View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9469_low_13 (Length: 379)
Name: NF9469_low_13
Description: NF9469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9469_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 17 - 371
Target Start/End: Complemental strand, 7449396 - 7449041
Alignment:
| Q |
17 |
aattgctctgtcttgtttacataacacaaaagctcttctctcctaacataagnnnnnnn-gtcaacatgttactctcgtcctgactataagaaaaaatta |
115 |
Q |
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| T |
7449396 |
aattgctctgtcttgtttacataacacaaaagctcttctctcctaacataagaaaaaaaagtcaacatgttactctcgtcctgactataagaaaaagtta |
7449297 |
T |
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| Q |
116 |
agtcaacaaaactctgatacgaaatataagagaaagttaagtcaataaaagttgatgtacctgacaaatatcgcagagagggtgttgtttgggagttggg |
215 |
Q |
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| T |
7449296 |
agtcaacaaaactcttatacgaaatataaaagaaagttaagtcaacaacaattgatgtacctgacaaatatcgcagagagggtgttgtttgggagttggg |
7449197 |
T |
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| Q |
216 |
ttatgaagagcgagacggtggtgtttggaagccagtttgttggcgtggtggacacggtggtcacagtcgatacataaggcggcttcatcggcggtgcaga |
315 |
Q |
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| T |
7449196 |
ttatgaagagcgagacggtggtgtttggaagccagtttgttggcgtggtggacacggtggtcacagtcgatacataaggcggcttcatcggcggtgcaga |
7449097 |
T |
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| Q |
316 |
ataatgaagcttcatttttgttgcatacatcacactggatcttcattgcctatgct |
371 |
Q |
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| T |
7449096 |
ataatgaagcttcatttttgttgcatacatcacactggatcttcattgcttatgct |
7449041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 325
Target Start/End: Complemental strand, 52823828 - 52823738
Alignment:
| Q |
235 |
ggtgtttggaagccagtttgttggcgtggtggacacggtggtcacagtcgatacataaggcggcttcatcggcggtgcagaataatgaagc |
325 |
Q |
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| T |
52823828 |
ggtgtttggaggcgagtttgttagcatggtggacacggtggtcgcaggtggagcataaggcagcttcatcggcggtgcagaataaagaagc |
52823738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 174
Target Start/End: Complemental strand, 24216217 - 24216182
Alignment:
| Q |
139 |
atataagagaaagttaagtcaataaaagttgatgta |
174 |
Q |
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| T |
24216217 |
atataagagaaagttaagtcaataaaatttgatgta |
24216182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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