View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9469_low_19 (Length: 337)

Name: NF9469_low_19
Description: NF9469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9469_low_19
NF9469_low_19
[»] chr3 (19 HSPs)
chr3 (1-321)||(22431636-22431956)
chr3 (1-321)||(22632350-22632673)
chr3 (1-321)||(22468433-22468756)
chr3 (1-318)||(22358490-22358813)
chr3 (1-314)||(22368404-22368717)
chr3 (3-318)||(22443227-22443545)
chr3 (1-318)||(22635991-22636314)
chr3 (1-246)||(22631029-22631277)
chr3 (5-321)||(22437119-22437438)
chr3 (216-321)||(22630924-22631029)
chr3 (105-253)||(22459033-22459181)
chr3 (105-253)||(22482014-22482162)
chr3 (105-153)||(22207785-22207833)
chr3 (13-53)||(22370906-22370946)
chr3 (1-48)||(22207669-22207716)
chr3 (8-46)||(22010502-22010540)
chr3 (8-46)||(22186668-22186706)
chr3 (7-40)||(3221871-3221904)
chr3 (15-48)||(22657830-22657863)
[»] chr1 (2 HSPs)
chr1 (15-48)||(34975186-34975219)
chr1 (13-41)||(4255365-4255393)


Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 22431956 - 22431636
Alignment:
Q  1 gctgatagaagcatcttttcacatagaagatgtcattgatgattatatcttccttgaagaacaacaatcttctgatcctggatgcgctgctggtcttgac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22431956 gctgatagaagcatcttttcacatagaagatgtcattgatgattatatcttccttgaagaacaacaatcttctgatcctggatgcgctgctggtcttgac 22431857  T
Q  101 ttgatcaaaactaagattcttcgtctccaaatagcttacaagattcagaacatcaaatcccgaattagtgaaataaaagatacaactgaaaaagatcatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  22431856 ttgatcaaaactaagattcttcgtctccaaatagcttacaagattcagaacatcaaatcccgaattagtgaaataaaagatacaagtgaaaaagatcatg 22431757  T
Q  201 gcttccatatccaatcttctttggataaagcatcaactagttctgcaacaaacagaaacgcctcattattgcagaatcttcgggacgctccattttatat 300  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  22431756 gcttccatatccaatcttcttcggataaagcatcaactagttctgcaacaaacagaaacgcctcattattgaagaatcttcgggacgctccattttatat 22431657  T
Q  301 ggatgaagctgatgttgtggg 321  Q
    |||||||||||||||||||||    
T  22431656 ggatgaagctgatgttgtggg 22431636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 22632673 - 22632350
Alignment:
Q  1 gctgatagaagcatcttttcacatagaagatgtcattgatgattatatcttccttgaagaacaacaatcttctgatcctggatgcgctgctgg---tctt 97  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||| ||||   | ||    
T  22632673 gctgatagaagcatcttttcacattgaagatgtcattgatgattatatctttcttgaggaacaacaatcttctgatcctggatgtgctactggagctatt 22632574  T
Q  98 gacttgatcaaaactaagattcttcgtctccaaatagcttacaagattcagaacatcaaatcccgaattagtgaaataaaagatacaactgaaaaagatc 197  Q
    |||||| | |||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||| ||||||||||| |||| |||||||||||    
T  22632573 gacttggtgaaaactaagattcttcgtctccaaattgctgacaagattcagaacatcaaatccagaattagagaaataaaagaaacaagtgaaaaagatc 22632474  T
Q  198 atggcttccatatccaatcttctttggataaagcatcaactagttctgcaacaaacagaaacgcctcattattgcagaatcttcgggacgctccatttta 297  Q
    |||||||||| ||||||||||||| ||||||| |||||| ||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||    
T  22632473 atggcttccacatccaatcttcttcggataaaccatcaagtagttctgcaacaaacagaaatgcctcattattgcagaaccttcgagacgctccatttta 22632374  T
Q  298 tatggatgaagctgatgttgtggg 321  Q
    ||||||||||||||||||||||||    
T  22632373 tatggatgaagctgatgttgtggg 22632350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 22468756 - 22468433
Alignment:
Q  1 gctgatagaagcatcttttcacatagaagatgtcattgatgattatatcttccttgaagaacaacaatcttctgatcctggatgcgctgctggtc---tt 97  Q
    ||||||||||||||||| |||||||||||||||  |||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||    ||    
T  22468756 gctgatagaagcatcttatcacatagaagatgtggttgatgattatatcttacttgaggaacaacaatcttctgatcctggatgtgctgctggtgctgtt 22468657  T
Q  98 gacttgatcaaaactaagattcttcgtctccaaatagcttacaagattcagaacatcaaatcccgaattagtgaaataaaagatacaactgaaaaagatc 197  Q
    |||||| | ||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||| || ||||||||||| |||| || ||||||||    
T  22468656 gacttggtgaaaactaagatccttcgtctccaaataacttacaagattcagaacatcaagtcccgaatcagagaaataaaagaaacaagtgcaaaagatc 22468557  T
Q  198 atggcttccatatccaatcttctttggataaagcatcaactagttctgcaacaaacagaaacgcctcattattgcagaatcttcgggacgctccatttta 297  Q
    |||||||| | |||||||||||||  |||||| ||||||  ||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||    
T  22468556 atggcttcaacatccaatcttcttcagataaaccatcaagcagttctgcaacaaacagaaacgcctcatttttgcagaaccttcgagacgctccatttta 22468457  T
Q  298 tatggatgaagctgatgttgtggg 321  Q
    |||||||||||||||| |||||||    
T  22468456 tatggatgaagctgatcttgtggg 22468433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 22358813 - 22358490
Alignment:
Q  1 gctgatagaagcatcttttcacatagaagatgtcattgatgattatatcttccttgaagaacaacaatcttctgatcctggatgcgctgctggtcttg-- 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||  || ||||||||||||| ||||||||| ||       
T  22358813 gctgatagaagcatcttttcacatagaagatgtcattgatgattatatctttcttgaggaacaacatgctcctgatcctggatgtgctgctggtgttaca 22358714  T
Q  99 -acttgatcaaaactaagattcttcgtctccaaatagcttacaagattcagaacatcaaatcccgaattagtgaaataaaagatacaa---ctgaaaaag 194  Q
     |||   ||||||||| |  | | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||   |||||||||    
T  22358713 aactgtgtcaaaactatggctttccgtctccaaatagcttacaagattcagaacatcaaatcccgaataagtgaaataaatgatacaagaactgaaaaag 22358614  T
Q  195 atcatggcttccatatccaatcttctttggataaagcatcaactagttctgcaacaaacagaaacgcctcattattgcagaatcttcgggacgctccatt 294  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||| ||||||||| |    
T  22358613 atcatggcttctatatccaatcttcttcggataaagcatcaactagttatgcaacaaacagaaacgcctcattatttcagaaccttcgagacgctccact 22358514  T
Q  295 ttatatggatgaagctgatgttgt 318  Q
    ||| |||| |||||||||||||||    
T  22358513 ttacatggttgaagctgatgttgt 22358490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 22368717 - 22368404
Alignment:
Q  1 gctgatagaagcatcttttcacatagaagatgtcattgatgattatatcttccttgaagaacaacaatcttctgatcctggatgcgctgctggtcttgac 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||||||| | |||||    
T  22368717 gctgatagaaacatcttttcacatagaagatgtcattgatgattatatcttccttgaggaacatcaatcttctgaacctggatgtgctgctgctgttgac 22368618  T
Q  101 ttgatcaaaactaagattcttcgtctccaaatagcttacaagattcagaacatcaaatcccgaattagtgaaataaaagatacaactgaaaaagatcatg 200  Q
    ||| |||||||||  |  || ||||||||||| ||||| ||||||||||||||||| |||| |||||| ||||||||||| |||| |||||| |||||||    
T  22368617 ttgctcaaaactacaaaactacgtctccaaattgcttataagattcagaacatcaattcccaaattagggaaataaaagaaacaagtgaaaaggatcatg 22368518  T
Q  201 gcttccatatccaatcttctttggataaagcatcaactagttctgcaacaaacagaaacgcctcattattgcagaatcttcgggacgctccattttatat 300  Q
     |||| | |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||| ||||| || |||||| |||| ||    
T  22368517 acttcgacatccaatcttctttggataaagcatcaagtagttctgcaacaaacagaaatgcctcattatttcagaaccttcgagatgctccactttacat 22368418  T
Q  301 ggatgaagctgatg 314  Q
    |||||| |||||||    
T  22368417 ggatgatgctgatg 22368404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 3 - 318
Target Start/End: Complemental strand, 22443545 - 22443227
Alignment:
Q  3 tgatagaagcatcttttcacatagaagatgtcattgatgattatatcttccttgaagaacaacaatcttctgatcctggatgcgctgctggtcttgactt 102  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||    
T  22443545 tgatagaagcatcttttcatatagaagatgtcattgatgattatatcttccttgaagaacatcaatcttctgatcttggatgtgctgctggtcttgactt 22443446  T
Q  103 gatcaaaactaagattcttcgtctccaaatagcttacaagattcagaacatcaaatcccgaattagtgaaataa---aagatacaactgaaaaagatcat 199  Q
    |||||||||||||||||||||||||||||||||    ||||||||||||||||| || |||||||| |||||||   ||||| ||| |||||||||||||    
T  22443445 gatcaaaactaagattcttcgtctccaaatagcagttaagattcagaacatcaattctcgaattagagaaataaaacaagattcaagtgaaaaagatcat 22443346  T
Q  200 ggcttccatatccaatcttctttggataaagcatcaactagttctgcaacaaacagaaacgcctcattattgcagaatcttcgggacgctccattttata 299  Q
    |||||||| |||| ||||||||  |||||  |||||| ||||||| ||||||    |||||||||||||||||| || ||||  |||||| |  ||||||    
T  22443345 ggcttccaaatccgatcttcttccgataagccatcaagtagttctccaacaagtgaaaacgcctcattattgcacaaccttcaagacgcttccatttata 22443246  T
Q  300 tggatgaagctgatgttgt 318  Q
    |||||||||||||| ||||    
T  22443245 tggatgaagctgatattgt 22443227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 22636314 - 22635991
Alignment:
Q  1 gctgatagaagcatcttttcacatagaagatgtcattgatgattatatcttccttgaagaacaacaatcttctgatcctggatgcgctgctggtcttg-- 98  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||  || |||||||||| || ||||||| |  |       
T  22636314 gctgatagaagcatcttttcacattgaagatgtcattgatgattatatctttcttgaggaacaacatgctcctgatcctggttgtgctgctgttgctaca 22636215  T
Q  99 -acttgatcaaaactaagattcttcgtctccaaatagcttacaagattcagaacatcaaatcccgaattagtgaaataaaagatacaa---ctgaaaaag 194  Q
     |||   ||||||||| |  | | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||   |||||||||    
T  22636214 aactgtgtcaaaactatggctttccgtctccaaatagcttacaagattcagaacatcaaatcccgaataagtgaaataaatgatacaagaactgaaaaag 22636115  T
Q  195 atcatggcttccatatccaatcttctttggataaagcatcaactagttctgcaacaaacagaaacgcctcattattgcagaatcttcgggacgctccatt 294  Q
    ||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||| ||||||||| |    
T  22636114 atcatggcttctatatccaatcttcatcggataaagcatcaactagttctgcaacaaacagaaacgcctcactatttcagaaccttcgagacgctccact 22636015  T
Q  295 ttatatggatgaagctgatgttgt 318  Q
    ||| |||| |||||||||||||||    
T  22636014 ttacatggttgaagctgatgttgt 22635991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 22631277 - 22631029
Alignment:
Q  1 gctgatagaagcatcttttcacatagaagatgtcattgatgattatatcttccttgaagaacaacaatcttctgatcctggatgcgctgctggtc---tt 97  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||| ||||||||  || ||||||||||||| ||||||||     ||    
T  22631277 gctgatagaagcatctttccacatggaagatgtcattgatgattatatcttccatgaggaacaacatgctcctgatcctggatgtgctgctggagccgtt 22631178  T
Q  98 gacttgatcaaaactaagattcttcgtctccaaatagcttacaagattcagaacatcaaatcccgaattagtgaaataaaagatacaactgaaaaagatc 197  Q
    |||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||| |||| |||||||||||    
T  22631177 gacttggtgaaaactaagattcttcgtctccaaattgcttacaagattcagaacatcaaatcccaaattagagaaataaaagaaacaagtgaaaaagatc 22631078  T
Q  198 atggcttccatatccaatcttctttggataaagcatcaactagttctgc 246  Q
    |||||||||| ||||||||||||| ||||||| |||||| |||||||||    
T  22631077 atggcttccacatccaatcttcttcggataaaccatcaagtagttctgc 22631029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 5 - 321
Target Start/End: Complemental strand, 22437438 - 22437119
Alignment:
Q  5 atagaagcatcttttcacatagaagatgtcattgatgattatatcttccttgaagaacaacaatcttctgatcctggatgcgctgctggtcttg---act 101  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||| || ||||||||||||| || ||||||       |||    
T  22437438 atagaagcatcttttgacatagaagatgtcattgatgattatatcttccatgaggaacaacaagctcctgatcctggatgtgccgctggtgccacaaact 22437339  T
Q  102 tgatcaaaactaagattcttcgtctccaaatagcttacaagattcagaacatcaaatcccgaattagtgaaataaaagatacaactgaaaaagatcatgg 201  Q
       ||||||||| |  ||  |||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |     
T  22437338 gtgtcaaaactatggctcaccgtctccaaatagcctacacgattcagaacatcaaatcccgaatgagtgaaataaaagatacaagtgaaaaagatcaagc 22437239  T
Q  202 cttccatatccaatcttctttggataaagcatcaactagttctgcaacaaacagaaacgcctcattattgcagaatcttcgggacgctccattttatatg 301  Q
    ||||| | |||||||||||| |||||||||||||| |||||||||| |||||| ||||   |||||||| ||||| |||||  | ||||||||| |||||    
T  22437238 cttccgtctccaatcttcttcggataaagcatcaagtagttctgcaccaaacataaacaattcattatttcagaaccttcgacaggctccatttcatatg 22437139  T
Q  302 gatgaagctgatgttgtggg 321  Q
     ||||||||||||| |||||    
T  22437138 aatgaagctgatgtcgtggg 22437119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 216 - 321
Target Start/End: Complemental strand, 22631029 - 22630924
Alignment:
Q  216 cttctttggataaagcatcaactagttctgcaacaaacagaaacgcctcattattgcagaatcttcgggacgctccattttatatggatgaagctgatgt 315  Q
    |||||| ||||||| |||||| |||||||||||||||||||||| |||||||||| ||||| ||||| || |||||||| ||| ||||||||||||||||    
T  22631029 cttcttcggataaaccatcaagtagttctgcaacaaacagaaacacctcattattccagaaccttcgagatgctccattgtatttggatgaagctgatgt 22630930  T
Q  316 tgtggg 321  Q
    ||||||    
T  22630929 tgtggg 22630924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 105 - 253
Target Start/End: Complemental strand, 22459181 - 22459033
Alignment:
Q  105 tcaaaactaagattcttcgtctccaaatagcttacaagattcagaacatcaaatcccgaattagtgaaataaaagatacaactgaaaaagatcatggctt 204  Q
    |||||||||  |||||||||| ||||||||| |||||||||||||| |||||||||| |||||||||||| || ||||||| || |||||| ||| ||||    
T  22459181 tcaaaactataattcttcgtcgccaaatagcatacaagattcagaaaatcaaatcccaaattagtgaaatgaatgatacaagtggaaaagaacatagctt 22459082  T
Q  205 ccatatccaatcttctttggataaagcatcaactagttctgcaacaaac 253  Q
     ||||||||||| ||||||||  |||  ||||  ||| |||||||||||    
T  22459081 gcatatccaatcatctttggaacaagggtcaagcagtactgcaacaaac 22459033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 105 - 253
Target Start/End: Complemental strand, 22482162 - 22482014
Alignment:
Q  105 tcaaaactaagattcttcgtctccaaatagcttacaagattcagaacatcaaatcccgaattagtgaaataaaagatacaactgaaaaagatcatggctt 204  Q
    |||||||||  |||||||||| ||||||||| |||||||||||||| |||||||||| |||||||||||| || ||||||| || |||||| ||| ||||    
T  22482162 tcaaaactataattcttcgtcgccaaatagcatacaagattcagaaaatcaaatcccaaattagtgaaatgaatgatacaagtggaaaagaacatagctt 22482063  T
Q  205 ccatatccaatcttctttggataaagcatcaactagttctgcaacaaac 253  Q
     ||||||||||| ||||||||  |||  ||||  ||| |||||||||||    
T  22482062 gcatatccaatcatctttggaacaagggtcaagcagtactgcaacaaac 22482014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 153
Target Start/End: Original strand, 22207785 - 22207833
Alignment:
Q  105 tcaaaactaagattcttcgtctccaaatagcttacaagattcagaacat 153  Q
    ||||||| | |||||||||||| ||||||||||||||||||||| ||||    
T  22207785 tcaaaaccaggattcttcgtctacaaatagcttacaagattcaggacat 22207833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 22370946 - 22370906
Alignment:
Q  13 atcttttcacatagaagatgtcattgatgattatatcttcc 53  Q
    ||||||| |||||||||||||||||||||| ||||||||||    
T  22370946 atctttttacatagaagatgtcattgatgaatatatcttcc 22370906  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 22207669 - 22207716
Alignment:
Q  1 gctgatagaagcatcttttcacatagaagatgtcattgatgattatat 48  Q
    ||||| ||||||||||||||| ||| |||||||||||||||| |||||    
T  22207669 gctgagagaagcatcttttcagatacaagatgtcattgatgaatatat 22207716  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 22010502 - 22010540
Alignment:
Q  8 gaagcatcttttcacatagaagatgtcattgatgattat 46  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  22010502 gaagcagcttttcacatagaagatatcattgatgattat 22010540  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 22186668 - 22186706
Alignment:
Q  8 gaagcatcttttcacatagaagatgtcattgatgattat 46  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  22186668 gaagcagcttttcacatagaagatatcattgatgattat 22186706  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 3221904 - 3221871
Alignment:
Q  7 agaagcatcttttcacatagaagatgtcattgat 40  Q
    ||||||||||||||||||||||||||| ||||||    
T  3221904 agaagcatcttttcacatagaagatgtgattgat 3221871  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 22657863 - 22657830
Alignment:
Q  15 cttttcacatagaagatgtcattgatgattatat 48  Q
    |||||| |||||||||||||||||||||||||||    
T  22657863 cttttcgcatagaagatgtcattgatgattatat 22657830  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 48
Target Start/End: Original strand, 34975186 - 34975219
Alignment:
Q  15 cttttcacatagaagatgtcattgatgattatat 48  Q
    |||||| |||||||||||||||||||||||||||    
T  34975186 cttttctcatagaagatgtcattgatgattatat 34975219  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 4255365 - 4255393
Alignment:
Q  13 atcttttcacatagaagatgtcattgatg 41  Q
    |||||||||||||||||||||||||||||    
T  4255365 atcttttcacatagaagatgtcattgatg 4255393  T

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