View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9469_low_27 (Length: 252)
Name: NF9469_low_27
Description: NF9469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9469_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 37 - 240
Target Start/End: Original strand, 10105353 - 10105555
Alignment:
| Q |
37 |
gtcatttgtaaacgaatgttgcaggtcactgagttgtataaaggtgtcagatcagcttatcttggatccatccttcgtaattccattaacacaatctttg |
136 |
Q |
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| T |
10105353 |
gtcatttttaaatgaatgttgcaggtgactgagttgtgtacaggtgtcagatcagcttatct-ggatccttccttcgtaataccatcaacacaatctttg |
10105451 |
T |
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| Q |
137 |
tctaaaggagtaactaggagttttatagttattgatacagttagtattttatcatagggatcaaattctcccacttttatctttcaacatttttatcatc |
236 |
Q |
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| T |
10105452 |
tctgaaggagtaaccaggagttttgtagttattaatatagtaagtattttatcatagggatcaaattctccaactcttatctctcaatttttttatcatc |
10105551 |
T |
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| Q |
237 |
tgtg |
240 |
Q |
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|||| |
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| T |
10105552 |
tgtg |
10105555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 37 - 234
Target Start/End: Complemental strand, 10212922 - 10212729
Alignment:
| Q |
37 |
gtcatttgtaaacgaatgttgcaggtcactgagttgtataaaggtgtcagatcagcttatcttggatccatccttcgtaattccattaacacaatctttg |
136 |
Q |
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| T |
10212922 |
gtcatttttaaacgaatgttgcaggtgactgagttgcgtaaaggtgttagatcagcttat----gatccatcctttgtaattccatcaacacaatctttg |
10212827 |
T |
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| Q |
137 |
tctaaaggagtaactaggagttttatagttattgatacagttagtattttatcatagggatcaaattctcccacttttatctttcaacatttttatca |
234 |
Q |
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| T |
10212826 |
tttaaaggagtaactaggagttttgtagttattaatacagtaagtattttatgatagggatcaaattttctcactcttacctctcaacttttttatca |
10212729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 10102557 - 10102629
Alignment:
| Q |
1 |
tatactttatagtgcatgcataacatgttgaccaacgtcatttgtaaacgaatgttgcaggtcactgagttgt |
73 |
Q |
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| T |
10102557 |
tatactttatagtgcatgcataacatgttgaccaacgtcatttgtaaacgaatgttgcaggtgactgagttgt |
10102629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 37 - 139
Target Start/End: Complemental strand, 9675394 - 9675292
Alignment:
| Q |
37 |
gtcatttgtaaacgaatgttgcaggtcactgagttgtataaaggtgtcagatcagcttatcttggatccatccttcgtaattccattaacacaatctttg |
136 |
Q |
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||||||| ||||| ||||| |||| ||||||||| |||| ||||||| ||||||| ||||| ||||||||||||| |||||||||| |||||| | |||| |
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| T |
9675394 |
gtcatttttaaactaatgtcgcagatcactgagtcgtatgaaggtgttagatcagtttatcctggatccatcctttgtaattccatcaacacagtgtttg |
9675295 |
T |
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| Q |
137 |
tct |
139 |
Q |
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||| |
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| T |
9675294 |
tct |
9675292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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