View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9469_low_10 (Length: 399)
Name: NF9469_low_10
Description: NF9469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9469_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 10102573 - 10102190
Alignment:
| Q |
1 |
atgcactataaagtataaatagttattaggcgtcattaaaaaataccaatgaaatatgaaacgagatagtactcttcattgcacaagaaggtgatcagtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10102573 |
atgcactataaagtataaatagttattaggcgtcattaaaaaataccaatgaaatatgaaacgagatagtactcttcattgcacaagaaggtgatcagtt |
10102474 |
T |
|
| Q |
101 |
taacnnnnnnnaaagaacatagtacaattcattgtataattcatattgttgcacttggcaaatattttgaaatgactcataaatacagatttgtattttg |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10102473 |
taactttttttaaagaacatagtacaattcattgtataattcatattgttgcacttggcaaatattttgaaatgactcataaatacagatttgtattttg |
10102374 |
T |
|
| Q |
201 |
ttgccaaatcctcagtcctcacaccatcaatcaaatctgttatggcattacacccaacctttgttttaggaaaagagaatggacacatggaatgaagttc |
300 |
Q |
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| T |
10102373 |
ttgccaaatcctcagtcctcacaccatcaatcaaatctgttatggcattacacccaacctttgttttaggaaaagagaatggacacatggaatgaagttc |
10102274 |
T |
|
| Q |
301 |
taaaagtcatctccaagccttccttgcaagagcgaattgttttttacttatcaaagtcattgtagaaactctgaatgcttttta |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10102273 |
taaaagtcatctccaagccttccttgcaagagcgaattgttttttacttatcaaagtcattgtagaaactctgaatgcttttta |
10102190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 33 - 164
Target Start/End: Original strand, 10213613 - 10213743
Alignment:
| Q |
33 |
tcattaaaaaataccaatgaaatatgaaacgagatagtactcttcattgcacaagaaggtgatcagtttaacnnnnnnnaaagaacatagtacaattcat |
132 |
Q |
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||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||| ||||| |
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| T |
10213613 |
tcattcaaaaataccaatgaaatataaaacgagatagtactcttcattgcataagaaggtgatcaatttaac-ttttttaaagaacatagtacacttcat |
10213711 |
T |
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| Q |
133 |
tgtataattcatattgttgcacttggcaaata |
164 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
10213712 |
cgtataattcatattgttgcacttggcaaata |
10213743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 39 - 164
Target Start/End: Original strand, 9676022 - 9676142
Alignment:
| Q |
39 |
aaaaataccaatgaaatatgaaacgagatagtactcttcattgcacaagaaggtgatcagtttaacnnnnnnnaaagaacatagtacaattcattgtata |
138 |
Q |
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|||||||||||||||| || ||||||||||||||||||||||||| |||||||| || ||||| ||||||||||||||| ||||||||||| |
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| T |
9676022 |
aaaaataccaatgaaacataaaacgagatagtactcttcattgcataagaaggtaat----ttaactttttt-aaagaacatagtacacttcattgtata |
9676116 |
T |
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| Q |
139 |
attcatattgttgcacttggcaaata |
164 |
Q |
| |
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||| |||||||||||||||||||||| |
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| T |
9676117 |
atttatattgttgcacttggcaaata |
9676142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 42 - 162
Target Start/End: Original strand, 12105718 - 12105837
Alignment:
| Q |
42 |
aataccaatgaaatatgaaacgagatagtactcttcattgcacaagaaggtgatcagtttaacnnnnnnnaaagaacatagtacaattcattgtataatt |
141 |
Q |
| |
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|||||||| |||| |||||| ||||||||||||||||||||||||||||||||||| |||||| ||||| ||||| ||| ||||||||| |||| |
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| T |
12105718 |
aataccaacgaaagatgaaatgagatagtactcttcattgcacaagaaggtgatcaatttaac-tttttcaaagagcatagaacacttcattgtacaatt |
12105816 |
T |
|
| Q |
142 |
catattgttgcacttggcaaa |
162 |
Q |
| |
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|||||||||| |||||||||| |
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| T |
12105817 |
catattgttgaacttggcaaa |
12105837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 265 - 384
Target Start/End: Original strand, 9660676 - 9660800
Alignment:
| Q |
265 |
tttaggaaaagagaatggacacatggaatgaagttctaaaagtcatctccaagccttccttgcaagagc-gaattgttttttac----ttatcaaagtca |
359 |
Q |
| |
|
|||| |||||||||| |||||||||| ||||||||||||||||| |||||| |||| ||||||||||| ||||| | ||| || ||||| |||||| |
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| T |
9660676 |
tttaagaaaagagaacggacacatggtgtgaagttctaaaagtcagctccaaaccttgcttgcaagagcagaattctgtttaacaatgttatcgaagtca |
9660775 |
T |
|
| Q |
360 |
ttgtagaaactctgaatgcttttta |
384 |
Q |
| |
|
||||||||||||||||||||||||| |
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| T |
9660776 |
ttgtagaaactctgaatgcttttta |
9660800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 221 - 341
Target Start/End: Original strand, 9677735 - 9677863
Alignment:
| Q |
221 |
acaccatcaatcaaatctgttatg---gcattacacccaacctttgttttag----gaaaagagaatggacacatggaatgaagttctaaaagtcatctc |
313 |
Q |
| |
|
|||||||||| ||||| ||||||| |||||| ||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
9677735 |
acaccatcaaacaaatttgttatgatggcattagacccagcctttgttttatttaagaaaagagaatggacacatggtgtgaagttctaaaagtcagctc |
9677834 |
T |
|
| Q |
314 |
caagccttccttgcaagagc-gaattgtt |
341 |
Q |
| |
|
||| |||| |||||||||| |||||||| |
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| T |
9677835 |
caaaccttgtttgcaagagcagaattgtt |
9677863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 345 - 384
Target Start/End: Original strand, 12107281 - 12107320
Alignment:
| Q |
345 |
tacttatcaaagtcattgtagaaactctgaatgcttttta |
384 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |
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| T |
12107281 |
tacttatcaaagtcattgtagcaactctgaatgcttttta |
12107320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 9684362 - 9684419
Alignment:
| Q |
39 |
aaaaataccaatgaaatatgaaacgagatagtactcttcattgcacaagaaggtgatc |
96 |
Q |
| |
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|||||||||| ||||| || |||| |||||||||||||||||||| ||||||||||| |
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| T |
9684362 |
aaaaataccattgaaaaatcaaacaagatagtactcttcattgcatgagaaggtgatc |
9684419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 166 - 212
Target Start/End: Original strand, 9659112 - 9659159
Alignment:
| Q |
166 |
tttgaaatgactcataaatacagatttgta-ttttgttgccaaatcct |
212 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||| ||||||| |
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| T |
9659112 |
tttgaaatgactcatgaatacagatttgtatttttgttgctaaatcct |
9659159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 307
Target Start/End: Original strand, 12106377 - 12106413
Alignment:
| Q |
271 |
aaaagagaatggacacatggaatgaagttctaaaagt |
307 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||| |
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| T |
12106377 |
aaaagagaatggacacatggtgtgaagttctaaaagt |
12106413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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