View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9469_low_20 (Length: 336)
Name: NF9469_low_20
Description: NF9469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9469_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 16 - 322
Target Start/End: Complemental strand, 36423093 - 36422787
Alignment:
| Q |
16 |
agaagaacctggccttgtttcatggttggttatttcacttgtgctaagatcaacagtgagagtgtgagtgacacgtttatcaagtgcaaccacagaggct |
115 |
Q |
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| T |
36423093 |
agaagaacctggccttgtttcatggttggttatttcacttgtgctaagatcaacagtgagagtgtgagtgacacgtttatcaagtgcaaccacagaggct |
36422994 |
T |
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| Q |
116 |
ttcctaggaagtaatggttgaccatttttccatttgaggacaagttctttgtctggttcttctagaacaatggaattgagagtgtaactgtttgaggact |
215 |
Q |
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| T |
36422993 |
ttcctaggaagtaatggttgaccatttttccatttgaggacaagttctttgtctggttcttctagaacaatggaattgagagtgtaactgtttgaggact |
36422894 |
T |
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| Q |
216 |
taaaaagagggtgtgtcgagaggatcgcacgaactttgttgaattcttggatggttagagggtctaaagggtggcgaggttcatcggattcatggtttgg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36422893 |
taaaaagagggtgtgtcgagaggatcgcacgaactttgttgaattcttggatggttagagggtctaaagggtggcgaggttcatcggattcatggtttgg |
36422794 |
T |
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| Q |
316 |
ttgttga |
322 |
Q |
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||||||| |
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| T |
36422793 |
ttgttga |
36422787 |
T |
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