View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9468_low_7 (Length: 367)

Name: NF9468_low_7
Description: NF9468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9468_low_7
NF9468_low_7
[»] chr2 (3 HSPs)
chr2 (266-323)||(16800048-16800105)
chr2 (324-358)||(17426503-17426537)
chr2 (1-35)||(37300034-37300068)
[»] chr7 (3 HSPs)
chr7 (321-358)||(10098264-10098301)
chr7 (324-358)||(20566464-20566498)
chr7 (321-358)||(40141331-40141368)
[»] scaffold1606 (1 HSPs)
scaffold1606 (324-358)||(66-100)
[»] chr1 (1 HSPs)
chr1 (324-358)||(38633258-38633292)
[»] chr6 (1 HSPs)
chr6 (321-358)||(11694165-11694202)
[»] chr5 (2 HSPs)
chr5 (321-358)||(38860273-38860310)
chr5 (322-358)||(28241904-28241940)
[»] chr4 (1 HSPs)
chr4 (321-358)||(6181896-6181933)
[»] chr3 (1 HSPs)
chr3 (322-358)||(49138513-49138549)


Alignment Details
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 266 - 323
Target Start/End: Complemental strand, 16800105 - 16800048
Alignment:
Q  266 tgtttccctaaatttactatctacatacatgaaatgaattttctacatctaaaagaat 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16800105 tgtttccctaaatttactatctacatacatgaaatgaattttctacatctaaaagaat 16800048  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 358
Target Start/End: Complemental strand, 17426537 - 17426503
Alignment:
Q  324 gagaattgttgttcccacatatagtttgtctgtgc 358  Q
    |||||||||||||||||||||||||||| ||||||    
T  17426537 gagaattgttgttcccacatatagtttggctgtgc 17426503  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 37300034 - 37300068
Alignment:
Q  1 ccaaatacatttgactttttatttctatttaaaac 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  37300034 ccaaatacatttgactttttatttatatttaaaac 37300068  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 321 - 358
Target Start/End: Original strand, 10098264 - 10098301
Alignment:
Q  321 aatgagaattgttgttcccacatatagtttgtctgtgc 358  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  10098264 aatgagaattgttgttcccacatatagtttggctgtgc 10098301  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 358
Target Start/End: Complemental strand, 20566498 - 20566464
Alignment:
Q  324 gagaattgttgttcccacatatagtttgtctgtgc 358  Q
    |||||||||||||||||||||||||||| ||||||    
T  20566498 gagaattgttgttcccacatatagtttggctgtgc 20566464  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 358
Target Start/End: Complemental strand, 40141368 - 40141331
Alignment:
Q  321 aatgagaattgttgttcccacatatagtttgtctgtgc 358  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  40141368 aatgagtattgttgttcccacatatagtttggctgtgc 40141331  T

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Target: scaffold1606 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1606
Description:

Target: scaffold1606; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 358
Target Start/End: Complemental strand, 100 - 66
Alignment:
Q  324 gagaattgttgttcccacatatagtttgtctgtgc 358  Q
    |||||||||||||||||||||||||||| ||||||    
T  100 gagaattgttgttcccacatatagtttggctgtgc 66  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 358
Target Start/End: Complemental strand, 38633292 - 38633258
Alignment:
Q  324 gagaattgttgttcccacatatagtttgtctgtgc 358  Q
    |||||||||||||||||||||||||||| ||||||    
T  38633292 gagaattgttgttcccacatatagtttggctgtgc 38633258  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 358
Target Start/End: Complemental strand, 11694202 - 11694165
Alignment:
Q  321 aatgagaattgttgttcccacatatagtttgtctgtgc 358  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  11694202 aatgagaattgctgttcccacatatagtttggctgtgc 11694165  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 358
Target Start/End: Complemental strand, 38860310 - 38860273
Alignment:
Q  321 aatgagaattgttgttcccacatatagtttgtctgtgc 358  Q
    |||||||||||||||||||||||||||| || ||||||    
T  38860310 aatgagaattgttgttcccacatatagtatggctgtgc 38860273  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 358
Target Start/End: Complemental strand, 28241940 - 28241904
Alignment:
Q  322 atgagaattgttgttcccacatatagtttgtctgtgc 358  Q
    ||||||||||||||||||||||||||| || ||||||    
T  28241940 atgagaattgttgttcccacatatagtatggctgtgc 28241904  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 358
Target Start/End: Complemental strand, 6181933 - 6181896
Alignment:
Q  321 aatgagaattgttgttcccacatatagtttgtctgtgc 358  Q
    |||||||||||||||||||||||||||| || ||||||    
T  6181933 aatgagaattgttgttcccacatatagtatggctgtgc 6181896  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 358
Target Start/End: Original strand, 49138513 - 49138549
Alignment:
Q  322 atgagaattgttgttcccacatatagtttgtctgtgc 358  Q
    |||||||||| ||||||||||||||||||| ||||||    
T  49138513 atgagaattgctgttcccacatatagtttggctgtgc 49138549  T

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