View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9468_low_20 (Length: 251)
Name: NF9468_low_20
Description: NF9468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9468_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 43377600 - 43377837
Alignment:
| Q |
1 |
acaggtttggttggacttgaaagaaggtttctcatgttcaatggaggtattggaaagaaacaaatggaatggttgaataatattcttcaagaagcaacaa |
100 |
Q |
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| T |
43377600 |
acaggtttagttggacttgaaagaaggtttctcatgttcaatggaggtattggaaagaaacaaatagaatggttgaataatattcttcaagaagcaacaa |
43377699 |
T |
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| Q |
101 |
aattgaaacaaaaagttgtggtttgttgtcatttgtctctatatcctggtgcatcatctaaggaagcattgttgtggaattatgatgaagtgataaattt |
200 |
Q |
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| T |
43377700 |
aattgaaacaaaaagttgtggtttgttgtcatttgtctctatatcctggtgcatcatctaaggaagcattgttgtggaattatgatgaagtgataaattt |
43377799 |
T |
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| Q |
201 |
gatacatagatatgattgtgtgaaggtttgtttctctg |
238 |
Q |
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| T |
43377800 |
gatacatagatatgattgtgtgaaggtttgtttctctg |
43377837 |
T |
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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 34428604 - 34428800
Alignment:
| Q |
16 |
cttgaaagaaggtttctcatgttcaatggaggtattggaaagaaacaaatggaatggttgaataatattcttcaagaagcaacaaaattgaaacaaaaag |
115 |
Q |
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| T |
34428604 |
cttgaaagaaggtttcttatgtttaacggaggtgttggaaaggaacagatggaatggttggatggtattctccaggatgcaaccaaattgaaacagaaag |
34428703 |
T |
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| Q |
116 |
ttgtggtttgttgtcatttgtctctatatcctggtgcatcatctaaggaagcattgttgtggaattatgatgaagtgataaatttgatacatagata |
212 |
Q |
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| T |
34428704 |
tggttgtcacatgccatctgcctctagatccttgtgcaacatccgaggaggcgctactgtggaattgtgatgaagtgatgaatttgatacacagata |
34428800 |
T |
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