View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9468_low_27 (Length: 223)
Name: NF9468_low_27
Description: NF9468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9468_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 16216261 - 16216455
Alignment:
| Q |
14 |
caaaggaagagagaacaaaaatgaaggaaatctaggtcctaatttgttgttagcaaaattaacctcttcaagagaggttaatcttttgagattaggaaca |
113 |
Q |
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| T |
16216261 |
caaaggaagagagatcaaaaatgaaggaaatccaggtcctaatttgttgttagcaaaattaacctcttcaagagaggttaatcttttgagattaggaaca |
16216360 |
T |
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| Q |
114 |
cttccattgaaaaaattatcagccaaaacaagactcttgagatttttcattgaagaaactgataatggaatttttccatacaagaaatttgatga |
208 |
Q |
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| T |
16216361 |
cttccattgaaaaaattatcagccaaaacaagactcttgagatttttcattgaagaaactgataatggaatttttccatacaagaaatttgatga |
16216455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 16963516 - 16963710
Alignment:
| Q |
14 |
caaaggaagagagaacaaaaatgaaggaaatctaggtcctaatttgttgttagcaaaattaacctcttcaagagaggttaatcttttgagattaggaaca |
113 |
Q |
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| T |
16963516 |
caaaggaagagagaacagaaatgaaggaaatccaggtcctaatttgttgttagcaagattaatctcttcaagagaggttaatcttttgagattaggaaca |
16963615 |
T |
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| Q |
114 |
cttccattgaaaaaattatcagccaaaacaagactcttgagatttttcattgaagaaactgataatggaatttttccatacaagaaatttgatga |
208 |
Q |
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| T |
16963616 |
cttccattgaaaaaattatcagccaaaacaagactcttaagacttttcattgaagaaactgatgatggaatttttccatacaagaaatttgatga |
16963710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 67 - 171
Target Start/End: Complemental strand, 24825399 - 24825295
Alignment:
| Q |
67 |
caaaattaacctcttcaagagaggttaatcttttgagattaggaacacttccattgaaaaaattatcagccaaaacaagactcttgagatttttcattga |
166 |
Q |
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|||||||||||||||||||||||||||| || || |||| |||| | |||||||||||| ||||||||| | ||||| |||||| | ||| |||||||| |
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| T |
24825399 |
caaaattaacctcttcaagagaggttaaactcttaagatctggaatatttccattgaaaagattatcagcaacaacaatactcttcaaattcttcattga |
24825300 |
T |
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| Q |
167 |
agaaa |
171 |
Q |
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| T |
24825299 |
agaaa |
24825295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 101 - 206
Target Start/End: Original strand, 48895984 - 48896089
Alignment:
| Q |
101 |
gagattaggaacacttccattgaaaaaattatcagccaaaacaagactcttgagatttttcattgaagaaactgataatggaatttttccatacaagaaa |
200 |
Q |
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||||||| | ||||||||||| |||| |||||||| |||||||||||||||||| ||||| | || |||| |||| |||||||||| |||||| |||| |
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| T |
48895984 |
gagattatgtacacttccattaaaaacattatcagtcaaaacaagactcttgagctttttgaaagaggaaattgatgatggaattttatcatacatgaaa |
48896083 |
T |
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| Q |
201 |
tttgat |
206 |
Q |
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|||||| |
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| T |
48896084 |
tttgat |
48896089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 148
Target Start/End: Original strand, 45485571 - 45485624
Alignment:
| Q |
95 |
tcttttgagattaggaacacttccattgaaaaaattatcagccaaaacaagact |
148 |
Q |
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| T |
45485571 |
tcttttgagactagaaacacatccattgaaaacattatcttccaaaacaagact |
45485624 |
T |
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