 |
T |
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| Q |
208 |
gtacaattgactcttgagattttggatgtgaatgggagtcctattgagtacaattgttgtgatcttgaagttttggattttaaggttttcggtagagggg |
307 |
Q |
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| T |
20068424 |
gttcaattgactcttgagattttggatgtgaatgggagtcctattgagtacaattgctgtgatcttgaagttttggattttagggttttcggtagagggg |
20068523 |
T |
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| Q |
308 |
aggatatgaatttacaaggtggtggaaggaaagagaggctgtggaatgtgtgttcggatggaatggcgaaattgaaagttacggttgtgcgcaagtgtga |
407 |
Q |
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| T |
20068524 |
aggatgtgaatttacaaggtggtggaaggaaggagaggctgtggaatgtgtgttcggatggaatggcgaaattgaaagttacggttgtgcgcaagtgtga |
20068623 |
T |
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| Q |
408 |
tgcatttgtgaagtttaggtcatgtctctctgattcggttctggtgcgtgaggttttaggggaatgtatgaagggagattcgggtgagtttt |
499 |
Q |
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| T |
20068624 |
tgcatttgtgaagtttaggtcatgtctctctgattcggttctggtgcgtgaagttttaggggaatgtatgaagggagattcgggtgggtttt |
20068715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 50751140 - 50751092
Alignment:
| Q |
32 |
aggatgaggttggtatgattcgtggtttgtttgagattgggactgggaa |
80 |
Q |
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| T |
50751140 |
aggatgaggttggtatgatacgtgggttgtttgagattgggactaggaa |
50751092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 4323377 - 4323425
Alignment:
| Q |
32 |
aggatgaggttggtatgattcgtggtttgtttgagattgggactgggaa |
80 |
Q |
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| T |
4323377 |
aggatgaggttggtatgatacgtgggttgtttgagattgggactaggaa |
4323425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 370
Target Start/End: Original strand, 9219957 - 9219998
Alignment:
| Q |
329 |
gtggaaggaaagagaggctgtggaatgtgtgttcggatggaa |
370 |
Q |
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|||||| ||| |||||||||||||||||||||||| |||||| |
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| T |
9219957 |
gtggaatgaaggagaggctgtggaatgtgtgttcgaatggaa |
9219998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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