View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9468_low_30 (Length: 217)

Name: NF9468_low_30
Description: NF9468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9468_low_30
NF9468_low_30
[»] chr4 (8 HSPs)
chr4 (1-201)||(53968460-53968660)
chr4 (46-181)||(24343466-24343601)
chr4 (94-147)||(20743277-20743330)
chr4 (94-147)||(31243547-31243600)
chr4 (74-134)||(7012053-7012113)
chr4 (86-122)||(25390910-25390946)
chr4 (85-125)||(36386232-36386272)
chr4 (94-168)||(3144630-3144704)
[»] chr5 (8 HSPs)
chr5 (95-188)||(21137697-21137788)
chr5 (86-188)||(26205718-26205820)
chr5 (65-125)||(19293444-19293504)
chr5 (94-125)||(18162062-18162093)
chr5 (95-144)||(31264446-31264495)
chr5 (94-147)||(43554528-43554581)
chr5 (86-122)||(11596479-11596515)
chr5 (90-122)||(23287373-23287405)
[»] chr6 (8 HSPs)
chr6 (94-147)||(34446572-34446625)
chr6 (44-119)||(25096380-25096455)
chr6 (94-144)||(12235521-12235571)
chr6 (94-147)||(6389750-6389803)
chr6 (71-119)||(4859140-4859188)
chr6 (48-120)||(7625083-7625155)
chr6 (94-146)||(12086345-12086397)
chr6 (85-125)||(18252772-18252812)
[»] chr3 (10 HSPs)
chr3 (83-144)||(25892456-25892517)
chr3 (84-188)||(25074786-25074890)
chr3 (95-141)||(1830351-1830397)
chr3 (94-141)||(21149074-21149121)
chr3 (94-181)||(21211295-21211382)
chr3 (94-144)||(3730167-3730217)
chr3 (94-147)||(12704656-12704709)
chr3 (94-147)||(52369782-52369835)
chr3 (46-146)||(24205041-24205141)
chr3 (50-114)||(26665099-26665163)
[»] chr8 (9 HSPs)
chr8 (85-147)||(40063949-40064011)
chr8 (44-125)||(7658420-7658501)
chr8 (42-125)||(24362223-24362306)
chr8 (93-144)||(28883880-28883931)
chr8 (65-143)||(3911088-3911166)
chr8 (84-125)||(4786359-4786400)
chr8 (94-123)||(33382042-33382071)
chr8 (94-146)||(35431140-35431192)
chr8 (94-146)||(39820436-39820488)
[»] chr2 (12 HSPs)
chr2 (94-147)||(25544488-25544541)
chr2 (90-125)||(4229429-4229464)
chr2 (84-143)||(10535762-10535821)
chr2 (84-147)||(19573975-19574038)
chr2 (97-147)||(11308003-11308053)
chr2 (65-147)||(24011015-24011096)
chr2 (94-140)||(31026702-31026748)
chr2 (94-147)||(23354651-23354704)
chr2 (94-146)||(12748691-12748743)
chr2 (94-122)||(12933760-12933788)
chr2 (94-122)||(16630802-16630830)
chr2 (85-125)||(17776585-17776625)
[»] scaffold0778 (1 HSPs)
scaffold0778 (94-142)||(4413-4461)
[»] chr7 (6 HSPs)
chr7 (94-146)||(12278842-12278894)
chr7 (97-188)||(7133236-7133327)
chr7 (94-180)||(38804521-38804607)
chr7 (94-147)||(17780083-17780136)
chr7 (98-147)||(23930230-23930279)
chr7 (94-147)||(29812663-29812716)
[»] scaffold0598 (1 HSPs)
scaffold0598 (94-149)||(8050-8105)
[»] chr1 (3 HSPs)
chr1 (94-123)||(29415755-29415784)
chr1 (94-147)||(42004946-42004999)
chr1 (65-125)||(5376521-5376581)


Alignment Details
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 53968460 - 53968660
Alignment:
Q  1 cataggggctctaaacatgtgggaactataaaacacgaacgagatacagacacggacataggatacgacacaaacaccaacaagccgataccaataataa 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  53968460 cataggggctctaaacatgtgggaactatgaaacacgaacgagatacagacacggacacaggatacgacacaaacaccaacacgccgataccaataataa 53968559  T
Q  101 tttaagaaaatgacataattcagtgatatcatagatgtcgtgtcggttttcgaaaccaacgtgtgtccgaaaccgggacacacttaattgaaggagcgta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  53968560 tttaagaaaatgacataattcagtgatatcatagatgtcgtgtcggtttccgaaaccaacgtgtgtccaaaaccaggacacacttaattgaaggagcgta 53968659  T
Q  201 t 201  Q
    |    
T  53968660 t 53968660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 46 - 181
Target Start/End: Original strand, 24343466 - 24343601
Alignment:
Q  46 acagacacggacataggatacgacacaaacaccaacaagccgataccaataataatttaagaaaatgacataattcagtgatatcatagatgtcgtgtcg 145  Q
    |||||||||||||  ||| |||||||  || || ||| ||||| ||  |||||||||| ||||||| |||||||||||||  || |||| ||||||||||    
T  24343466 acagacacggacaccggacacgacacggacgccgacacgccgacacggataataatttgagaaaattacataattcagtgtaattataggtgtcgtgtcg 24343565  T
Q  146 gttttcgaaaccaacgtgtgtccgaaaccgggacac 181  Q
    || | ||| ||| ||| |||||||| ||||||||||    
T  24343566 gtgtccgacaccgacgcgtgtccgacaccgggacac 24343601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 20743330 - 20743277
Alignment:
Q  94 ataataatttaagaaaatgacataattcagtgatatcatagatgtcgtgtcggt 147  Q
    |||||||||| |||||||||||||||||||||  ||||||| ||| ||||||||    
T  20743330 ataataatttgagaaaatgacataattcagtgtaatcataggtgttgtgtcggt 20743277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 31243600 - 31243547
Alignment:
Q  94 ataataatttaagaaaatgacataattcagtgatatcatagatgtcgtgtcggt 147  Q
    |||||||||| |||||||||||||||||||||  ||||||| |||| |||||||    
T  31243600 ataataatttgagaaaatgacataattcagtgtaatcataggtgtcatgtcggt 31243547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 134
Target Start/End: Original strand, 7012053 - 7012113
Alignment:
Q  74 acaccaacaagccgataccaataataatttaagaaaatgacataattcagtgatatcatag 134  Q
    ||||| ||| ||||| ||| |||||||||| |||||||||||||||||||||  |||||||    
T  7012053 acaccgacacgccgacaccgataataatttgagaaaatgacataattcagtgtgatcatag 7012113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 122
Target Start/End: Complemental strand, 25390946 - 25390910
Alignment:
Q  86 cgataccaataataatttaagaaaatgacataattca 122  Q
    |||||||||||||||||| ||||||||||||||||||    
T  25390946 cgataccaataataattttagaaaatgacataattca 25390910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 36386272 - 36386232
Alignment:
Q  85 ccgataccaataataatttaagaaaatgacataattcagtg 125  Q
    ||||||||||||||||||| |||||| ||||||||||||||    
T  36386272 ccgataccaataataatttgagaaaaggacataattcagtg 36386232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 168
Target Start/End: Complemental strand, 3144704 - 3144630
Alignment:
Q  94 ataataatttaagaaaatgacataattcagtgatatcatagatgtcgtgtcggttttcgaaaccaacgtgtgtcc 168  Q
    |||||||||| ||||||||| |||||| ||||  ||||||| |||||||||||| |  || ||||||| ||||||    
T  3144704 ataataatttcagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtcagacaccaacgcgtgtcc 3144630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 188
Target Start/End: Original strand, 21137697 - 21137788
Alignment:
Q  95 taataatttaagaaaatgacataattcagtgatatcatagatgtcgtgtcggttttcgaaaccaacgtgtgtccgaaaccgggacacacttaat 188  Q
    ||||||| | |||||||||| ||||||||||| ||||||| ||||||||||||    || ||||||| |||||||| |||||||||||| ||||    
T  21137697 taataatctgagaaaatgacgtaattcagtgaaatcataggtgtcgtgtcggtcg--gacaccaacgcgtgtccgacaccgggacacacctaat 21137788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 188
Target Start/End: Complemental strand, 26205820 - 26205718
Alignment:
Q  86 cgataccaataataatttaagaaaatgacataattcagtgatatcatagatgtcgtgtcggttttcgaaaccaacgtgtgtccgaaaccgggacacactt 185  Q
    ||||||| |||| | ||| |||||||||||||||||||||  ||||||| |||||||| ||| |  || ||||||| || ||||| |||||||||||| |    
T  26205820 cgataccgataaaattttgagaaaatgacataattcagtgtaatcataggtgtcgtgttggtgtcggacaccaacgcgtatccgacaccgggacacacgt 26205721  T
Q  186 aat 188  Q
    |||    
T  26205720 aat 26205718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 125
Target Start/End: Complemental strand, 19293504 - 19293444
Alignment:
Q  65 acgacacaaacaccaacaagccgataccaataataatttaagaaaatgacataattcagtg 125  Q
    |||||||| ||||||||| || || |||||||||||||||||||||| |||||||| ||||    
T  19293504 acgacacagacaccaacacgctgacaccaataataatttaagaaaataacataattaagtg 19293444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 125
Target Start/End: Original strand, 18162062 - 18162093
Alignment:
Q  94 ataataatttaagaaaatgacataattcagtg 125  Q
    ||||||||||||||||||||||||||||||||    
T  18162062 ataataatttaagaaaatgacataattcagtg 18162093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 31264446 - 31264495
Alignment:
Q  95 taataatttaagaaaatgacataattcagtgatatcatagatgtcgtgtc 144  Q
    ||||||||| |||||||||||||||||||||  ||||||  |||||||||    
T  31264446 taataatttgagaaaatgacataattcagtgtaatcataagtgtcgtgtc 31264495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 43554528 - 43554581
Alignment:
Q  94 ataataatttaagaaaatgacataattcagtgatatcatagatgtcgtgtcggt 147  Q
    |||||||||| ||||||||| |||||| ||||  ||||||| ||||||||||||    
T  43554528 ataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggt 43554581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 122
Target Start/End: Complemental strand, 11596515 - 11596479
Alignment:
Q  86 cgataccaataataatttaagaaaatgacataattca 122  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  11596515 cgataccgataataatttgagaaaatgacataattca 11596479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 122
Target Start/End: Complemental strand, 23287405 - 23287373
Alignment:
Q  90 accaataataatttaagaaaatgacataattca 122  Q
    ||||||||||||||| |||||||||||||||||    
T  23287405 accaataataatttaggaaaatgacataattca 23287373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 34446572 - 34446625
Alignment:
Q  94 ataataatttaagaaaatgacataattcagtgatatcatagatgtcgtgtcggt 147  Q
    |||||||||| |||||||||||||||||||||  ||||||| ||||||||||||    
T  34446572 ataataatttgagaaaatgacataattcagtgtaatcataggtgtcgtgtcggt 34446625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 119
Target Start/End: Original strand, 25096380 - 25096455
Alignment:
Q  44 atacagacacggacataggatacgacacaaacaccaacaagccgataccaataataatttaagaaaatgacataat 119  Q
    |||| ||||||||||| |||||| ||||| ||||| ||| | ||| |||| ||||||||| ||||||| |||||||    
T  25096380 atacggacacggacatcggatacaacacagacaccgacacgacgacaccactaataatttgagaaaatcacataat 25096455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 12235571 - 12235521
Alignment:
Q  94 ataataatttaagaaaatgacataattcagtgatatcatagatgtcgtgtc 144  Q
    |||||||||  |||||||||||||||||||||  ||||||| |||||||||    
T  12235571 ataataattagagaaaatgacataattcagtgtaatcataggtgtcgtgtc 12235521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 6389750 - 6389803
Alignment:
Q  94 ataataatttaagaaaatgacataattcagtgatatcatagatgtcgtgtcggt 147  Q
    |||||||||| ||||||||| |||||| ||||  ||||||| ||||||||||||    
T  6389750 ataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggt 6389803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 4859188 - 4859140
Alignment:
Q  71 caaacaccaacaagccgataccaataataatttaagaaaatgacataat 119  Q
    ||||||| |||| | ||| |||||||||||||| |||||||||||||||    
T  4859188 caaacactaacatgtcgacaccaataataatttgagaaaatgacataat 4859140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 120
Target Start/End: Original strand, 7625083 - 7625155
Alignment:
Q  48 agacacggacataggatacgacacaaacaccaacaagccgataccaataataatttaagaaaatgacataatt 120  Q
    |||||||||||| ||| |||||||| ||||| ||| | ||| ||  |||||||||| ||||||||| ||||||    
T  7625083 agacacggacatcggacacgacacagacaccgacacgtcgacacggataataatttgagaaaatgatataatt 7625155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 146
Target Start/End: Complemental strand, 12086397 - 12086345
Alignment:
Q  94 ataataatttaagaaaatgacataattcagtgatatcatagatgtcgtgtcgg 146  Q
    |||||||||| ||| ||||||||||||||||   ||||||| |||||||||||    
T  12086397 ataataatttgagataatgacataattcagtttaatcataggtgtcgtgtcgg 12086345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 18252812 - 18252772
Alignment:
Q  85 ccgataccaataataatttaagaaaatgacataattcagtg 125  Q
    |||||||| |||||||||||| |||||||||||||| ||||    
T  18252812 ccgataccgataataatttaaaaaaatgacataatttagtg 18252772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 144
Target Start/End: Original strand, 25892456 - 25892517
Alignment:
Q  83 agccgataccaataataatttaagaaaatgacataattcagtgatatcatagatgtcgtgtc 144  Q
    |||||| || ||||||||||||||||||||| |||||||||||  ||||||| |||||||||    
T  25892456 agccgaaacaaataataatttaagaaaatgatataattcagtgtaatcataggtgtcgtgtc 25892517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 188
Target Start/End: Original strand, 25074786 - 25074890
Alignment:
Q  84 gccgataccaataataatttaagaaaatgacataattcagtgatatcatagatgtcgtgtcggttttcgaaaccaacgtgtgtccgaaaccgggacacac 183  Q
    ||||| ||| |||||||||| |||||||||||||||| ||||  |||||||  || |||||||| |  || ||||||| |||||||| || |||||||||    
T  25074786 gccgacaccgataataatttgagaaaatgacataattgagtgtaatcataggcgttgtgtcggtgtctgacaccaacgcgtgtccgacactgggacacac 25074885  T
Q  184 ttaat 188  Q
     ||||    
T  25074886 ctaat 25074890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 95 - 141
Target Start/End: Original strand, 1830351 - 1830397
Alignment:
Q  95 taataatttaagaaaatgacataattcagtgatatcatagatgtcgt 141  Q
    |||||||||||||||||||||||||||||||  ||||||| ||||||    
T  1830351 taataatttaagaaaatgacataattcagtgtaatcataggtgtcgt 1830397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 141
Target Start/End: Original strand, 21149074 - 21149121
Alignment:
Q  94 ataataatttaagaaaatgacataattcagtgatatcatagatgtcgt 141  Q
    |||||||||| |||||||||||||||||||||  |||| |||||||||    
T  21149074 ataataatttgagaaaatgacataattcagtgtaatcaaagatgtcgt 21149121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 181
Target Start/End: Original strand, 21211295 - 21211382
Alignment:
Q  94 ataataatttaagaaaatgacataattcagtgatatcatagatgtcgtgtcggttttcgaaaccaacgtgtgtccgaaaccgggacac 181  Q
    |||||||||| ||||||| ||||| |||||||  || || | |||||||||||| ||||| ||| ||| |||||||| || |||||||    
T  21211295 ataataatttgagaaaattacatagttcagtgtaattatgggtgtcgtgtcggtgttcgacaccgacgcgtgtccgacactgggacac 21211382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 3730217 - 3730167
Alignment:
Q  94 ataataatttaagaaaatgacataattcagtgatatcatagatgtcgtgtc 144  Q
    |||||||||| ||| |||||||||||||||||  ||||||| |||||||||    
T  3730217 ataataatttgagataatgacataattcagtgtaatcataggtgtcgtgtc 3730167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 12704709 - 12704656
Alignment:
Q  94 ataataatttaagaaaatgacataattcagtgatatcatagatgtcgtgtcggt 147  Q
    |||||||||| | |||||||||||||||| ||  ||||||| ||||||||||||    
T  12704709 ataataatttgaaaaaatgacataattcaatgtaatcataggtgtcgtgtcggt 12704656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 52369782 - 52369835
Alignment:
Q  94 ataataatttaagaaaatgacataattcagtgatatcatagatgtcgtgtcggt 147  Q
    |||||||||| ||||||| |||||||||| ||  ||||||| ||||||||||||    
T  52369782 ataataatttgagaaaattacataattcaatgtaatcataggtgtcgtgtcggt 52369835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 146
Target Start/End: Complemental strand, 24205141 - 24205041
Alignment:
Q  46 acagacacggacataggatacgacacaaacaccaacaagccgataccaataataatttaagaaaatgacataattcagtgatatcatagatgtcgtgtcg 145  Q
    |||||||||||||  ||| |||||||  ||||  ||| ||||| ||  |||||||||| ||||||||||||||| |||||  || |||  ||||||||||    
T  24205141 acagacacggacaccggacacgacacggacactgacacgccgacacggataataatttgagaaaatgacataatacagtgtaattataagtgtcgtgtcg 24205042  T
Q  146 g 146  Q
    |    
T  24205041 g 24205041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 26665099 - 26665163
Alignment:
Q  50 acacggacataggatacgacacaaacaccaacaagccgataccaataataatttaagaaaatgac 114  Q
    |||||||||| |||||| ||||| ||||| | || |||| || ||||||||||| ||||||||||    
T  26665099 acacggacatcggatacaacacagacaccgataaaccgacacaaataataatttgagaaaatgac 26665163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 40063949 - 40064011
Alignment:
Q  85 ccgataccaataataatttaagaaaatgacataattcagtgatatcatagatgtcgtgtcggt 147  Q
    |||| |||||||||||||| |||||||||||||||||| ||  |||||||  |||||||||||    
T  40063949 ccgacaccaataataatttgagaaaatgacataattcattgtaatcataggcgtcgtgtcggt 40064011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 7658420 - 7658501
Alignment:
Q  44 atacagacacggacataggatacgacacaaacaccaacaagccgataccaataataatttaagaaaatgacataattcagtg 125  Q
    |||| ||||||||||| |||||| ||||| ||| | | | ||||| |||| ||||||||| ||||||| |||||||||||||    
T  7658420 atacggacacggacatcggatacaacacagacatcgatacgccgacaccactaataatttgagaaaattacataattcagtg 7658501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 125
Target Start/End: Complemental strand, 24362306 - 24362223
Alignment:
Q  42 agatacagacacggacataggatacgacacaaacaccaacaagccgataccaataataatttaagaaaatgacataattcagtg 125  Q
    |||||| || |||||||  |||||||||||| ||||| ||| ||||| |||  ||||||||| ||| ||| |||||||||||||    
T  24362306 agatacggatacggacaccggatacgacacagacaccgacacgccgacaccgctaataatttgagagaatcacataattcagtg 24362223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 28883931 - 28883880
Alignment:
Q  93 aataataatttaagaaaatgacataattcagtgatatcatagatgtcgtgtc 144  Q
    ||||||||||| |||||||||||||||||||||  ||||||| |||| ||||    
T  28883931 aataataatttgagaaaatgacataattcagtggaatcataggtgtcttgtc 28883880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 143
Target Start/End: Original strand, 3911088 - 3911166
Alignment:
Q  65 acgacacaaacaccaacaagccgataccaataataatttaagaaaatgacataattcagtgatatcatagatgtcgtgt 143  Q
    |||| ||| |||| |||| ||||| | ||||||| |||||| ||||| |||||||||||||| ||||||  ||||||||    
T  3911088 acgatacacacacaaacacgccgacatcaataatcatttaataaaatcacataattcagtgaaatcataagtgtcgtgt 3911166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 84 - 125
Target Start/End: Complemental strand, 4786400 - 4786359
Alignment:
Q  84 gccgataccaataataatttaagaaaatgacataattcagtg 125  Q
    ||||| |||| ||||||||||||||||| |||||||||||||    
T  4786400 gccgacaccattaataatttaagaaaatcacataattcagtg 4786359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 123
Target Start/End: Complemental strand, 33382071 - 33382042
Alignment:
Q  94 ataataatttaagaaaatgacataattcag 123  Q
    ||||||||||||||||||||||||||||||    
T  33382071 ataataatttaagaaaatgacataattcag 33382042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 146
Target Start/End: Complemental strand, 35431192 - 35431140
Alignment:
Q  94 ataataatttaagaaaatgacataattcagtgatatcatagatgtcgtgtcgg 146  Q
    |||||||||| ||||||||||||| || ||||  ||||||| |||||||||||    
T  35431192 ataataatttgagaaaatgacatattttagtgtaatcataggtgtcgtgtcgg 35431140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 39820436 - 39820488
Alignment:
Q  94 ataataatttaagaaaatgacataattcagtgatatcatagatgtcgtgtcgg 146  Q
    |||||||||| ||||||||| |||||| ||||  ||||||| |||||||||||    
T  39820436 ataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcgg 39820488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 25544488 - 25544541
Alignment:
Q  94 ataataatttaagaaaatgacataattcagtgatatcatagatgtcgtgtcggt 147  Q
    |||||||||| ||||||||| |||||||||||  ||||||| ||||||||||||    
T  25544488 ataataatttgagaaaatgatataattcagtgtaatcataggtgtcgtgtcggt 25544541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 4229464 - 4229429
Alignment:
Q  90 accaataataatttaagaaaatgacataattcagtg 125  Q
    |||||||||||||||||| |||||||||||||||||    
T  4229464 accaataataatttaagagaatgacataattcagtg 4229429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 10535821 - 10535762
Alignment:
Q  84 gccgataccaataataatttaagaaaatgacataattcagtgatatcatagatgtcgtgt 143  Q
    ||||| ||| |||||||||| |||||||||||||||||||||  ||||||  ||||||||    
T  10535821 gccgacaccgataataatttgagaaaatgacataattcagtgtaatcataagtgtcgtgt 10535762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 147
Target Start/End: Original strand, 19573975 - 19574038
Alignment:
Q  84 gccgataccaataataatttaagaaaatgacataattcagtgatatcatagatgtcgtgtcggt 147  Q
    ||||| ||| |||||||||||||||||| |||||||||||||  || |||| || |||||||||    
T  19573975 gccgacaccgataataatttaagaaaataacataattcagtgtaattataggtggcgtgtcggt 19574038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 11308053 - 11308003
Alignment:
Q  97 ataatttaagaaaatgacataattcagtgatatcatagatgtcgtgtcggt 147  Q
    ||||||| | |||||||||||||||||||  ||||||| ||||||||||||    
T  11308053 ataatttgaaaaaatgacataattcagtgtaatcataggtgtcgtgtcggt 11308003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 147
Target Start/End: Original strand, 24011015 - 24011096
Alignment:
Q  65 acgacacaaacaccaacaagccgataccaataataatttaagaaaatgacataattcagtgatatcatagatgtcgtgtcggt 147  Q
    |||||||||||||||| | ||||| |   |||||||||| |||||||||||||||| ||||  ||||||| ||||| ||||||    
T  24011015 acgacacaaacaccaa-acgccgacattgataataatttgagaaaatgacataatttagtgtaatcataggtgtcgcgtcggt 24011096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 140
Target Start/End: Original strand, 31026702 - 31026748
Alignment:
Q  94 ataataatttaagaaaatgacataattcagtgatatcatagatgtcg 140  Q
    ||||||||||||||||||||||||||||| ||  |||||| ||||||    
T  31026702 ataataatttaagaaaatgacataattcaatgtaatcatatatgtcg 31026748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 23354704 - 23354651
Alignment:
Q  94 ataataatttaagaaaatgacataattcagtgatatcatagatgtcgtgtcggt 147  Q
    |||||||||| ||||||||| |||||| ||||  ||||||| ||||||||||||    
T  23354704 ataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggt 23354651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 12748691 - 12748743
Alignment:
Q  94 ataataatttaagaaaatgacataattcagtgatatcatagatgtcgtgtcgg 146  Q
    |||||||||| ||||||||||||| |||||||  ||||||| ||| |||||||    
T  12748691 ataataatttgagaaaatgacatagttcagtgtaatcataggtgttgtgtcgg 12748743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 122
Target Start/End: Complemental strand, 12933788 - 12933760
Alignment:
Q  94 ataataatttaagaaaatgacataattca 122  Q
    |||||||||||||||||||||||||||||    
T  12933788 ataataatttaagaaaatgacataattca 12933760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 122
Target Start/End: Original strand, 16630802 - 16630830
Alignment:
Q  94 ataataatttaagaaaatgacataattca 122  Q
    |||||||||||||||||||||||||||||    
T  16630802 ataataatttaagaaaatgacataattca 16630830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 17776585 - 17776625
Alignment:
Q  85 ccgataccaataataatttaagaaaatgacataattcagtg 125  Q
    ||||||||||||||||||||||||||  |||||| ||||||    
T  17776585 ccgataccaataataatttaagaaaaccacataagtcagtg 17776625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0778 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0778
Description:

Target: scaffold0778; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 142
Target Start/End: Original strand, 4413 - 4461
Alignment:
Q  94 ataataatttaagaaaatgacataattcagtgatatcatagatgtcgtg 142  Q
    ||||||||||||||| |||| |||||||||||  |||||||||||||||    
T  4413 ataataatttaagaatatgatataattcagtgtcatcatagatgtcgtg 4461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 12278842 - 12278894
Alignment:
Q  94 ataataatttaagaaaatgacataattcagtgatatcatagatgtcgtgtcgg 146  Q
    ||||||||||||||||||||||||||||||||  || |||  |||||||||||    
T  12278842 ataataatttaagaaaatgacataattcagtgtaattatatgtgtcgtgtcgg 12278894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 188
Target Start/End: Complemental strand, 7133327 - 7133236
Alignment:
Q  97 ataatttaagaaaatgacataattcagtgatatcatagatgtcgtgtcggttttcgaaaccaacgtgtgtccgaaaccgggacacacttaat 188  Q
    ||||||| |||||||||||||||||||||  ||||||| ||  |||||||| |  || ||| ||| |||||||| || ||||||||| ||||    
T  7133327 ataatttgagaaaatgacataattcagtgtaatcataggtggtgtgtcggtgtcggacaccgacgcgtgtccgacactgggacacacctaat 7133236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 180
Target Start/End: Complemental strand, 38804607 - 38804521
Alignment:
Q  94 ataataatttaagaaaatgacataattcagtgatatcatagatgtcgtgtcggttttcgaaaccaacgtgtgtccgaaaccgggaca 180  Q
    |||||||||| ||||||||||||||| ||| |  ||||||| |||||||| ||| |  || ||| ||||||||||||  ||||||||    
T  38804607 ataataatttcagaaaatgacataatccagggtaatcataggtgtcgtgttggtgtcggacaccgacgtgtgtccgacgccgggaca 38804521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 17780136 - 17780083
Alignment:
Q  94 ataataatttaagaaaatgacataattcagtgatatcatagatgtcgtgtcggt 147  Q
    ||||||||||||||||||||||||||||  ||  || |||| ||||||||||||    
T  17780136 ataataatttaagaaaatgacataattctatgtaataataggtgtcgtgtcggt 17780083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 23930230 - 23930279
Alignment:
Q  98 taatttaagaaaatgacataattcagtgatatcatagatgtcgtgtcggt 147  Q
    |||||| |||||||||||||||||||||  ||||||| ||| ||||||||    
T  23930230 taatttgagaaaatgacataattcagtgtaatcataggtgttgtgtcggt 23930279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 29812716 - 29812663
Alignment:
Q  94 ataataatttaagaaaatgacataattcagtgatatcatagatgtcgtgtcggt 147  Q
    |||||||||| ||||||||| |||||| ||||  ||||||| ||||||||||||    
T  29812716 ataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggt 29812663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 149
Target Start/End: Complemental strand, 8105 - 8050
Alignment:
Q  94 ataataatttaagaaaatgacataattcagtgatatcatagatgtcgtgtcggttt 149  Q
    |||||||||| |||||||||||||||||||||  | ||||| | ||||||||||||    
T  8105 ataataatttgagaaaatgacataattcagtgtaaacataggtatcgtgtcggttt 8050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 123
Target Start/End: Original strand, 29415755 - 29415784
Alignment:
Q  94 ataataatttaagaaaatgacataattcag 123  Q
    ||||||||||||||||||||||||||||||    
T  29415755 ataataatttaagaaaatgacataattcag 29415784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 42004999 - 42004946
Alignment:
Q  94 ataataatttaagaaaatgacataattcagtgatatcatagatgtcgtgtcggt 147  Q
    |||||||||| |||||||||||||||| ||||  ||||||| ||| ||||||||    
T  42004999 ataataatttgagaaaatgacataatttagtgtaatcataggtgttgtgtcggt 42004946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 125
Target Start/End: Complemental strand, 5376581 - 5376521
Alignment:
Q  65 acgacacaaacaccaacaagccgataccaataataatttaagaaaatgacataattcagtg 125  Q
    |||||||  |||| |||| ||||| |||  ||||||||||||||||| |||||||||||||    
T  5376581 acgacacggacactaacacgccgacaccgctaataatttaagaaaataacataattcagtg 5376521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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