View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9468_low_21 (Length: 238)
Name: NF9468_low_21
Description: NF9468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9468_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 43377189 - 43376966
Alignment:
| Q |
1 |
gcctatagtaacgaggaacaccaaggaatgaacgtccatcaggaatatcactatattgaacatcagatattaatccaaatgaaaagagaggttgtttgtg |
100 |
Q |
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| T |
43377189 |
gcctatagtaacgaggaacaccaaggaatgaacgtccatcaggaatatcactatattgaacatcagatattaatccaaatgaaaagagaggttgtttgtg |
43377090 |
T |
|
| Q |
101 |
atcatcatgtgcattttctaaacaactttctgaacccatggtgtttgtacctaatttccacaagcacatcacctattggaaatgtaacaaacgtcatcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
43377089 |
atcatcatgtgcattttctaaacaactttctgaacccatggtgtttgtacctaatttccacaagcagatcacctattggaaatgtaacaaacgtcatcaa |
43376990 |
T |
|
| Q |
201 |
aataggacttttccatgtacattc |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
43376989 |
aataggacttttccatgtacattc |
43376966 |
T |
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