View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9469_high_7 (Length: 366)
Name: NF9469_high_7
Description: NF9469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9469_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 93 - 279
Target Start/End: Original strand, 31442640 - 31442826
Alignment:
| Q |
93 |
tatgaggaacttatttttcttcttctttgtactattaaattacgttaatgtagagtaactcaaaaataatactagatgggagctttgaagggtttaaaaa |
192 |
Q |
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| T |
31442640 |
tatgaggaacttatttttcttcttctttgtactattaaattacgttaatgtagagtaactcaaaaataatactagatgggagctttgaagggcttaaaaa |
31442739 |
T |
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| Q |
193 |
tattcaatttctcttcatcttgttataataatcttaaaattaaaattacattaattatagacagtttcatatcataaataagttgag |
279 |
Q |
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| T |
31442740 |
tattcaatttgttttcatcttgttataataatcttaaaattaaaattacgttaatcatagacaatttcatatcataaataagttgag |
31442826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 294 - 352
Target Start/End: Original strand, 31443165 - 31443223
Alignment:
| Q |
294 |
gggccctttatctctcgtctccttgatctcctccaaagcttttccattctctctgctcc |
352 |
Q |
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| T |
31443165 |
gggccctttatctctcatctctttgatctcctccaaagcttttccattctctctgctcc |
31443223 |
T |
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