View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9468_low_35 (Length: 201)

Name: NF9468_low_35
Description: NF9468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9468_low_35
NF9468_low_35
[»] chr7 (23 HSPs)
chr7 (8-201)||(21880183-21880370)
chr7 (113-201)||(33994243-33994331)
chr7 (113-178)||(43027404-43027469)
chr7 (113-195)||(598245-598327)
chr7 (113-178)||(5409771-5409836)
chr7 (112-201)||(40287301-40287385)
chr7 (113-197)||(15680844-15680928)
chr7 (113-197)||(21864843-21864927)
chr7 (113-201)||(24105709-24105797)
chr7 (112-178)||(32093953-32094020)
chr7 (135-201)||(8234177-8234243)
chr7 (113-171)||(29763129-29763187)
chr7 (113-149)||(7328639-7328675)
chr7 (114-201)||(20549822-20549909)
chr7 (114-201)||(22484056-22484143)
chr7 (113-184)||(24339701-24339772)
chr7 (155-201)||(7197279-7197325)
chr7 (113-183)||(7438766-7438836)
chr7 (113-178)||(1433513-1433578)
chr7 (112-201)||(5835278-5835367)
chr7 (113-178)||(9778559-9778624)
chr7 (115-184)||(26033392-26033461)
chr7 (133-201)||(26733335-26733403)
[»] scaffold0050 (1 HSPs)
scaffold0050 (116-201)||(70309-70394)
[»] chr6 (26 HSPs)
chr6 (112-201)||(28152129-28152218)
chr6 (113-193)||(4877982-4878061)
chr6 (113-201)||(34595165-34595253)
chr6 (112-201)||(24645512-24645601)
chr6 (116-197)||(32978842-32978923)
chr6 (115-183)||(5000557-5000625)
chr6 (113-201)||(28715326-28715414)
chr6 (113-197)||(6898221-6898305)
chr6 (113-201)||(10770607-10770702)
chr6 (113-200)||(16833340-16833427)
chr6 (113-201)||(7977770-7977858)
chr6 (113-184)||(3209447-3209518)
chr6 (113-184)||(10339054-10339125)
chr6 (114-197)||(17841530-17841613)
chr6 (115-201)||(7265535-7265621)
chr6 (112-201)||(13360312-13360400)
chr6 (113-184)||(16766756-16766827)
chr6 (113-184)||(18367895-18367966)
chr6 (115-197)||(32298549-32298631)
chr6 (140-197)||(7740676-7740733)
chr6 (113-178)||(17327590-17327655)
chr6 (114-155)||(17341622-17341663)
chr6 (117-178)||(23130405-23130466)
chr6 (113-149)||(8805524-8805560)
chr6 (113-153)||(9911482-9911522)
chr6 (113-201)||(13364645-13364733)
[»] chr1 (27 HSPs)
chr1 (114-201)||(40258874-40258961)
chr1 (113-201)||(38078601-38078689)
chr1 (112-197)||(22515826-22515911)
chr1 (113-201)||(1815288-1815376)
chr1 (113-201)||(18337360-18337448)
chr1 (113-201)||(37598862-37598950)
chr1 (113-201)||(51410056-51410144)
chr1 (115-201)||(42359391-42359477)
chr1 (112-201)||(18190047-18190136)
chr1 (112-197)||(46348322-46348407)
chr1 (113-184)||(9828103-9828174)
chr1 (114-195)||(5927281-5927362)
chr1 (113-201)||(5898206-5898294)
chr1 (112-184)||(47989556-47989628)
chr1 (113-172)||(5944354-5944413)
chr1 (113-172)||(6427535-6427594)
chr1 (115-168)||(17778617-17778670)
chr1 (118-195)||(26830625-26830701)
chr1 (110-178)||(1486641-1486709)
chr1 (115-178)||(16297223-16297286)
chr1 (113-172)||(40917820-40917879)
chr1 (112-150)||(9630560-9630598)
chr1 (114-168)||(26526686-26526740)
chr1 (132-172)||(6427595-6427635)
chr1 (145-193)||(21530728-21530776)
chr1 (113-201)||(43492434-43492522)
chr1 (113-161)||(46940748-46940796)
[»] chr2 (20 HSPs)
chr2 (115-201)||(2438661-2438747)
chr2 (112-197)||(18840952-18841037)
chr2 (113-201)||(30404790-30404878)
chr2 (113-201)||(15972904-15972992)
chr2 (114-199)||(28596502-28596587)
chr2 (116-200)||(21091755-21091839)
chr2 (112-196)||(38117098-38117182)
chr2 (113-201)||(37559008-37559096)
chr2 (112-174)||(15907850-15907912)
chr2 (118-195)||(12224260-12224337)
chr2 (113-153)||(10535685-10535725)
chr2 (113-201)||(20242667-20242755)
chr2 (113-201)||(34993922-34994010)
chr2 (110-197)||(6940290-6940377)
chr2 (113-172)||(26769582-26769641)
chr2 (113-184)||(37419802-37419873)
chr2 (135-201)||(5367223-5367289)
chr2 (121-201)||(5040765-5040845)
chr2 (113-184)||(22084756-22084830)
chr2 (113-181)||(42511322-42511390)
[»] chr4 (35 HSPs)
chr4 (112-201)||(23292925-23293014)
chr4 (112-201)||(28964187-28964276)
chr4 (113-201)||(16073425-16073513)
chr4 (112-201)||(12797277-12797366)
chr4 (114-201)||(3947702-3947794)
chr4 (113-197)||(34306744-34306828)
chr4 (136-201)||(38846975-38847040)
chr4 (113-201)||(715545-715635)
chr4 (113-201)||(752871-752961)
chr4 (113-196)||(12895214-12895297)
chr4 (126-201)||(21945534-21945609)
chr4 (113-172)||(29205528-29205587)
chr4 (135-201)||(8402705-8402770)
chr4 (114-184)||(30982808-30982878)
chr4 (113-170)||(7214466-7214523)
chr4 (112-197)||(35157924-35158009)
chr4 (145-201)||(29205475-29205531)
chr4 (113-201)||(35161067-35161155)
chr4 (113-201)||(42640560-42640643)
chr4 (113-201)||(49431057-49431145)
chr4 (113-184)||(22234819-22234890)
chr4 (113-184)||(36635378-36635449)
chr4 (113-183)||(24613630-24613700)
chr4 (112-201)||(8423657-8423746)
chr4 (112-201)||(40179575-40179664)
chr4 (113-178)||(47264051-47264116)
chr4 (126-197)||(4157471-4157542)
chr4 (113-172)||(19482739-19482798)
chr4 (113-184)||(23861369-23861440)
chr4 (155-197)||(4157184-4157226)
chr4 (118-184)||(30838269-30838335)
chr4 (156-201)||(54580006-54580051)
chr4 (113-197)||(2361915-2361999)
chr4 (113-161)||(18513175-18513223)
chr4 (113-149)||(28470448-28470484)
[»] chr3 (21 HSPs)
chr3 (113-201)||(20503496-20503584)
chr3 (113-201)||(40993275-40993363)
chr3 (113-197)||(55401110-55401194)
chr3 (115-201)||(25775540-25775624)
chr3 (120-201)||(3631715-3631796)
chr3 (113-178)||(27505305-27505370)
chr3 (113-201)||(26492145-26492233)
chr3 (128-201)||(10954983-10955056)
chr3 (113-178)||(28812580-28812645)
chr3 (115-201)||(28918032-28918120)
chr3 (113-201)||(7171532-7171620)
chr3 (113-161)||(40052383-40052431)
chr3 (114-161)||(1389909-1389956)
chr3 (113-196)||(8842365-8842448)
chr3 (114-201)||(8789489-8789578)
chr3 (115-172)||(4987222-4987279)
chr3 (115-184)||(8412889-8412958)
chr3 (168-197)||(10268481-10268510)
chr3 (112-201)||(23657770-23657859)
chr3 (112-161)||(34185051-34185100)
chr3 (157-201)||(3865705-3865749)
[»] chr8 (21 HSPs)
chr8 (135-201)||(31557027-31557093)
chr8 (113-201)||(36450694-36450782)
chr8 (113-201)||(18407750-18407838)
chr8 (115-200)||(926730-926815)
chr8 (116-201)||(40332222-40332307)
chr8 (113-201)||(14134730-14134818)
chr8 (113-197)||(33405324-33405408)
chr8 (121-195)||(126295-126369)
chr8 (115-201)||(3025582-3025668)
chr8 (167-201)||(22204672-22204706)
chr8 (113-178)||(8343381-8343446)
chr8 (115-200)||(20679337-20679422)
chr8 (113-177)||(11944731-11944795)
chr8 (113-185)||(29510233-29510305)
chr8 (113-184)||(22652035-22652106)
chr8 (113-184)||(29447503-29447574)
chr8 (151-197)||(20873104-20873150)
chr8 (113-178)||(12570438-12570503)
chr8 (113-178)||(12570664-12570729)
chr8 (114-183)||(29447040-29447109)
chr8 (113-201)||(24413499-24413587)
[»] scaffold0652 (1 HSPs)
scaffold0652 (114-201)||(403-490)
[»] chr5 (19 HSPs)
chr5 (115-201)||(21190998-21191084)
chr5 (115-201)||(30502330-30502416)
chr5 (115-201)||(30542673-30542759)
chr5 (113-198)||(42893394-42893479)
chr5 (113-201)||(21576685-21576773)
chr5 (113-201)||(27932266-27932354)
chr5 (113-201)||(28588614-28588702)
chr5 (113-197)||(43564916-43565000)
chr5 (112-182)||(30098387-30098457)
chr5 (113-178)||(31084382-31084447)
chr5 (113-161)||(2436982-2437030)
chr5 (117-201)||(4105290-4105374)
chr5 (113-184)||(7677764-7677835)
chr5 (126-172)||(15382545-15382591)
chr5 (163-201)||(15884019-15884057)
chr5 (110-184)||(39698600-39698674)
chr5 (115-184)||(19579760-19579829)
chr5 (112-172)||(17123108-17123167)
chr5 (113-201)||(21194063-21194151)
[»] scaffold0083 (1 HSPs)
scaffold0083 (113-201)||(45470-45558)
[»] scaffold0053 (1 HSPs)
scaffold0053 (113-197)||(8833-8917)
[»] scaffold0793 (1 HSPs)
scaffold0793 (113-201)||(4821-4911)
[»] scaffold0512 (1 HSPs)
scaffold0512 (113-195)||(4976-5058)
[»] scaffold0008 (1 HSPs)
scaffold0008 (115-184)||(263303-263372)
[»] scaffold0475 (1 HSPs)
scaffold0475 (113-197)||(3343-3427)
[»] scaffold0004 (1 HSPs)
scaffold0004 (114-178)||(92876-92940)
[»] scaffold0361 (1 HSPs)
scaffold0361 (113-201)||(14561-14646)
[»] scaffold0022 (1 HSPs)
scaffold0022 (111-201)||(90874-90964)
[»] scaffold0122 (1 HSPs)
scaffold0122 (113-198)||(8044-8128)
[»] scaffold0003 (1 HSPs)
scaffold0003 (113-178)||(241659-241724)
[»] scaffold0136 (1 HSPs)
scaffold0136 (113-178)||(3778-3843)
[»] scaffold0020 (1 HSPs)
scaffold0020 (112-161)||(135262-135311)
[»] scaffold0697 (1 HSPs)
scaffold0697 (145-193)||(1683-1731)
[»] scaffold0057 (1 HSPs)
scaffold0057 (113-149)||(24119-24155)
[»] scaffold0018 (1 HSPs)
scaffold0018 (173-201)||(178818-178846)


Alignment Details
Target: chr7 (Bit Score: 123; Significance: 2e-63; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 8 - 201
Target Start/End: Complemental strand, 21880370 - 21880183
Alignment:
Q  8 agggaccaaaaattgtggttcaattttttgtagtgatgaagcttgaaacatccgtaattctaaaaacatattcaaccctatttctgataaaccttgacta 107  Q
    ||||||| || |||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  21880370 agggaccgaatattgtggttcaattttttatagcgacgaagcttgaaacatccgtaattctaaaaacatattcaaccctatttctgataaaccttgact- 21880272  T
Q  108 attgactatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
         |||||||||||| |||||  ||||||||||| ||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||    
T  21880271 -----ctatgaagcacggacacttctcggattaggcgtgtcctggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacactgaat 21880183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 113 - 201
Target Start/End: Complemental strand, 33994331 - 33994243
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    ||||||| ||||||||||| | ||||||||| ||||  ||| | |||||||||||||||||||||| ||||||||||||| ||||||||    
T  33994331 ctatgaaacacgaacactccttggattaggcgtgtctcggtgttggacatgtgtcgtgtctgacaccgacacttgtaattgcactgaat 33994243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 113 - 178
Target Start/End: Original strand, 43027404 - 43027469
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacac 178  Q
    |||||||||||| |||||||||||||||||| ||||| ||| ||||||| ||||||||||||||||    
T  43027404 ctatgaagcacggacactcatcggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacac 43027469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 113 - 195
Target Start/End: Complemental strand, 598327 - 598245
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattaca 195  Q
    |||||||||||| |||||  ||||||||||| ||||| ||| ||||||| |||||||||||||||| |||||||  |||||||    
T  598327 ctatgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgacacttacaattaca 598245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 178
Target Start/End: Original strand, 5409771 - 5409836
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacac 178  Q
    |||||||||||| |||||| ||||||||||| ||||| ||| ||||||| |||||||||| |||||    
T  5409771 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacac 5409836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 201
Target Start/End: Original strand, 40287301 - 40287385
Alignment:
Q  112 actatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||| |||||||| |||||| ||||||||||||||||| ||| |||||||||||||      || || ||||||||||||||||||||||    
T  40287301 actacgaagcacggacactcctcggattaggcatgtcccggtgtcggacatgtgtcc-----gataccgacacttgtaattacactgaat 40287385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 113 - 197
Target Start/End: Complemental strand, 15680928 - 15680844
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacact 197  Q
    |||||||||||| |||||| ||| ||||| | ||||  ||| ||||||| |||||||||| ||||| ||||||| ||||||||||    
T  15680928 ctatgaagcacggacactcctcgaattagacgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttataattacact 15680844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 113 - 197
Target Start/End: Complemental strand, 21864927 - 21864843
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacact 197  Q
    |||||||||||  |||||| ||| ||||| | ||||| ||| ||||||| |||||||||| ||||  ||||||||||||||||||    
T  21864927 ctatgaagcacagacactcctcgaattagacgtgtcccggtgtcggacacgtgtcgtgtccgacagcgacacttgtaattacact 21864843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 113 - 201
Target Start/End: Complemental strand, 24105797 - 24105709
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    ||||||||||| ||||||| |||| |||||| ||||| ||| |||||||  ||| ||| | ||| | ||||||||||||||||||||||    
T  24105797 ctatgaagcacaaacactcctcgggttaggcgtgtcccggtgtcggacacatgttgtgcccgactccgacacttgtaattacactgaat 24105709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 178
Target Start/End: Original strand, 32093953 - 32094020
Alignment:
Q  112 actatgaagcacgaacactcatcggattaggcatgt-cctggtatcggacatgtgtcgtgtctgacac 178  Q
    |||||||||||||||||||| ||||||||||| ||| || ||| ||||||| |||||||||| |||||    
T  32093953 actatgaagcacgaacactcctcggattaggcgtgtccccggtgtcggacacgtgtcgtgtccgacac 32094020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 8234243 - 8234177
Alignment:
Q  135 ggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    ||||||||| ||||  ||| |||||||||||||||||| ||||| | ||||||||| ||||||||||    
T  8234243 ggattaggcgtgtctcggtgtcggacatgtgtcgtgtccgacaccggcacttgtaactacactgaat 8234177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 113 - 171
Target Start/End: Original strand, 29763129 - 29763187
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgt 171  Q
    |||||||||||| |||||| ||||||||||| ||||||| | ||||||| |||||||||    
T  29763129 ctatgaagcacggacactcctcggattaggcgtgtcctgatgtcggacacgtgtcgtgt 29763187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 149
Target Start/End: Original strand, 7328639 - 7328675
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcc 149  Q
    ||||||||||||||||||||||||||||||| |||||    
T  7328639 ctatgaagcacgaacactcatcggattaggcgtgtcc 7328675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 114 - 201
Target Start/End: Complemental strand, 20549909 - 20549822
Alignment:
Q  114 tatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||||||||||  ||||| ||||||||||| ||||    | |||||||||||| ||||| ||||| ||||| | ||||||||||||||    
T  20549909 tatgaagcacgggcactcctcggattaggcgtgtctcattgtcggacatgtgttgtgtccgacaccgacacatataattacactgaat 20549822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 114 - 201
Target Start/End: Complemental strand, 22484143 - 22484056
Alignment:
Q  114 tatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    ||||||||||| |||||  |||||| || ||||||  | | ||||||||||||| |||||||||| ||||| | |||||| |||||||    
T  22484143 tatgaagcacggacacttctcggatcagacatgtctcgatgtcggacatgtgtcatgtctgacaccgacacatataattatactgaat 22484056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 24339772 - 24339701
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacac 184  Q
    ||||||||||||  ||||| ||||||||||| ||||| ||| ||||| | |||||||||| ||||| |||||    
T  24339772 ctatgaagcacgggcactcctcggattaggcgtgtcccggtgtcggatacgtgtcgtgtccgacaccgacac 24339701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 201
Target Start/End: Original strand, 7197279 - 7197325
Alignment:
Q  155 tcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||||||||||| ||||| ||||| |||||||||||||||| |||||    
T  7197279 tcggacatgtgttgtgtccgacaccgacacttgtaattacattgaat 7197325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 183
Target Start/End: Complemental strand, 7438836 - 7438766
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgaca 183  Q
    |||||||||||| |||||| | | ||||||| |||||| || ||| ||||||||||||| |||||| ||||    
T  7438836 ctatgaagcacggacactccttgaattaggcgtgtcctagtgtcgcacatgtgtcgtgtttgacaccgaca 7438766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 178
Target Start/End: Complemental strand, 1433578 - 1433513
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacac 178  Q
    |||||||||||| |||||| ||||||||| | ||||||||| |||||||  |||| |||| |||||    
T  1433578 ctatgaagcacggacactcctcggattagacgtgtcctggtgtcggacacatgtcttgtccgacac 1433513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 201
Target Start/End: Complemental strand, 5835367 - 5835278
Alignment:
Q  112 actatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    ||||| |||||  ||||||  |||||||| || ||||| |||||| ||||  |||| |||||||||| ||||| | ||||||||||||||    
T  5835367 actataaagcaaaaacacttctcggattaagcgtgtcccggtatcagacacatgtcatgtctgacaccgacacatataattacactgaat 5835278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 178
Target Start/End: Complemental strand, 9778624 - 9778559
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacac 178  Q
    |||||||||||| |||||| | ||||||||| ||||| ||| ||||||| |||| ||||| |||||    
T  9778624 ctatgaagcacggacactccttggattaggcgtgtcccggtgtcggacacgtgttgtgtccgacac 9778559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 26033392 - 26033461
Alignment:
Q  115 atgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacac 184  Q
    ||||| |||| |||||| ||||||||||  ||||  ||||||||||| ||||| |||||||||| |||||    
T  26033392 atgaaacacggacactcctcggattaggtgtgtcgcggtatcggacacgtgtcatgtctgacaccgacac 26033461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 26733403 - 26733335
Alignment:
Q  133 tcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    ||||||||||| ||| |  |||||||||||| |||||||| ||||| ||||| | |||||| |||||||    
T  26733403 tcggattaggcgtgttcccgtatcggacatgcgtcgtgtccgacaccgacacatttaattagactgaat 26733335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 116 - 201
Target Start/End: Complemental strand, 70394 - 70309
Alignment:
Q  116 tgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||| ||||||| ||||||||||||||    
T  70394 tgaagcacgaacactcatcggattaggcatgtcctggtgtcggacacgtgtcgtgtccgacaccgacacttataattacactgaat 70309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 5e-27; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 112 - 201
Target Start/End: Complemental strand, 28152218 - 28152129
Alignment:
Q  112 actatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||||||||||||||||||| ||||||||||| ||||| ||| ||||||| |||||||||| ||||| ||||||||||||||||||||||    
T  28152218 actatgaagcacgaacactcctcggattaggcctgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactgaat 28152129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 113 - 193
Target Start/End: Complemental strand, 4878061 - 4877982
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaatta 193  Q
    |||||||||||| |||||| ||||||||||| ||||||| | |||||||||||||||||| ||||| ||||||||||||||    
T  4878061 ctatgaagcacggacactcctcggattaggcgtgtcctg-tgtcggacatgtgtcgtgtccgacaccgacacttgtaatta 4877982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 113 - 201
Target Start/End: Complemental strand, 34595253 - 34595165
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||||||||||| |||||| ||||||||||  ||||| ||| || |||| |||||||||| ||||| ||||||||||||||||||||||    
T  34595253 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcagacacgtgtcgtgtccgacaccgacacttgtaattacactgaat 34595165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 112 - 201
Target Start/End: Complemental strand, 24645601 - 24645512
Alignment:
Q  112 actatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    ||||||||||||  |||||| ||||||||| | |||| |||| ||||||| |||||||||||||||| ||||||||||| || |||||||    
T  24645601 actatgaagcacagacactcttcggattagacgtgtcttggtgtcggacacgtgtcgtgtctgacaccgacacttgtaactatactgaat 24645512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 197
Target Start/End: Original strand, 32978842 - 32978923
Alignment:
Q  116 tgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacact 197  Q
    ||||||||| |||||| | ||||||| | ||||| ||| |||||||||||||||||| ||||| ||||||||||||||||||    
T  32978842 tgaagcacggacactccttggattagacgtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacact 32978923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 115 - 183
Target Start/End: Original strand, 5000557 - 5000625
Alignment:
Q  115 atgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgaca 183  Q
    ||||||||||||||||| ||||||||| | ||||||||| ||||| |||||||||||||||||| ||||    
T  5000557 atgaagcacgaacactcttcggattagacgtgtcctggtgtcggatatgtgtcgtgtctgacaccgaca 5000625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 113 - 201
Target Start/End: Complemental strand, 28715414 - 28715326
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||||||||||| |||||  ||| ||||||| ||||| ||| ||| ||| |||||||||| ||||| ||||||||||||||||||||||    
T  28715414 ctatgaagcacgtacacttctcgaattaggcgtgtcccggtgtcgaacacgtgtcgtgtccgacaccgacacttgtaattacactgaat 28715326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 197
Target Start/End: Original strand, 6898221 - 6898305
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacact 197  Q
    ||||||||||||||||||||||||||||||| |||   ||| | ||||| |  ||||||| ||||| ||||||||||||||||||    
T  6898221 ctatgaagcacgaacactcatcggattaggcgtgtttcggtgttggacacgcttcgtgtccgacaccgacacttgtaattacact 6898305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 10770607 - 10770702
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggaca--tgtgtcgtgtctgacact-----gacacttgtaattacactgaat 201  Q
    |||||||||||| |||||| || |||||||||||||| || ||||||||  |||||||||||||||||      ||||||||||||||||||||||    
T  10770607 ctatgaagcacggacactcctcagattaggcatgtcccggcatcggacacgtgtgtcgtgtctgacacgacaccgacacttgtaattacactgaat 10770702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 113 - 200
Target Start/End: Complemental strand, 16833427 - 16833340
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaa 200  Q
    |||||||| ||  |||||| ||||||| ||  ||||||||| ||||||  ||||||||||| |||| |||||||||||||||||||||    
T  16833427 ctatgaagtacagacactcctcggattcggtgtgtcctggtgtcggacgcgtgtcgtgtctaacaccgacacttgtaattacactgaa 16833340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 7977770 - 7977858
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    ||||||||||||||||||| |  |||||||| |||   | | |||||||| ||| ||||| ||||| ||||||||||||||||||||||    
T  7977770 ctatgaagcacgaacactccttagattaggcgtgtttcgttgtcggacatatgttgtgtccgacaccgacacttgtaattacactgaat 7977858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 3209518 - 3209447
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacac 184  Q
    ||||||||||| ||||||| ||||||||||| ||||| ||| ||||||  |||||||||  |||||||||||    
T  3209518 ctatgaagcacaaacactcctcggattaggcgtgtccgggtgtcggacgcgtgtcgtgttcgacactgacac 3209447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 10339054 - 10339125
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacac 184  Q
    |||||||||||| |||||| || |||||||| |||||  || |||||||||||||||||| ||||| |||||    
T  10339054 ctatgaagcacggacactcctccgattaggcgtgtcccagtgtcggacatgtgtcgtgtccgacaccgacac 10339125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 17841530 - 17841613
Alignment:
Q  114 tatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacact 197  Q
    ||||||||||| |||||| ||||||||||| ||||   || |||||||  ||||||||| ||||| | ||||||||||||||||    
T  17841530 tatgaagcacggacactcctcggattaggcgtgtctcagtgtcggacacatgtcgtgtccgacaccgtcacttgtaattacact 17841613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 115 - 201
Target Start/End: Original strand, 7265535 - 7265621
Alignment:
Q  115 atgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||||||||| || ||| ||||||||||||| | | ||| |||||||||| | ||||| ||||| ||||| | ||||||||||||||    
T  7265535 atgaagcacggacgctcctcggattaggcatattccggtgtcggacatgtattgtgtccgacaccgacacatataattacactgaat 7265621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 201
Target Start/End: Original strand, 13360312 - 13360400
Alignment:
Q  112 actatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    ||||||||||||| |||||| ||||||||||| ||||   || |||||||| ||| ||||||||||| || || | ||||||||||||||    
T  13360312 actatgaagcacggacactcttcggattaggcgtgtctcagtgtcggacat-tgttgtgtctgacaccgaaacatataattacactgaat 13360400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 16766827 - 16766756
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacac 184  Q
    |||||||||||| ||| || ||||||||||| ||||| ||| ||||||| |||| ||||| ||||| |||||    
T  16766827 ctatgaagcacggacattcttcggattaggcgtgtcccggtgtcggacacgtgttgtgtccgacaccgacac 16766756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 18367966 - 18367895
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacac 184  Q
    |||||||||||| |||||| | |||| |||| |||||  || || ||||||||||||||||||||| |||||    
T  18367966 ctatgaagcacggacactccttggataaggcgtgtccccgtgtcagacatgtgtcgtgtctgacaccgacac 18367895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 197
Target Start/End: Original strand, 32298549 - 32298631
Alignment:
Q  115 atgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacact 197  Q
    |||||||| |||||||||||  ||||||| ||| ||||| | |||||| |||| ||||||||||  |||| | ||||||||||    
T  32298549 atgaagcatgaacactcatcaaattaggcgtgttctggtgttggacatatgtcatgtctgacaccaacacatataattacact 32298631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 197
Target Start/End: Complemental strand, 7740733 - 7740676
Alignment:
Q  140 aggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacact 197  Q
    |||| ||||||||||||||  | |||||||||| ||||||||||| | ||||||||||    
T  7740733 aggcgtgtcctggtatcgggtacgtgtcgtgtccgacactgacacatataattacact 7740676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 178
Target Start/End: Original strand, 17327590 - 17327655
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacac 178  Q
    |||||||||||| |||||| ||||||||||| |||||  || || |||| |||||||||| |||||    
T  17327590 ctatgaagcacggacactcctcggattaggcgtgtccctgtgtcagacacgtgtcgtgtccgacac 17327655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 155
Target Start/End: Original strand, 17341622 - 17341663
Alignment:
Q  114 tatgaagcacgaacactcatcggattaggcatgtcctggtat 155  Q
    |||||||||| ||||||| ||||||||||| |||||||||||    
T  17341622 tatgaagcacaaacactcctcggattaggcgtgtcctggtat 17341663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 23130405 - 23130466
Alignment:
Q  117 gaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacac 178  Q
    |||||||  |||||| || |||||||||||||| | |||| |||| ||||||||||||||||    
T  23130405 gaagcacatacactcctcagattaggcatgtcccgatatcagacacgtgtcgtgtctgacac 23130466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 149
Target Start/End: Original strand, 8805524 - 8805560
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcc 149  Q
    |||||||||||| |||||| |||||||||||||||||    
T  8805524 ctatgaagcacggacactcctcggattaggcatgtcc 8805560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 153
Target Start/End: Original strand, 9911482 - 9911522
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggt 153  Q
    |||||||||| |||||||| ||||||||||| |||||||||    
T  9911482 ctatgaagcatgaacactcctcggattaggcgtgtcctggt 9911522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 13364645 - 13364733
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||||||||||  |||||| ||||| ||| | ||||||||| || ||||||| |||||||  |||| ||||| | | ||||||||||||    
T  13364645 ctatgaagcacagacactcgtcggaatagacgtgtcctggtgtcagacatgtatcgtgtccaacaccgacacatatgattacactgaat 13364733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 8e-26; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 114 - 201
Target Start/End: Original strand, 40258874 - 40258961
Alignment:
Q  114 tatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    ||||||||| | |||||| ||||||||||| ||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||    
T  40258874 tatgaagcatggacactcctcggattaggcgtgtcctggtgtcggacaggtgtcgtgtctgacaccgacacttgtaattacactgaat 40258961  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 38078601 - 38078689
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||||||||||||| |||| ||||||||||| ||||||||| | | |||||||||||||| ||||| |||||||||||||||| |||||    
T  38078601 ctatgaagcacgaatactcctcggattaggcgtgtcctggtgttgaacatgtgtcgtgtccgacaccgacacttgtaattacattgaat 38078689  T

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Target: chr1; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 112 - 197
Target Start/End: Original strand, 22515826 - 22515911
Alignment:
Q  112 actatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacact 197  Q
    ||||||||||||| |||||| ||||||||||| ||||  ||| ||||| |||||||||||| ||||| ||||||||||||||||||    
T  22515826 actatgaagcacggacactcctcggattaggcgtgtctcggtgtcggatatgtgtcgtgtccgacaccgacacttgtaattacact 22515911  T

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Target: chr1; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 113 - 201
Target Start/End: Complemental strand, 1815376 - 1815288
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    ||||||| ||||  ||||| || |||||||| ||||| ||| |||||||||||||||||| ||||| ||||||||||||||||||||||    
T  1815376 ctatgaatcacggtcactcctcagattaggcgtgtcccggtgtcggacatgtgtcgtgtcggacaccgacacttgtaattacactgaat 1815288  T

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Target: chr1; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 113 - 201
Target Start/End: Complemental strand, 18337448 - 18337360
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||||||||||| |||||| |||||| ||||||||||  || ||||||| |||| ||||| ||||| ||||||||||||||||||||||    
T  18337448 ctatgaagcacggacactcctcggatcaggcatgtcccagtgtcggacacgtgttgtgtccgacaccgacacttgtaattacactgaat 18337360  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 113 - 201
Target Start/End: Complemental strand, 37598950 - 37598862
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||||||||||| |||||| ||||||||||| |||||   | ||||||| |||||||||| ||||| ||||||| ||||||||||||||    
T  37598950 ctatgaagcacggacactcctcggattaggcgtgtcccattgtcggacacgtgtcgtgtccgacaccgacacttataattacactgaat 37598862  T

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Target: chr1; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 113 - 201
Target Start/End: Complemental strand, 51410144 - 51410056
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||||||||||||| |||| | ||||||||| ||||  ||| ||||| | |||||||||| ||||| ||||||||||||||||||||||    
T  51410144 ctatgaagcacgaatactccttggattaggcgtgtctcggtgtcggatacgtgtcgtgtccgacaccgacacttgtaattacactgaat 51410056  T

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Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 201
Target Start/End: Original strand, 42359391 - 42359477
Alignment:
Q  115 atgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||||||||| |||||| ||||||||||| ||||| ||| |||||||   ||| |||| ||||| ||||||||||||||||||||||    
T  42359391 atgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacacgtcttgtccgacaccgacacttgtaattacactgaat 42359477  T

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Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 112 - 201
Target Start/End: Original strand, 18190047 - 18190136
Alignment:
Q  112 actatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||||||||| |  |||||| ||||||||||  ||||| ||| ||||||| |||| ||||||||||  ||||||||||||||||||||||    
T  18190047 actatgaagcgcatacactcctcggattaggtgtgtcccggtgtcggacacgtgttgtgtctgacatcgacacttgtaattacactgaat 18190136  T

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Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 112 - 197
Target Start/End: Original strand, 46348322 - 46348407
Alignment:
Q  112 actatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacact 197  Q
    ||||||||||||| |||| | |||||| |||| ||||  ||| ||||||| |||||||||| ||||| ||||||||||||||||||    
T  46348322 actatgaagcacggacacacctcggatcaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacact 46348407  T

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Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 9828174 - 9828103
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacac 184  Q
    |||||||||||| |||||| ||||||||| | ||||| ||| ||||||| |||||||||||||||| |||||    
T  9828174 ctatgaagcacggacactcctcggattagacgtgtcccggtgtcggacacgtgtcgtgtctgacacggacac 9828103  T

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Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 195
Target Start/End: Original strand, 5927281 - 5927362
Alignment:
Q  114 tatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattaca 195  Q
    ||||||||||| |||||| || ||||||||||||   | | |||||||| |||| |||| ||||||||||||||||||||||    
T  5927281 tatgaagcacggacactcctcagattaggcatgtttcgatgtcggacatttgtcatgtccgacactgacacttgtaattaca 5927362  T

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Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 5898206 - 5898294
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||| ||||||| |||||| ||||||||| | ||||| ||| | ||||| |||||||||||||||| ||| | | ||||||||||||||    
T  5898206 ctataaagcacggacactcctcggattagacgtgtcccggtgttggacacgtgtcgtgtctgacaccgacgcatataattacactgaat 5898294  T

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Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 112 - 184
Target Start/End: Complemental strand, 47989628 - 47989556
Alignment:
Q  112 actatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacac 184  Q
    ||||||||||||| |||||| ||||||||||| ||||| | | || ||||||||||||||| ||||| |||||    
T  47989628 actatgaagcacggacactcctcggattaggcgtgtcccgatgtcagacatgtgtcgtgtccgacaccgacac 47989556  T

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Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 172
Target Start/End: Complemental strand, 5944413 - 5944354
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtc 172  Q
    ||||||||||||||||||| ||||||||||| | ||| ||| |||||||||||| |||||    
T  5944413 ctatgaagcacgaacactcctcggattaggcgtatcccggtgtcggacatgtgttgtgtc 5944354  T

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Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 172
Target Start/End: Complemental strand, 6427594 - 6427535
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtc 172  Q
    |||||||||||| ||||||||| |||||||| ||||| ||| ||||||| ||||||||||    
T  6427594 ctatgaagcacggacactcatcagattaggcgtgtcccggtgtcggacacgtgtcgtgtc 6427535  T

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Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 17778670 - 17778617
Alignment:
Q  115 atgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcg 168  Q
    ||||||||||||||||  ||||||||||||||||| ||| ||||||| ||||||    
T  17778670 atgaagcacgaacacttctcggattaggcatgtcccggtgtcggacacgtgtcg 17778617  T

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Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 195
Target Start/End: Complemental strand, 26830701 - 26830625
Alignment:
Q  118 aagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattaca 195  Q
    ||||||| |||||| || |||||||| ||||| ||||||| ||| |||| ||||||||||| ||||||| ||||||||    
T  26830701 aagcacggacactcctctgattaggcgtgtcccggtatcgaacacgtgtagtgtctgacac-gacacttataattaca 26830625  T

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Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 178
Target Start/End: Original strand, 1486641 - 1486709
Alignment:
Q  110 tgactatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacac 178  Q
    |||| |||||||||  |||||| ||||||||||| ||||| ||| ||||||| |||||||||| |||||    
T  1486641 tgaccatgaagcacagacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacac 1486709  T

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Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 115 - 178
Target Start/End: Original strand, 16297223 - 16297286
Alignment:
Q  115 atgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacac 178  Q
    |||||||||| |||||| ||||||||||| ||||||||| |||||||   |||||||| |||||    
T  16297223 atgaagcacggacactcctcggattaggcgtgtcctggtgtcggacacacgtcgtgtccgacac 16297286  T

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Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 172
Target Start/End: Complemental strand, 40917879 - 40917820
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtc 172  Q
    |||||||||||| ||| || ||||||||||| ||||| ||| ||||||| ||||||||||    
T  40917879 ctatgaagcacggacagtcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtc 40917820  T

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Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 150
Target Start/End: Original strand, 9630560 - 9630598
Alignment:
Q  112 actatgaagcacgaacactcatcggattaggcatgtcct 150  Q
    |||||||||||||||||||| ||||||||||| ||||||    
T  9630560 actatgaagcacgaacactcctcggattaggcgtgtcct 9630598  T

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Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 168
Target Start/End: Original strand, 26526686 - 26526740
Alignment:
Q  114 tatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcg 168  Q
    |||||||||||||||||||||| || || | ||||||| ||||||||||| ||||    
T  26526686 tatgaagcacgaacactcatcgaatcagacgtgtcctgatatcggacatgagtcg 26526740  T

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Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 6427635 - 6427595
Alignment:
Q  132 atcggattaggcatgtcctggtatcggacatgtgtcgtgtc 172  Q
    |||||||||||| ||||| ||||||||||| ||||||||||    
T  6427635 atcggattaggcgtgtcccggtatcggacacgtgtcgtgtc 6427595  T

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Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 21530776 - 21530728
Alignment:
Q  145 tgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaatta 193  Q
    |||||| || |||||||||||||||||| ||||| ||||||| ||||||    
T  21530776 tgtcctagtgtcggacatgtgtcgtgtccgacaccgacacttataatta 21530728  T

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Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 43492434 - 43492522
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||||||||||  |  ||| ||||||||||| ||| | ||| |||||||||||| ||||||||||| |||||   ||||||||| ||||    
T  43492434 ctatgaagcacatatgctcttcggattaggcgtgtgccggtgtcggacatgtgttgtgtctgacaccgacacacataattacaccgaat 43492522  T

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Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 46940748 - 46940796
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggaca 161  Q
    ||||||||||||||||||| ||||||||||| ||| | ||| |||||||    
T  46940748 ctatgaagcacgaacactcctcggattaggcgtgttccggtgtcggaca 46940796  T

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Target: chr2 (Bit Score: 59; Significance: 3e-25; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 115 - 201
Target Start/End: Original strand, 2438661 - 2438747
Alignment:
Q  115 atgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||||||||| |||||| ||||||||||| ||||| ||| |||||||||||||||||| ||||| ||||||||||||||||||||||    
T  2438661 atgaagcacggacactcctcggattaggcgtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacactgaat 2438747  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 112 - 197
Target Start/End: Original strand, 18840952 - 18841037
Alignment:
Q  112 actatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacact 197  Q
    ||||||||||||| |||||| ||||||||||  ||||| ||| |||||||||||||||||||||||| ||||||||||||||||||    
T  18840952 actatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacatgtgtcgtgtctgacaccgacacttgtaattacact 18841037  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 30404790 - 30404878
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    ||||||||||| ||| ||  || |||||||||||||||||| |||||||||||||||||| ||| | ||||||||||||||||||||||    
T  30404790 ctatgaagcacaaacgcttctcagattaggcatgtcctggtgtcggacatgtgtcgtgtccgacgccgacacttgtaattacactgaat 30404878  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 113 - 201
Target Start/End: Complemental strand, 15972992 - 15972904
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||||||||||| ||| || ||||||||||  ||||| ||  ||||||| |||||||||| ||||| ||||||||||||||||||||||    
T  15972992 ctatgaagcacggacattcttcggattaggtgtgtcccggcgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactgaat 15972904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 114 - 199
Target Start/End: Complemental strand, 28596587 - 28596502
Alignment:
Q  114 tatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactga 199  Q
    ||||||||||| |||||| ||||||||||  |||||  || ||||||| |||||||||| ||||| ||||||| ||||||||||||    
T  28596587 tatgaagcacggacactcctcggattaggagtgtccgagtgtcggacacgtgtcgtgtccgacaccgacacttataattacactga 28596502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 200
Target Start/End: Complemental strand, 21091839 - 21091755
Alignment:
Q  116 tgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaa 200  Q
    ||||||||| |||||| ||||| ||||  ||||| ||| || |||| ||| | ||||||||||||||||||||||||||||||||    
T  21091839 tgaagcacggacactcttcggaataggtgtgtcccggtgtccgacaggtggcttgtctgacactgacacttgtaattacactgaa 21091755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 196
Target Start/End: Original strand, 38117098 - 38117182
Alignment:
Q  112 actatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacac 196  Q
    ||||||||||||| |||| | ||||||||||| ||||| ||| ||||||| |||| ||||| |||||  ||||||||||||||||    
T  38117098 actatgaagcacggacacccctcggattaggcgtgtcccggtgtcggacacgtgttgtgtccgacaccaacacttgtaattacac 38117182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 113 - 201
Target Start/End: Complemental strand, 37559096 - 37559008
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||||||||||| |||||| |||||||| || ||| | ||| ||||||| |||||  ||| ||||| |||||||||||||||| |||||    
T  37559096 ctatgaagcacggacactcctcggattaagcgtgtaccggtgtcggacacgtgtcaagtccgacaccgacacttgtaattacattgaat 37559008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 15907850 - 15907912
Alignment:
Q  112 actatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctg 174  Q
    ||||||||||||| ||||||||| |||| ||| ||||| ||| ||||| ||||||||||||||    
T  15907850 actatgaagcacggacactcatcagattgggcgtgtcccggtgtcggatatgtgtcgtgtctg 15907912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 195
Target Start/End: Complemental strand, 12224337 - 12224260
Alignment:
Q  118 aagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattaca 195  Q
    |||||| ||||||| | ||||||||| |||||  || ||||||| || ||||||| ||||| ||||||||||||||||    
T  12224337 aagcacaaacactccttggattaggcgtgtcccagtgtcggacacgtatcgtgtccgacaccgacacttgtaattaca 12224260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 153
Target Start/End: Original strand, 10535685 - 10535725
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggt 153  Q
    ||||||||||||||||||| ||||||||||| |||||||||    
T  10535685 ctatgaagcacgaacactcctcggattaggcgtgtcctggt 10535725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 20242667 - 20242755
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||||||||||  |||||| |||||| |||| |||||| || || |||| |||| ||||| ||||| ||||| | ||||||||||||||    
T  20242667 ctatgaagcacagacactcttcggataaggcgtgtcctcgtgtcagacacgtgttgtgtccgacaccgacacatataattacactgaat 20242755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 34993922 - 34994010
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    ||||||||||||||||||| | | ||||||| |||||  || |||||||  ||||||||  ||||||||||| | |||||||| |||||    
T  34993922 ctatgaagcacgaacactccttgaattaggcgtgtcccagtgtcggacacatgtcgtgttcgacactgacacatataattacattgaat 34994010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 110 - 197
Target Start/End: Complemental strand, 6940377 - 6940290
Alignment:
Q  110 tgactatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacact 197  Q
    |||||| |||||||| ||| ||||  |||||||  |||| |||| | ||||| |||||||||| || || ||||||||||||||||||    
T  6940377 tgactacgaagcacggacaatcatttgattaggtgtgtcttggtgttggacacgtgtcgtgtcggataccgacacttgtaattacact 6940290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 172
Target Start/End: Complemental strand, 26769641 - 26769582
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtc 172  Q
    |||||||||||| |||||| ||||||||||| |||||  || ||||||| ||||||||||    
T  26769641 ctatgaagcacggacactcctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtc 26769582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 37419873 - 37419802
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacac 184  Q
    |||||||||||| |||||| ||||||||||| ||||| ||| ||||||| |  ||||||| ||||| |||||    
T  37419873 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgcatcgtgtccgacaccgacac 37419802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 5367289 - 5367223
Alignment:
Q  135 ggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    ||||||||| ||||| ||  ||||| |||||||||||| ||||| ||||| | ||||||||||||||    
T  5367289 ggattaggcgtgtcccggagtcggatatgtgtcgtgtccgacaccgacacatataattacactgaat 5367223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 201
Target Start/End: Complemental strand, 5040845 - 5040765
Alignment:
Q  121 cacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||| |||||| | ||| ||||| ||||| ||  |||||||  ||||||||| ||||| |||||||||||||||| |||||    
T  5040845 cacggacactccttggactaggcgtgtcccggcgtcggacacatgtcgtgtccgacaccgacacttgtaattacattgaat 5040765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 22084756 - 22084830
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcc---tggtatcggacatgtgtcgtgtctgacactgacac 184  Q
    |||||||||||  |||||||||||||||||| |||||   |||| || |||| |||| ||||| |||||||||||    
T  22084756 ctatgaagcacagacactcatcggattaggcgtgtcccggtggtgtcagacacgtgttgtgtccgacactgacac 22084830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 181
Target Start/End: Original strand, 42511322 - 42511390
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactga 181  Q
    |||||||||||| |||||| ||||||||| | |||||  || ||||||| |||| ||||| ||||||||    
T  42511322 ctatgaagcacggacactcctcggattagccgtgtccctgtgtcggacacgtgttgtgtccgacactga 42511390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 3e-22; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 112 - 201
Target Start/End: Original strand, 23292925 - 23293014
Alignment:
Q  112 actatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    ||||||||||||| |||||| ||||||||||| ||||| ||| ||||||| |||||||||| ||||| |||||||||||||| |||||||    
T  23292925 actatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattatactgaat 23293014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 112 - 201
Target Start/End: Original strand, 28964187 - 28964276
Alignment:
Q  112 actatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    ||||||||||| | |||||| ||||||||||| |||||  || ||||| |||||||||||| ||||| ||||||||||||||||||||||    
T  28964187 actatgaagcatggacactcctcggattaggcgtgtcccagtgtcggatatgtgtcgtgtccgacacagacacttgtaattacactgaat 28964276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 113 - 201
Target Start/End: Complemental strand, 16073513 - 16073425
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||||||||| | |||||| ||||||||||| |||| | || |||||||||| ||||||| ||||| ||||||||||||||||||||||    
T  16073513 ctatgaagcatggacactcctcggattaggcgtgtcttagtgtcggacatgtatcgtgtccgacaccgacacttgtaattacactgaat 16073425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 112 - 201
Target Start/End: Original strand, 12797277 - 12797366
Alignment:
Q  112 actatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||| |||||||||||| || ||||||||| | ||||| ||| || ||||||| ||||||| ||||| ||||||||||||||||||||||    
T  12797277 actacgaagcacgaacattcctcggattagacttgtcccggtgtcagacatgtatcgtgtccgacaccgacacttgtaattacactgaat 12797366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 114 - 201
Target Start/End: Original strand, 3947702 - 3947794
Alignment:
Q  114 tatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtc-----tgacactgacacttgtaattacactgaat 201  Q
    ||||||||||| |||||| ||||||||||  ||||||||| ||||||| ||||||||||      ||||||||||||||||||||||||||||    
T  3947702 tatgaagcacggacactcctcggattaggtgtgtcctggtgtcggacacgtgtcgtgtccgacacgacactgacacttgtaattacactgaat 3947794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 113 - 197
Target Start/End: Original strand, 34306744 - 34306828
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacact 197  Q
    |||||||||||||||| || || |||||||| ||||  ||| ||||||| |||||||||| ||||| ||||||||||||||||||    
T  34306744 ctatgaagcacgaacattcctcagattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacact 34306828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 38846975 - 38847040
Alignment:
Q  136 gattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    ||||||| |||| ||||| ||||||| ||||||| || ||||||||||||||||||||||||||||    
T  38846975 gattaggtatgttctggtgtcggacacgtgtcgtatccgacactgacacttgtaattacactgaat 38847040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 715545 - 715635
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgt--ctgacactgacacttgtaattacactgaat 201  Q
    |||||||||||| |||||| ||||||||||| |||||  || |||||||||||||||||    |||||  |||||||||||||||||||||    
T  715545 ctatgaagcacggacactcctcggattaggcgtgtccctgtgtcggacatgtgtcgtgtacaagacaccaacacttgtaattacactgaat 715635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 752871 - 752961
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgt--ctgacactgacacttgtaattacactgaat 201  Q
    |||||||||||| |||||| ||||||||||| |||||  || |||||||||||||||||    |||||  |||||||||||||||||||||    
T  752871 ctatgaagcacggacactcctcggattaggcgtgtccctgtgtcggacatgtgtcgtgtacaagacaccaacacttgtaattacactgaat 752961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 113 - 196
Target Start/End: Original strand, 12895214 - 12895297
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacac 196  Q
    ||||||||||||||||||| ||||||||||| ||||| | | ||||| |  ||||||||| ||||| ||||||| |||||||||    
T  12895214 ctatgaagcacgaacactcctcggattaggcgtgtcccgatgtcggatacatgtcgtgtccgacaccgacacttataattacac 12895297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 126 - 201
Target Start/End: Complemental strand, 21945609 - 21945534
Alignment:
Q  126 acactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||||| ||||||||||| |||   ||| ||||||||||||| |||| ||||| ||||||||||||||||||||||    
T  21945609 acactcctcggattaggcgtgttgcggtgtcggacatgtgtcatgtccgacaccgacacttgtaattacactgaat 21945534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 113 - 172
Target Start/End: Complemental strand, 29205587 - 29205528
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtc 172  Q
    ||||||||||||||||||| ||||||||||| |||||  || ||||||||||||||||||    
T  29205587 ctatgaagcacgaacactcctcggattaggcgtgtcccagtgtcggacatgtgtcgtgtc 29205528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 8402705 - 8402770
Alignment:
Q  135 ggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    ||||||||||||||||| | ||||||| ||||||||||||||||||| || | ||||||||||||||    
T  8402705 ggattaggcatgtcctg-tgtcggacaagtgtcgtgtctgacactgagacatataattacactgaat 8402770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 184
Target Start/End: Original strand, 30982808 - 30982878
Alignment:
Q  114 tatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacac 184  Q
    ||||||||||| |||||| | ||||||||| ||||| ||| ||||||| |||||||||||||||| |||||    
T  30982808 tatgaagcacggacactctttggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgacac 30982878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 170
Target Start/End: Original strand, 7214466 - 7214523
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtg 170  Q
    ||||||||||| |||| |||||||||||||||| ||| ||| ||||||||||||||||    
T  7214466 ctatgaagcacaaacaatcatcggattaggcatttcccggtgtcggacatgtgtcgtg 7214523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 197
Target Start/End: Original strand, 35157924 - 35158009
Alignment:
Q  112 actatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacact 197  Q
    ||||||||||||| |||||  |||||||| || ||| | ||| | |||||||||||||||| ||||| ||||||| ||||||||||    
T  35157924 actatgaagcacggacacttctcggattaagcgtgttccggtgttggacatgtgtcgtgtcagacaccgacacttataattacact 35158009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 29205531 - 29205475
Alignment:
Q  145 tgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    ||||| ||| ||||||||||||||||||  |||| ||||||||||||||||||||||    
T  29205531 tgtcccggtgtcggacatgtgtcgtgtccaacaccgacacttgtaattacactgaat 29205475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 113 - 201
Target Start/End: Complemental strand, 35161155 - 35161067
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||||||||||| |||||  ||||||||||  ||| | ||| ||||||| |||||||||| ||| |||| |||| ||||||||||||||    
T  35161155 ctatgaagcacggacacttttcggattaggtgtgttccggtgtcggacacgtgtcgtgtccgactctgatacttataattacactgaat 35161067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 113 - 201
Target Start/End: Complemental strand, 42640643 - 42640560
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||||||||||| | |||| ||||||||||| |||||||||  ||||||     |||||| ||||| ||||||||||||||||||||||    
T  42640643 ctatgaagcacggaaactcctcggattaggcgtgtcctggtgccggaca-----cgtgtccgacaccgacacttgtaattacactgaat 42640560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 113 - 201
Target Start/End: Complemental strand, 49431145 - 49431057
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||| ||||| | |||||| |||||| |||| ||||| ||| | ||||| |||||||||| ||||| ||||||| ||||||||||||||    
T  49431145 ctataaagcatggacactcctcggataaggcgtgtcccggtgttggacacgtgtcgtgtccgacaccgacacttttaattacactgaat 49431057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 22234819 - 22234890
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacac 184  Q
    ||||||||||||||||||  |||||||||   ||||||||| ||||||| |||||||||| ||||| |||||    
T  22234819 ctatgaagcacgaacacttctcggattagctgtgtcctggtgtcggacacgtgtcgtgtcagacaccgacac 22234890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 36635449 - 36635378
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacac 184  Q
    |||||||||||| |||||| ||||||||||| ||||| ||| || |||  ||||||||||||||||| ||||    
T  36635449 ctatgaagcacggacactcttcggattaggcgtgtcccggtgtctgacgcgtgtcgtgtctgacactcacac 36635378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 113 - 183
Target Start/End: Original strand, 24613630 - 24613700
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgaca 183  Q
    |||||||||||| |||||| | ||||||| | ||||||||| || |||| |||||||||||||||| ||||    
T  24613630 ctatgaagcacggacactcctaggattagacgtgtcctggtgtcagacacgtgtcgtgtctgacaccgaca 24613700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 201
Target Start/End: Original strand, 8423657 - 8423746
Alignment:
Q  112 actatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    ||||||| ||||| |||||  || |||||||| ||||| ||| |||||||  ||||||||| ||||| |||| || ||||||||||||||    
T  8423657 actatgacgcacggacacttctccgattaggcgtgtcccggtgtcggacagctgtcgtgtccgacaccgacatttataattacactgaat 8423746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 201
Target Start/End: Original strand, 40179575 - 40179664
Alignment:
Q  112 actatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    ||||| ||||||||| | |  ||||||||||| |||| |||| ||| |||||||||||||| ||||| ||| | | ||||||||||||||    
T  40179575 actatcaagcacgaataattctcggattaggcgtgtcatggtgtcgaacatgtgtcgtgtccgacaccgacgcatataattacactgaat 40179664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 178
Target Start/End: Complemental strand, 47264116 - 47264051
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacac 178  Q
    |||||||||||  || ||| ||||||||||| ||||||||| || |||||||||||| ||||||||    
T  47264116 ctatgaagcacagacgctcttcggattaggcgtgtcctggtgtcagacatgtgtcgtatctgacac 47264051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 126 - 197
Target Start/End: Complemental strand, 4157542 - 4157471
Alignment:
Q  126 acactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacact 197  Q
    |||||| ||| ||||||| | ||  ||| |||||||||||||||||| ||||| ||||||||||||| ||||    
T  4157542 acactcctcgaattaggcgtttctcggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattgcact 4157471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 172
Target Start/End: Complemental strand, 19482798 - 19482739
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtc 172  Q
    ||||||||||||||||||| ||||||||||  |||||  || ||||||| ||||||||||    
T  19482798 ctatgaagcacgaacactcctcggattaggtgtgtcccagtgtcggacacgtgtcgtgtc 19482739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 23861369 - 23861440
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacac 184  Q
    ||||||||||||||||||| | | ||||||| |||| ||||  | |||||||||||| |||||||| |||||    
T  23861369 ctatgaagcacgaacactctttgaattaggcgtgtcttggtgacagacatgtgtcgtatctgacaccgacac 23861440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 197
Target Start/End: Complemental strand, 4157226 - 4157184
Alignment:
Q  155 tcggacatgtgtcgtgtctgacactgacacttgtaattacact 197  Q
    |||||||||||||||||| ||||| ||||||||||||| ||||    
T  4157226 tcggacatgtgtcgtgtccgacaccgacacttgtaattgcact 4157184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 30838335 - 30838269
Alignment:
Q  118 aagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacac 184  Q
    ||||||| |||||| |||| |||||| |||| |||| ||||||| |||||| ||| |||||||||||    
T  30838335 aagcacggacactcctcgggttaggcgtgtcttggtgtcggacacgtgtcgcgtccgacactgacac 30838269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 54580006 - 54580051
Alignment:
Q  156 cggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||||| |||||||||| ||||| ||||||| ||||||||||||||    
T  54580006 cggacacgtgtcgtgtccgacaccgacacttataattacactgaat 54580051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 197
Target Start/End: Original strand, 2361915 - 2361999
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacact 197  Q
    |||||||||||| |||||| || |||||||  ||||  ||| || |||| | |||||||| ||||| ||||||| ||||||||||    
T  2361915 ctatgaagcacggacactcgtcagattaggtgtgtctcggtgtcagacacgagtcgtgtccgacaccgacacttttaattacact 2361999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 18513175 - 18513223
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggaca 161  Q
    |||||||||||| |||||| || |||||||| ||||||||| |||||||    
T  18513175 ctatgaagcacggacactcctcagattaggcgtgtcctggtgtcggaca 18513223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 149
Target Start/End: Complemental strand, 28470484 - 28470448
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcc 149  Q
    |||||||||||| |||||| |||||||||||||||||    
T  28470484 ctatgaagcacggacactcctcggattaggcatgtcc 28470448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 113 - 201
Target Start/End: Complemental strand, 20503584 - 20503496
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||||||||||| |||||| ||||||||||| ||||| ||| || |||||||||||||||  |||| ||||||||||||||||||||||    
T  20503584 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcagacatgtgtcgtgtccaacaccgacacttgtaattacactgaat 20503496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 40993275 - 40993363
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||||||||| | |||||| ||||||||||| ||||| ||| |||||||||||||||||| ||||| ||||| | ||||||||||||||    
T  40993275 ctatgaagcatggacactcctcggattaggcgtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaat 40993363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 113 - 197
Target Start/End: Complemental strand, 55401194 - 55401110
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacact 197  Q
    |||||||||||| |||||| ||||||||||| ||||  ||| ||||||| |||||||||| ||||| ||||||||||||||||||    
T  55401194 ctatgaagcacggacactcctcggattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacact 55401110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 115 - 201
Target Start/End: Complemental strand, 25775624 - 25775540
Alignment:
Q  115 atgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    ||||||||||||||||| ||||||||||| ||||||||| |||||||   | |||||| ||||| ||||||||||||||||||||||    
T  25775624 atgaagcacgaacactcctcggattaggcgtgtcctggtgtcggaca--cgacgtgtccgacaccgacacttgtaattacactgaat 25775540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 3631796 - 3631715
Alignment:
Q  120 gcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    ||||| |||||| ||||| ||||| ||||||||| |||||||||||||||||| ||||||| ||| | ||||||||||||||    
T  3631796 gcacggacactcctcggactaggcgtgtcctggtgtcggacatgtgtcgtgtccgacactggcacatataattacactgaat 3631715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 113 - 178
Target Start/End: Complemental strand, 27505370 - 27505305
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacac 178  Q
    |||||||||||| |||||| ||||||||||||||||| ||| ||||||| |||||||||| |||||    
T  27505370 ctatgaagcacggacactcctcggattaggcatgtcccggtgtcggacacgtgtcgtgtcagacac 27505305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 26492145 - 26492233
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    ||||||||| || ||| || ||||||||| | |||| |||| || ||||||||||||||| ||||| || |||||||||||||||||||    
T  26492145 ctatgaagcgcggacattcctcggattagacgtgtcttggtgtcagacatgtgtcgtgtccgacaccgatacttgtaattacactgaat 26492233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 201
Target Start/End: Complemental strand, 10955056 - 10954983
Alignment:
Q  128 actcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||| ||||||||||| |||||  || ||||||| |||||||||| ||||| ||||||||| ||||||||||||    
T  10955056 actcctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgacaccgacacttgtgattacactgaat 10954983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 178
Target Start/End: Complemental strand, 28812645 - 28812580
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacac 178  Q
    |||||| ||||  |||||| ||||||||||| ||||||| | |||||||||| |||||||||||||    
T  28812645 ctatgaggcacagacactcctcggattaggcgtgtcctgctgtcggacatgtatcgtgtctgacac 28812580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 201
Target Start/End: Complemental strand, 28918120 - 28918032
Alignment:
Q  115 atgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtct--gacactgacacttgtaattacactgaat 201  Q
    |||||||| | |||||| | ||||||||| |||||  || ||||||| ||||||||||   ||||| ||||||||||||||||||||||    
T  28918120 atgaagcagggacactccttggattaggcgtgtcccagtgtcggacacgtgtcgtgtccacgacaccgacacttgtaattacactgaat 28918032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 201
Target Start/End: Complemental strand, 7171620 - 7171532
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    ||||||||||   |||||| | ||||||||| ||||  ||| ||||||| |||||||||| |||||  |||||||||||||||| ||||    
T  7171620 ctatgaagcatatacactccttggattaggcgtgtcgcggtgtcggacacgtgtcgtgtccgacaccaacacttgtaattacaccgaat 7171532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 40052431 - 40052383
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggaca 161  Q
    ||||||||||||||||||| ||||||||||| ||||| ||| |||||||    
T  40052431 ctatgaagcacgaacactcctcggattaggcgtgtcccggtgtcggaca 40052383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 114 - 161
Target Start/End: Complemental strand, 1389956 - 1389909
Alignment:
Q  114 tatgaagcacgaacactcatcggattaggcatgtcctggtatcggaca 161  Q
    ||||||||||| |||||| | ||||||||||||||||||| |||||||    
T  1389956 tatgaagcacggacactccttggattaggcatgtcctggtgtcggaca 1389909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 196
Target Start/End: Complemental strand, 8842448 - 8842365
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacac 196  Q
    |||||||||||| |||||| ||||||||||| ||||    ||||  |||||||||||||||||||| ||||  | |||||||||    
T  8842448 ctatgaagcacggacactcctcggattaggcgtgtctcaatatctaacatgtgtcgtgtctgacaccgacatatataattacac 8842365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 201
Target Start/End: Original strand, 8789489 - 8789578
Alignment:
Q  114 tatgaagcacgaacactcatcggattaggcatgtcctggtatcggaca--tgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    ||||||||||| |||||| ||||||||||| ||||  ||| || ||||  ||||||||||| ||||| ||||| | ||||||||| ||||    
T  8789489 tatgaagcacggacactcctcggattaggcgtgtctcggtgtccgacatgtgtgtcgtgtccgacaccgacacatataattacacggaat 8789578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 4987222 - 4987279
Alignment:
Q  115 atgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtc 172  Q
    |||||| ||| |||||| ||||||||||| ||||| ||| ||||||| ||||||||||    
T  4987222 atgaagtacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtc 4987279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 8412889 - 8412958
Alignment:
Q  115 atgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacac 184  Q
    ||||||||| |||| || | |||||||||||||| |||| |||||||| ||||||| | ||||| |||||    
T  8412889 atgaagcacaaacattccttggattaggcatgtcttggtgtcggacatttgtcgtggccgacacggacac 8412958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 168 - 197
Target Start/End: Original strand, 10268481 - 10268510
Alignment:
Q  168 gtgtctgacactgacacttgtaattacact 197  Q
    ||||||||||||||||||||||||||||||    
T  10268481 gtgtctgacactgacacttgtaattacact 10268510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 201
Target Start/End: Complemental strand, 23657859 - 23657770
Alignment:
Q  112 actatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    ||||||||| ||| |||||  ||||||||||  ||||| |||||||||||  |||| |||| ||||| || | || ||||||||||||||    
T  23657859 actatgaagtacggacacttttcggattaggtgtgtcccggtatcggacaaatgtcatgtccgacaccgatatttataattacactgaat 23657770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 34185051 - 34185100
Alignment:
Q  112 actatgaagcacgaacactcatcggattaggcatgtcctggtatcggaca 161  Q
    ||||||||||||| |||||| ||||||||||| ||||| ||| |||||||    
T  34185051 actatgaagcacggacactcctcggattaggcgtgtcccggtgtcggaca 34185100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 3865749 - 3865705
Alignment:
Q  157 ggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    ||||| |||||||||| ||||| |||||||||||||| |||||||    
T  3865749 ggacacgtgtcgtgtcagacaccgacacttgtaattatactgaat 3865705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 31557093 - 31557027
Alignment:
Q  135 ggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    ||||||||| ||||||||| |||||||||||||||||||||||| || |||||||||||||||||||    
T  31557093 ggattaggcgtgtcctggtgtcggacatgtgtcgtgtctgacaccgaaacttgtaattacactgaat 31557027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 36450694 - 36450782
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||||||||||  |||||| ||||||||||| ||||||||| ||||||| | |||||||| |||||  |||||||||||||||||||||    
T  36450694 ctatgaagcacagacactcctcggattaggcgtgtcctggtgtcggacacgcgtcgtgtccgacacctacacttgtaattacactgaat 36450782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 113 - 201
Target Start/End: Complemental strand, 18407838 - 18407750
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||||||||||| |||||| ||  ||||||| |||||| || |||||||||||||||||| | ||  ||||||||||||||||||||||    
T  18407838 ctatgaagcacggacactcctccaattaggcgtgtcctagtgtcggacatgtgtcgtgtccggcagcgacacttgtaattacactgaat 18407750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 115 - 200
Target Start/End: Original strand, 926730 - 926815
Alignment:
Q  115 atgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaa 200  Q
    |||||||||| |||||| |||||| | |||||||| ||| ||||||| |||||| ||| ||||| ||||||| |||||||||||||    
T  926730 atgaagcacggacactcctcggataaagcatgtcccggtgtcggacacgtgtcgcgtccgacaccgacacttataattacactgaa 926815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 201
Target Start/End: Complemental strand, 40332307 - 40332222
Alignment:
Q  116 tgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||| |||| |||||| |||||||||||  |||| ||| | ||||| ||||||||||  |||| ||||||||||||||||||||||    
T  40332307 tgaaacacggacactcctcggattaggcgcgtcccggtgtgggacacgtgtcgtgtcccacaccgacacttgtaattacactgaat 40332222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 113 - 201
Target Start/End: Complemental strand, 14134818 - 14134730
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    ||||||| |||| |||||| ||| ||||||| |||||||||  |||||| ||||||||| |||||| ||||  | ||||||||||||||    
T  14134818 ctatgaaacacggacactcctcgaattaggcgtgtcctggtgacggacacgtgtcgtgtttgacaccgacatatataattacactgaat 14134730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 113 - 197
Target Start/End: Original strand, 33405324 - 33405408
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacact 197  Q
    ||||| |||||| |||||||| ||||||| | ||||| ||| || ||||||||||||||| ||||| ||||| | ||||||||||    
T  33405324 ctatggagcacggacactcattggattagccgtgtccaggtgtcagacatgtgtcgtgtccgacaccgacacatataattacact 33405408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 121 - 195
Target Start/End: Original strand, 126295 - 126369
Alignment:
Q  121 cacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattaca 195  Q
    |||| |||||| ||||||||| | ||||| ||||| ||||| |||||||||| ||||||||||| | ||||||||    
T  126295 cacggacactcctcggattagccgtgtcccggtattggacacgtgtcgtgtccgacactgacacatataattaca 126369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 115 - 201
Target Start/End: Complemental strand, 3025668 - 3025582
Alignment:
Q  115 atgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||||||||| |||||| ||||||||| | ||||   || || |||| |||||||||| ||||||||||| | ||||||||||||||    
T  3025668 atgaagcacggacactcctcggattagccgtgtcacagtgtcagacacgtgtcgtgtccgacactgacacctataattacactgaat 3025582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 167 - 201
Target Start/End: Complemental strand, 22204706 - 22204672
Alignment:
Q  167 cgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||||||||||||||||||||||||||||||||||    
T  22204706 cgtgtctgacactgacacttgtaattacactgaat 22204672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 178
Target Start/End: Complemental strand, 8343446 - 8343381
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacac 178  Q
    |||||||||||  |||||| ||||||||||| ||||| ||| ||||||| |||||||||| |||||    
T  8343446 ctatgaagcacagacactcttcggattaggcgtgtcccggtgtcggacacgtgtcgtgtcggacac 8343381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 200
Target Start/End: Original strand, 20679337 - 20679422
Alignment:
Q  115 atgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaa 200  Q
    |||||||| | |||||| |||| | |||| ||||| ||| ||||||| |||| | ||||||||| ||||||| |||||||||||||    
T  20679337 atgaagcatggacactcctcggttaaggcgtgtcccggtgtcggacacgtgttgcgtctgacaccgacacttataattacactgaa 20679422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 177
Target Start/End: Complemental strand, 11944795 - 11944731
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgaca 177  Q
    ||||||||||||||||||||||||||||||| ||||  ||| ||||| |  |||||||| |||||    
T  11944795 ctatgaagcacgaacactcatcggattaggcgtgtctcggtgtcggatacatgtcgtgtatgaca 11944731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 185
Target Start/End: Original strand, 29510233 - 29510305
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacact 185  Q
    |||||||||||| |||||| ||||||||||  ||||| ||| ||||||| | |||||||| ||||| ||||||    
T  29510233 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacgcgtcgtgtccgacaccgacact 29510305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 22652106 - 22652035
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacac 184  Q
    |||||||||||| |||||| ||||||||| | ||||| ||| |||||||  ||||||||| ||||| |||||    
T  22652106 ctatgaagcacggacactcctcggattagacgtgtcccggtgtcggacacatgtcgtgtccgacaccgacac 22652035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 29447574 - 29447503
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacac 184  Q
    |||||||||||| |||||| || |||||| | ||||| ||| |||||||  ||||||||||||||| |||||    
T  29447574 ctatgaagcacggacactcctccgattagacctgtcccggtgtcggacacatgtcgtgtctgacaccgacac 29447503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 197
Target Start/End: Complemental strand, 20873150 - 20873104
Alignment:
Q  151 ggtatcggacatgtgtcgtgtctgacactgacacttgtaattacact 197  Q
    ||||||||||| || ||||||| ||||| ||||||||||||||||||    
T  20873150 ggtatcggacacgtatcgtgtccgacaccgacacttgtaattacact 20873104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 178
Target Start/End: Original strand, 12570438 - 12570503
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacac 178  Q
    |||| ||||||| ||| || || |||||||| ||||||||| ||||||| |||| |||||||||||    
T  12570438 ctataaagcacggacaatcttcagattaggcgtgtcctggtgtcggacacgtgtagtgtctgacac 12570503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 178
Target Start/End: Original strand, 12570664 - 12570729
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacac 178  Q
    |||| ||||||| ||| || || |||||||| ||||||||| ||||||| |||| |||||||||||    
T  12570664 ctataaagcacggacaatcttcagattaggcgtgtcctggtgtcggacacgtgtagtgtctgacac 12570729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 183
Target Start/End: Original strand, 29447040 - 29447109
Alignment:
Q  114 tatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgaca 183  Q
    ||||||||||| |||||| | ||||||||| ||||||||| || ||||  ||||||||| ||||| ||||    
T  29447040 tatgaagcacggacactcctaggattaggcgtgtcctggtgtcagacacatgtcgtgtccgacaccgaca 29447109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 24413499 - 24413587
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||||||||||| |||||  ||||||||| | ||||| | | | ||||| |  ||||||| ||||||||||||| ||||||| ||||||    
T  24413499 ctatgaagcacggacacttctcggattagacgtgtcccgctgttggacacgcatcgtgtccgacactgacacttataattaccctgaat 24413587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 114 - 201
Target Start/End: Original strand, 403 - 490
Alignment:
Q  114 tatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    ||||||||||| |||||| ||||||||||  ||||| ||| ||||||| | |||||||| ||||| ||||||||||||||||||||||    
T  403 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacgcgtcgtgtccgacaccgacacttgtaattacactgaat 490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 115 - 201
Target Start/End: Original strand, 21190998 - 21191084
Alignment:
Q  115 atgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||||||||| |||||| ||||||||||| ||||| ||  ||||||| |||| ||||| ||||| ||||||||||||||||||||||    
T  21190998 atgaagcacggacactcctcggattaggcgtgtcccggagtcggacacgtgttgtgtccgacaccgacacttgtaattacactgaat 21191084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 115 - 201
Target Start/End: Original strand, 30502330 - 30502416
Alignment:
Q  115 atgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||||||||||||| || | |||||||||||||||  || |||||||||||||||||| ||||| ||||| | ||||||||||||||    
T  30502330 atgaagcacgaacaatccttggattaggcatgtcccagtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaat 30502416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 115 - 201
Target Start/End: Original strand, 30542673 - 30542759
Alignment:
Q  115 atgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||||||||||||| || | |||||||||||||||  || |||||||||||||||||| ||||| ||||| | ||||||||||||||    
T  30542673 atgaagcacgaacaatccttggattaggcatgtcccagtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaat 30542759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 113 - 198
Target Start/End: Complemental strand, 42893479 - 42893394
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactg 198  Q
    |||||||||| | |||||| ||  ||||||| ||||||||| ||||||| |||| ||||||||||| |||||||||||||||||||    
T  42893479 ctatgaagcatggacactcctcatattaggcgtgtcctggtgtcggacacgtgttgtgtctgacaccgacacttgtaattacactg 42893394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 21576685 - 21576773
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||||||||||| |||||| ||||||||||| |||||  || || |||| |||||||||| ||||  ||||||||||||||||||||||    
T  21576685 ctatgaagcacggacactcctcggattaggcgtgtcccagtgtcagacacgtgtcgtgtccgacatcgacacttgtaattacactgaat 21576773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 201
Target Start/End: Complemental strand, 27932354 - 27932266
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    ||||||||||| ||||||| ||| ||||||| ||||||||| || |||| |||||||||| |||||  | | |||||||||||||||||    
T  27932354 ctatgaagcacaaacactcctcgaattaggcgtgtcctggtgtccgacacgtgtcgtgtccgacaccaagatttgtaattacactgaat 27932266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 28588614 - 28588702
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||||||||| | |||||| |||||||| || ||||||||| || || |||||||||||| ||||| ||||| | ||||||||||||||    
T  28588614 ctatgaagcatggacactcttcggattaagcgtgtcctggtgtcagatatgtgtcgtgtccgacaccgacacctataattacactgaat 28588702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 113 - 197
Target Start/End: Complemental strand, 43565000 - 43564916
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacact 197  Q
    |||||||||||| |||||  ||||||||||| ||||| ||  |||||||  ||||||||| ||||| ||||||| ||||||||||    
T  43565000 ctatgaagcacggacacttctcggattaggcgtgtcccggcgtcggacacatgtcgtgtccgacaccgacacttataattacact 43564916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 112 - 182
Target Start/End: Complemental strand, 30098457 - 30098387
Alignment:
Q  112 actatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgac 182  Q
    ||||||||||||| ||| || ||||||||||  ||||||||| || |||| |||||||||| |||||||||    
T  30098457 actatgaagcacggacattcctcggattaggtgtgtcctggtgtctgacacgtgtcgtgtccgacactgac 30098387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 178
Target Start/End: Complemental strand, 31084447 - 31084382
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacac 178  Q
    ||||||| |||| |||||| |||||||||||||||||  || ||||||| |||||||||| |||||    
T  31084447 ctatgaaccacggacactcctcggattaggcatgtcccagtgtcggacacgtgtcgtgtccgacac 31084382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 2437030 - 2436982
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggaca 161  Q
    ||||||||||||||||||| ||||||||||| |||| |||| |||||||    
T  2437030 ctatgaagcacgaacactcctcggattaggcgtgtcttggtgtcggaca 2436982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 201
Target Start/End: Complemental strand, 4105374 - 4105290
Alignment:
Q  117 gaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||||||| |||||| ||||||||||| |||||  ||||| ||||  | ||| |||||| ||  |||||||||||||||||||||    
T  4105374 gaagcacggacactcctcggattaggcgtgtcccagtatcagacacatatcgagtctgatacctacacttgtaattacactgaat 4105290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 7677835 - 7677764
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacac 184  Q
    |||||||||||  || ||| ||||||||||| ||||| ||| ||||||||||| |||||| ||||| |||||    
T  7677835 ctatgaagcaccgactctcctcggattaggcgtgtcccggtgtcggacatgtgacgtgtcagacaccgacac 7677764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 15382591 - 15382545
Alignment:
Q  126 acactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtc 172  Q
    |||||| ||||||||||| ||||| ||| ||||||||||||||||||    
T  15382591 acactcctcggattaggcgtgtcccggtgtcggacatgtgtcgtgtc 15382545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 201
Target Start/End: Complemental strand, 15884057 - 15884019
Alignment:
Q  163 gtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||||||||| ||||| ||||||||||||||||||||||    
T  15884057 gtgtcgtgtccgacaccgacacttgtaattacactgaat 15884019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 184
Target Start/End: Complemental strand, 39698674 - 39698600
Alignment:
Q  110 tgactatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacac 184  Q
    ||||||||||||||| |||||| ||||||||||| ||||  ||| ||||| |  ||||||||| ||||| |||||    
T  39698674 tgactatgaagcacggacactcctcggattaggcgtgtctcggtgtcggatacatgtcgtgtccgacaccgacac 39698600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 184
Target Start/End: Complemental strand, 19579829 - 19579760
Alignment:
Q  115 atgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacac 184  Q
    ||||| |||| |||||| ||||||||||| ||||| ||| |  ||||| ||||||||| |||||||||||    
T  19579829 atgaaacacgtacactcctcggattaggcgtgtcccggtgttagacatatgtcgtgtccgacactgacac 19579760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 17123167 - 17123108
Alignment:
Q  112 actatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtc 172  Q
    ||||||||||||| |||||| ||||||||||| |||||  || |||||||||| |||||||    
T  17123167 actatgaagcacggacactcctcggattaggcgtgtcc-cgtgtcggacatgtttcgtgtc 17123108  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 21194063 - 21194151
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||| ||||||| |||||| ||||||||||| || || ||| || |||||||||||||||  ||||  | || | ||||||||||||||    
T  21194063 ctataaagcacggacactcctcggattaggcgtgccccggtgtctgacatgtgtcgtgtccaacaccaatacctataattacactgaat 21194151  T

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Target: scaffold0083 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 45470 - 45558
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||||||||||| ||| || | ||||||||||||||  ||| || |||| |||||||||| ||||| ||||||||||||||||||||||    
T  45470 ctatgaagcacgtacaatctttggattaggcatgtcgcggtgtcagacacgtgtcgtgtccgacaccgacacttgtaattacactgaat 45558  T

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Target: scaffold0053 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 197
Target Start/End: Complemental strand, 8917 - 8833
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacact 197  Q
    |||||||||||| | |||| || |||||||| ||||  ||| ||||||| |||||||||| ||||| ||||||||||||||||||    
T  8917 ctatgaagcacggagactcctcagattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacact 8833  T

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Target: scaffold0793 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 4821 - 4911
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgt--ctgacactgacacttgtaattacactgaat 201  Q
    |||||||||||| |||||| ||||||||||| |||||  || |||||||||||||||||    |||||  |||||||||||||||||||||    
T  4821 ctatgaagcacggacactcctcggattaggcgtgtccctgtgtcggacatgtgtcgtgtacaagacaccaacacttgtaattacactgaat 4911  T

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Target: scaffold0512 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 195
Target Start/End: Original strand, 4976 - 5058
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattaca 195  Q
    |||||||||||  |||||| ||||||||||||||||    | ||||||| |||||||||| ||||| ||||||||||||||||    
T  4976 ctatgaagcacagacactcctcggattaggcatgtctcaatgtcggacacgtgtcgtgtccgacaccgacacttgtaattaca 5058  T

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Target: scaffold0008 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 263303 - 263372
Alignment:
Q  115 atgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacac 184  Q
    ||||| |||| |||||| ||||||||||| |||| |||||||| ||| |||||||||||||||| |||||    
T  263303 atgaaccacggacactcctcggattaggcgtgtcttggtatcgaacacgtgtcgtgtctgacaccgacac 263372  T

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Target: scaffold0475 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 113 - 197
Target Start/End: Complemental strand, 3427 - 3343
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacact 197  Q
    |||||||||||| |||||| ||||||||||| |||||  || ||   || ||||| |||| ||||||||||||||||||||||||    
T  3427 ctatgaagcacggacactcctcggattaggcgtgtcccagtgtccaccacgtgtcttgtccgacactgacacttgtaattacact 3343  T

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Target: scaffold0004 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 114 - 178
Target Start/End: Complemental strand, 92940 - 92876
Alignment:
Q  114 tatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacac 178  Q
    ||||||||||| |||||| ||||||||||| ||||| ||| || ||||||||||||||| |||||    
T  92940 tatgaagcacggacactcctcggattaggcgtgtccaggtgtccgacatgtgtcgtgtccgacac 92876  T

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Target: scaffold0361 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 113 - 201
Target Start/End: Complemental strand, 14646 - 14561
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||||||||||| |||||| |  |||||||| ||||  ||| ||||||| |||||||||| |||||   ||||||||||||||||||||    
T  14646 ctatgaagcacgtacactccttcgattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacac---cacttgtaattacactgaat 14561  T

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Target: scaffold0022 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 111 - 201
Target Start/End: Complemental strand, 90964 - 90874
Alignment:
Q  111 gactatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactgaat 201  Q
    |||||||||||||  |||||||| ||||||||| |||  |||| ||||||| |||| ||||||||||  ||||  | ||||||||||||||    
T  90964 gactatgaagcacatacactcattggattaggcgtgttttggtgtcggacacgtgttgtgtctgacatcgacatatataattacactgaat 90874  T

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Target: scaffold0122 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 198
Target Start/End: Complemental strand, 8128 - 8044
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaattacactg 198  Q
    |||| |||||||||||| | ||||||||||  ||| ||| ||||| |||| ||||||||| ||||| ||||||| |||||||||||    
T  8128 ctattaagcacgaacacccttcggattaggtgtgttctgatatcgaacatatgtcgtgtccgacaccgacactt-taattacactg 8044  T

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Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 178
Target Start/End: Complemental strand, 241724 - 241659
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacac 178  Q
    |||||||||||| |||||  ||||||||||| ||||| ||| ||||||| |||||||||| |||||    
T  241724 ctatgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacac 241659  T

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Target: scaffold0136 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 178
Target Start/End: Original strand, 3778 - 3843
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcctggtatcggacatgtgtcgtgtctgacac 178  Q
    |||||||||| | |||||| ||||||||||| ||||  | | |||||||||||||||||| |||||    
T  3778 ctatgaagcaaggacactcctcggattaggcgtgtctcgatgtcggacatgtgtcgtgtccgacac 3843  T

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Target: scaffold0020 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 135262 - 135311
Alignment:
Q  112 actatgaagcacgaacactcatcggattaggcatgtcctggtatcggaca 161  Q
    |||||||||||||||||| | || |||||||| ||||||||| |||||||    
T  135262 actatgaagcacgaacacgcctcagattaggcgtgtcctggtgtcggaca 135311  T

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Target: scaffold0697 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 1731 - 1683
Alignment:
Q  145 tgtcctggtatcggacatgtgtcgtgtctgacactgacacttgtaatta 193  Q
    |||||| || |||||||||||||||||| ||||| ||||||| ||||||    
T  1731 tgtcctagtgtcggacatgtgtcgtgtccgacaccgacacttataatta 1683  T

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Target: scaffold0057 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 149
Target Start/End: Complemental strand, 24155 - 24119
Alignment:
Q  113 ctatgaagcacgaacactcatcggattaggcatgtcc 149  Q
    |||||||||||| |||||||||||||||||| |||||    
T  24155 ctatgaagcacggacactcatcggattaggcgtgtcc 24119  T

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Target: scaffold0018 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 201
Target Start/End: Original strand, 178818 - 178846
Alignment:
Q  173 tgacactgacacttgtaattacactgaat 201  Q
    |||||||||||||||||||||||||||||    
T  178818 tgacactgacacttgtaattacactgaat 178846  T

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