View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9469_low_33 (Length: 232)
Name: NF9469_low_33
Description: NF9469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9469_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 887349 - 887571
Alignment:
| Q |
1 |
cacctttttattaagctacctttgattttatgatcctctaattaagtaattatattctaacatgctagctatatatccttaattttcagagtaaaggaaa |
100 |
Q |
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| T |
887349 |
cacctttttgtgaagctacctttgattttatgatcctctaattaagtaattatatactaacatgctagctatatatccttaattttcagagaaaaggaaa |
887448 |
T |
|
| Q |
101 |
tatatgcttgctaatc------------gaaactgactttgatgatgataataatgtgataggaggtagtaaagaaannnnnnnnnnnnnatttgtactg |
188 |
Q |
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||||||||||||| || |||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
887449 |
tatatgcttgctattcgaagatagcaaggaaaatgactttgatgatg---ataatgtgataggaggtagtaaagaaatctttctctttttatttgtactg |
887545 |
T |
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| Q |
189 |
attattattactttgatttgtaataa |
214 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
887546 |
attattattactttgatttgtaataa |
887571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 31880664 - 31880610
Alignment:
| Q |
1 |
cacctttttattaagctacctttgattttatgatcctctaattaagtaattatat |
55 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
31880664 |
cacctttttattaagctacctttgattttatgatcctctaattaaataattatat |
31880610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 49 - 119
Target Start/End: Original strand, 31900074 - 31900142
Alignment:
| Q |
49 |
attatattctaacatgctagctatatatccttaattttcagagtaaaggaaatatatgcttgctaatcgaa |
119 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
31900074 |
attatatactaacatgctagctatatatccttaattttcagagtaaaggaa--atatgtttgctaatcgaa |
31900142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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