View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9469_low_2 (Length: 712)
Name: NF9469_low_2
Description: NF9469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9469_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 608; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 1 - 693
Target Start/End: Complemental strand, 12805537 - 12804845
Alignment:
| Q |
1 |
ttcgctttatacattattttccaaggaaaaatgcctcttatttgtataggtagtgcaaatcaattcttataagtttttcttcaactatacggtcaaagac |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12805537 |
ttcgctttatacattattttccaaagaaaaatgcctcttatttgtataggtagtgcaaatcaattcttataagtttttcttcaactatacggtcaaagac |
12805438 |
T |
|
| Q |
101 |
ctgcacaacttcatattgactctattttcaatgtaaatttggttaattcatgtgcccacttacctataagcatgtccaaagccacttattgaatatgctt |
200 |
Q |
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||||||||| |||||||| ||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
12805437 |
ctgcacaacctcatattgtctctattttcaatgtaaatttggttaattcacgtgtccacttgcctataagcatgtccaaagccacttattgaatatgctt |
12805338 |
T |
|
| Q |
201 |
catgcatcaaagatcactccctgcccgcatcagcgtcatacttcacatgcccaaaaatgtcggtttggttcgtcggtgaaccatattgtactaaaagatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
12805337 |
catgcatcaaagatcactccctgcccgcatcagcctcatacttcacatgcccaaaaatgtcggtttggttcgtccgtgaaccatattgtactaaaagatg |
12805238 |
T |
|
| Q |
301 |
gtttgttttgatagctttagtaaaatcttatacaactttaagtattagcagctatctctacaaatcaacatgagtcaatttagcatgttttgtcgtcact |
400 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
12805237 |
gtttgttttgacagctttagtaaaatcttatacaactttaagtattagcagttatctctacaaatcaacataagtcaatttagtatgttttgtcgtcact |
12805138 |
T |
|
| Q |
401 |
cacacannnnnnngaacttacccaacattcaattcattccaaaattgatcaatgtaatgcacacttgcgaagttcttaccatatgatatatcgggaaaaa |
500 |
Q |
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|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
12805137 |
cacacatttttttgaacttacccaacattcaactcattccaaaattgatcaatgtaatgcacacttgcgaagttcttacgatatgatatatcgggaaaaa |
12805038 |
T |
|
| Q |
501 |
gatgcaaattgtttgtaaaggtagctccggtcattgtctttaagtcttcttttaaccgtacattctcatacgtgcacaatctcacaatccctctcatttc |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12805037 |
gatgcaaattgtttgtaaaggtagctccggtcattgtctttaagtcttcttttaaccgtacattctcatacgtgcacaatctcacaatccctctcatttc |
12804938 |
T |
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| Q |
601 |
aatttgaattggcttcattaatgtgtacctttacatagaagcatatcaagtgccgcttagtaaacaagctttatgcatcagcaatcacttccc |
693 |
Q |
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| T |
12804937 |
aatttgaattggcttcattcatgtgtacctttacatagaagcatatcaagtgccgcttagtaaacaagctttatgcatcaacaatcacttccc |
12804845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 17629070 - 17629016
Alignment:
| Q |
36 |
tcttatttgtataggtagtgcaaatcaattcttataagtttttcttcaactatac |
90 |
Q |
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||||||| ||||||||||| | || |||||||||||||||||| |||||| |||| |
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| T |
17629070 |
tcttattagtataggtagtaccaaacaattcttataagtttttattcaaccatac |
17629016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 253
Target Start/End: Complemental strand, 3656179 - 3656114
Alignment:
| Q |
188 |
attgaatatgcttcatgcatcaaagatcactccctgcccgcatcagcgtcatacttcacatgccca |
253 |
Q |
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|||||| |||||||||||||||| |||||||| ||||| ||||||||||| || |||||||||| |
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| T |
3656179 |
attgaacatgcttcatgcatcaacaatcactccatgccctcatcagcgtcaagctccacatgccca |
3656114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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