View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9469_high_13 (Length: 239)
Name: NF9469_high_13
Description: NF9469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9469_high_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 9213017 - 9212795
Alignment:
| Q |
1 |
cgacaacttcaactgtggtagaccaaaaaagaccttgtaatgttaatgcttttgagattgatgtgaagattataggaaatgatgctatggtgagagtaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9213017 |
cgacaacttcaactgtggtagaccaaaaaagaccttgtaatgttaatgcgtttgagattgatgtgaagattataggaaatgatgctatggtgagagtaca |
9212918 |
T |
|
| Q |
101 |
aagtgagaatgttaatcaccctggtgcaagattaatgagtgtattgaaggatttagagtttcaggtacatcatgctagtatatcgactgttaatgaagtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9212917 |
aagtgagaatgttaatcaccctggtgcaagattaatgagtgtattgaaggatttggagtttcaggtgcatcatgctagtatatcgactgttaatgaagtt |
9212818 |
T |
|
| Q |
201 |
atggttcaagatgttgttgttcg |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
9212817 |
atggttcaagatgttgttgttcg |
9212795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 47 - 221
Target Start/End: Original strand, 9195068 - 9195245
Alignment:
| Q |
47 |
tgcttttgagattgatgtgaagattataggaaatgatgctatggtgagagtacaaagtgagaatgttaatcaccctggtgcaagattaatgagtgtattg |
146 |
Q |
| |
|
|||||| ||||||||||||||||| |||||| ||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9195068 |
tgctttagagattgatgtgaagatcataggacatgatgctatggtgagagttcaaagtttgaatgttaatcaccctagtgcaagattaatgagtgtattg |
9195167 |
T |
|
| Q |
147 |
aaggatttagagtttcaggtacatcatgctagtatatcgactgttaatgaagtt---atggttcaagatgttgttgtt |
221 |
Q |
| |
|
|| ||||| |||| |||||||||||| |||||||||||||| |||||| ||||| ||||||||||||||| ||||| |
|
|
| T |
9195168 |
aaagatttggagtatcaggtacatcaggctagtatatcgaccgttaataaagttgtaatggttcaagatgttattgtt |
9195245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 103 - 223
Target Start/End: Complemental strand, 9235313 - 9235193
Alignment:
| Q |
103 |
gtgagaatgttaatcaccctggtgcaagattaatgagtgtattgaaggatttagagtttcaggtacatcatgctagtatatcgactgttaatgaagttat |
202 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9235313 |
gtgagaatgttaattaccctagtgcaagattaatgagtgtattgaaggatttgaagtttcaggtacaacatgctagtatatcgactgttaatgaagttat |
9235214 |
T |
|
| Q |
203 |
ggttcaagatgttgttgttcg |
223 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
9235213 |
ggttcaaggtgttgttgttcg |
9235193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University