View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9469_low_14 (Length: 376)
Name: NF9469_low_14
Description: NF9469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9469_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 6 - 363
Target Start/End: Complemental strand, 25519201 - 25518843
Alignment:
| Q |
6 |
tttggtggttcgggtggtaatattggaagctgcataggttcaagaaaaagttgtggtggtggcggaggtgcagactgaaaaggaactggattcattgata |
105 |
Q |
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| T |
25519201 |
tttggtggttcgggtggtaatattggaagctgcataggttcaagaaaaagttgtggtggtggcggaggtgcagactgaaaaggaactggattcattgata |
25519102 |
T |
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| Q |
106 |
gcactgtgtacagtgtaaatcaggtatcctgaaaaacaaaactacaagaataagaacaagagtcaatac-actaaacaataaaagaataaatacaattga |
204 |
Q |
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| T |
25519101 |
gcaatgtgtacagtgtaaatcaggtatcctgaaaaacaaaactacaagaataaggaaaagagtcaataccactaaacaataaaagaataaatacaattga |
25519002 |
T |
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| Q |
205 |
tttatcgaaacaaaaagtggaaatattaacatatattaaaatccgcaaaatctgcatttaagcaaatcattatttatgcattgtgagtgggtaaaaacag |
304 |
Q |
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| T |
25519001 |
tttatcgaaacaaaaagtggaaatattaacatatattaaaatccgcaaaatctgcatttaagcaaatctttatttatgcattgtgagtgggtaaaaacag |
25518902 |
T |
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| Q |
305 |
tgtggtttgcatcaaaattaggtgtgaggtttggctacactaacaacgttgtgatgtcc |
363 |
Q |
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| T |
25518901 |
tgtggtttgcatcaaaattaggtgtgagatttggctacactaacaacgttgtgatgtcc |
25518843 |
T |
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