View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9469_low_15 (Length: 368)
Name: NF9469_low_15
Description: NF9469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9469_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 35419179 - 35419456
Alignment:
| Q |
1 |
ctagaggaaatggaagaagatgattcactacagaactgaaagaagatcattttgagcataattataatgatcaacaaaatgtagatttgctagatcaata |
100 |
Q |
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| T |
35419179 |
ctagaggaattggaagaagatgattcactacagaactggaagaagatcattttgagcataattataatgatcaacaaaatatggatttgcaatatcaata |
35419278 |
T |
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| Q |
101 |
atagttctttccaaccactcctaaaattatacgtatctagaatcatgtcaattaaaaacaacacctaaatgagaaccaacccaatgttattttgaccatt |
200 |
Q |
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| T |
35419279 |
atagttctttccaatcactcctaaaattatacgtatctagaatcatgtgaattaaaaacgacacctaaatgagaatcaaaccaatgttattttgaccatt |
35419378 |
T |
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| Q |
201 |
gacattccatgaagtgaggtgaaactgtctaattattttgtataaaaaatcacacacaataggtcacaattgagttat |
278 |
Q |
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| T |
35419379 |
gacattccatgaagtgaggtgaaattgtctaattattttgtataaaaaatcacacacaatgggtcacaattgatttat |
35419456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 276 - 359
Target Start/End: Original strand, 35419519 - 35419602
Alignment:
| Q |
276 |
tatcttaaaatagttttaattttcctcaatttttccatacattttatcaagatcttgcgccaaattatagagctagaataatct |
359 |
Q |
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| T |
35419519 |
tatcttaaaatagttttaattttcctcagtttttccatacattttatcaagatcttgcgccaaattatagagctagaataatct |
35419602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 94 - 271
Target Start/End: Original strand, 35428403 - 35428581
Alignment:
| Q |
94 |
atcaataatagttctttccaaccactcctaaaattatacg-ta--tctagaatcatgtcaattaaaaacaacacctaaatgagaaccaacccaatgttat |
190 |
Q |
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| T |
35428403 |
atcaataatagttctttccaaccactcctgaaatgaaaaaatacttctataatcatgtgaattaaaaacgacacctaaatgagaaccaaaccaaacctat |
35428502 |
T |
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| Q |
191 |
tttgaccattgacattccatgaagtgaggtgaaactgtctaattattttgtataaaaaatcacacacaataggtcacaatt |
271 |
Q |
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| T |
35428503 |
tatgaccattgacattccatgaagagaggtgaaattgtctcattagtttatctaaaaaa--acacacaatgggtcacaatt |
35428581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 2 - 98
Target Start/End: Original strand, 35418964 - 35419061
Alignment:
| Q |
2 |
tagaggaaatggaagaagatgattcactaca-gaactgaaagaagatcattttgagcataattataatgatcaacaaaatgtagatttgctagatcaa |
98 |
Q |
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| T |
35418964 |
tagaggaatgggaagaagatgattcactacatgaattggaagaagatcattttgagcataattataatgatcaacaaaatgtggatttgctagatcaa |
35419061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 276 - 357
Target Start/End: Original strand, 35428650 - 35428732
Alignment:
| Q |
276 |
tatcttaaaatagttttaattttcctcaatttttccatacatttt-atcaagatcttgcgccaaattatagagctagaataat |
357 |
Q |
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| T |
35428650 |
tatcttgaaatagtttaaattttcctcaatttttccatactttttgttcaagatcttgcgccgaattatagagctaaaataat |
35428732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 99
Target Start/End: Original strand, 35418903 - 35418945
Alignment:
| Q |
57 |
cataattataatgatcaacaaaatgtagatttgctagatcaat |
99 |
Q |
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| T |
35418903 |
catatttataatgatcaacaaaatgtggatttgctagatcaat |
35418945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 99
Target Start/End: Original strand, 35419119 - 35419161
Alignment:
| Q |
57 |
cataattataatgatcaacaaaatgtagatttgctagatcaat |
99 |
Q |
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| T |
35419119 |
cataattatattgatcaacaaaatatggatttgctagatcaat |
35419161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 31240315 - 31240259
Alignment:
| Q |
42 |
gaagatcattttgagcataattataatgatcaacaaaatgtagatttgctagatcaa |
98 |
Q |
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| T |
31240315 |
gaagatcattttgagcataattataatgatccacaaaatgtgaatttgctagatcaa |
31240259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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