View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9469_low_38 (Length: 222)

Name: NF9469_low_38
Description: NF9469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9469_low_38
NF9469_low_38
[»] chr6 (15 HSPs)
chr6 (14-208)||(24767426-24767620)
chr6 (14-209)||(18651236-18651431)
chr6 (14-208)||(2553581-2553775)
chr6 (37-208)||(12734069-12734240)
chr6 (14-156)||(21168194-21168337)
chr6 (14-181)||(15958815-15958982)
chr6 (39-127)||(17606361-17606449)
chr6 (40-141)||(17579109-17579210)
chr6 (40-141)||(17573683-17573784)
chr6 (14-131)||(21630109-21630226)
chr6 (14-127)||(10577251-10577364)
chr6 (14-206)||(20883035-20883227)
chr6 (35-174)||(13937678-13937817)
chr6 (14-208)||(14372993-14373187)
chr6 (14-115)||(33185473-33185574)
[»] chr7 (10 HSPs)
chr7 (14-208)||(47876927-47877121)
chr7 (14-208)||(235439-235635)
chr7 (14-208)||(11277254-11277448)
chr7 (14-208)||(37919488-37919682)
chr7 (14-208)||(17720579-17720773)
chr7 (14-208)||(29967919-29968113)
chr7 (14-175)||(4938130-4938291)
chr7 (39-127)||(18532653-18532741)
chr7 (39-103)||(25619508-25619572)
chr7 (39-103)||(37254807-37254871)
[»] chr5 (23 HSPs)
chr5 (14-209)||(28535677-28535872)
chr5 (14-209)||(35983793-35983988)
chr5 (14-209)||(42928074-42928269)
chr5 (15-208)||(23238328-23238521)
chr5 (14-208)||(30732316-30732510)
chr5 (14-208)||(12825143-12825337)
chr5 (30-208)||(8227970-8228148)
chr5 (14-208)||(27117163-27117357)
chr5 (14-175)||(42513697-42513858)
chr5 (44-209)||(19255154-19255320)
chr5 (14-151)||(31641513-31641649)
chr5 (39-141)||(25857451-25857553)
chr5 (14-131)||(27767063-27767180)
chr5 (14-141)||(8300184-8300311)
chr5 (14-127)||(33385376-33385489)
chr5 (98-209)||(12820035-12820146)
chr5 (14-127)||(10776789-10776903)
chr5 (14-145)||(26072899-26073030)
chr5 (35-174)||(33169636-33169775)
chr5 (16-202)||(27165956-27166142)
chr5 (14-103)||(18359094-18359183)
chr5 (135-169)||(27795466-27795500)
chr5 (42-151)||(18089791-18089900)
[»] chr4 (16 HSPs)
chr4 (14-209)||(7403856-7404051)
chr4 (14-208)||(1828542-1828736)
chr4 (14-208)||(15740165-15740359)
chr4 (14-208)||(19755208-19755405)
chr4 (14-208)||(19784401-19784598)
chr4 (14-208)||(47685897-47686091)
chr4 (14-175)||(13270893-13271054)
chr4 (14-175)||(23642593-23642754)
chr4 (14-155)||(47418801-47418942)
chr4 (14-145)||(11587200-11587331)
chr4 (39-127)||(45472736-45472824)
chr4 (40-148)||(55725714-55725822)
chr4 (14-127)||(12697838-12697951)
chr4 (39-106)||(8361146-8361213)
chr4 (40-103)||(20002774-20002837)
chr4 (35-170)||(46145657-46145792)
[»] chr3 (22 HSPs)
chr3 (14-208)||(34332817-34333011)
chr3 (14-209)||(40930530-40930725)
chr3 (14-175)||(2364254-2364415)
chr3 (14-207)||(19920231-19920424)
chr3 (14-208)||(7312720-7312914)
chr3 (14-155)||(10323573-10323714)
chr3 (49-194)||(7032276-7032421)
chr3 (34-208)||(26771011-26771185)
chr3 (14-127)||(29523747-29523860)
chr3 (14-127)||(11203844-11203957)
chr3 (14-178)||(15312557-15312721)
chr3 (14-172)||(2755822-2755980)
chr3 (14-127)||(12342228-12342340)
chr3 (30-179)||(17097894-17098043)
chr3 (14-127)||(33496572-33496685)
chr3 (39-103)||(35214398-35214462)
chr3 (35-174)||(963186-963325)
chr3 (43-127)||(36801106-36801190)
chr3 (50-141)||(7031055-7031146)
chr3 (39-97)||(19890733-19890791)
chr3 (35-168)||(3140836-3140969)
chr3 (27-148)||(16178952-16179073)
[»] chr8 (17 HSPs)
chr8 (14-208)||(13396332-13396526)
chr8 (14-208)||(41665371-41665565)
chr8 (14-209)||(9922544-9922739)
chr8 (18-208)||(32266508-32266698)
chr8 (14-175)||(7924363-7924524)
chr8 (14-182)||(8299773-8299941)
chr8 (14-208)||(172047-172241)
chr8 (14-208)||(13200067-13200261)
chr8 (14-141)||(20824307-20824434)
chr8 (39-127)||(17699507-17699595)
chr8 (14-127)||(37434157-37434270)
chr8 (14-105)||(2170389-2170480)
chr8 (75-208)||(2529830-2529963)
chr8 (44-179)||(5181643-5181778)
chr8 (39-106)||(43270496-43270563)
chr8 (62-180)||(34137013-34137131)
chr8 (135-169)||(13879610-13879644)
[»] chr2 (9 HSPs)
chr2 (14-209)||(41206959-41207154)
chr2 (14-183)||(4552138-4552307)
chr2 (39-208)||(15917598-15917767)
chr2 (40-208)||(12645480-12645648)
chr2 (44-181)||(17764994-17765131)
chr2 (14-208)||(28252664-28252858)
chr2 (39-101)||(10999978-11000040)
chr2 (39-127)||(14439777-14439865)
chr2 (14-208)||(38604376-38604570)
[»] chr1 (9 HSPs)
chr1 (14-208)||(51052424-51052618)
chr1 (14-208)||(11909107-11909301)
chr1 (14-168)||(35541033-35541187)
chr1 (14-175)||(6050580-6050741)
chr1 (14-208)||(47623079-47623271)
chr1 (39-141)||(16917836-16917938)
chr1 (39-104)||(43388415-43388480)
chr1 (14-90)||(28351776-28351852)
chr1 (39-103)||(37191237-37191301)
[»] scaffold0472 (1 HSPs)
scaffold0472 (14-208)||(3196-3390)
[»] scaffold0369 (1 HSPs)
scaffold0369 (14-208)||(11207-11401)
[»] scaffold0034 (1 HSPs)
scaffold0034 (14-175)||(105845-106006)


Alignment Details
Target: chr6 (Bit Score: 175; Significance: 2e-94; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 24767426 - 24767620
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  24767426 gacatcacaggagcagccctagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttgacgacttcttagg 24767525  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggcatgttgaagatgt 208  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  24767526 gatcggttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggaacgttgaagatgt 24767620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 18651236 - 18651431
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||    
T  18651236 gacatcacaggagcagccccagttagatcaaaatatggagttaatttggcataaacaggttcctctcaaagtctctatccttgcttggcgacttctgagg 18651335  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggcatgttgaagatgtc 209  Q
    |||| ||||||||||||||||||||||| ||| ||||| |||||||||||||| |||||||||||||| | ||| ||||||   ||||||||||||    
T  18651336 gatcggttacctacaaaaaataatttggaaaaccgtgggattttacctttggatgcgcggttgtgtgtctctggatgcgggaccgttgaagatgtc 18651431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 14 - 208
Target Start/End: Complemental strand, 2553775 - 2553581
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    ||||||||| ||||||||||||||||| || |||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||| | |      
T  2553775 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 2553676  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggcatgttgaagatgt 208  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||| || ||| | |||||||||||    
T  2553675 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgt 2553581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 37 - 208
Target Start/End: Complemental strand, 12734240 - 12734069
Alignment:
Q  37 tacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaataa 136  Q
    ||||||| |||||||| ||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||| |||||||||||||  |||    
T  12734240 tacatcataatatggatttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaa 12734141  T
Q  137 tttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggcatgttgaagatgt 208  Q
    ||||| ||  ||||||||| || || |||||| |||||| ||||||| | | || ||| |||| ||||||||    
T  12734140 tttggtaacccgtggcattctatctctggaggagcggttatgtgtttctagatgtgggaatgtcgaagatgt 12734069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 156
Target Start/End: Complemental strand, 21168337 - 21168194
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    ||||||||||||||||||||||||||| || |||||||||||||||| ||||||| |||||||| ||||||| |||||||| |||||| ||||| |        
T  21168337 gacatcacaggagcagccccagttacaccataatatggagttaatttggcataaataggttcctctcaaagtatctatcctagcttggagacttttgcaa 21168238  T
Q  114 gatcagttacctac-aaaaaataatttggcaaatcgtggcattt 156  Q
    ||||  |||||||| |||||| || |||||||| ||||||||||    
T  21168237 gatcgattacctacaaaaaaaaaaattggcaaaccgtggcattt 21168194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 14 - 181
Target Start/End: Original strand, 15958815 - 15958982
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    |||||||||||| || |  |||||||||| ||||||| ||||||| | |||||||||||||||| | ||||||||||| ||||||||||| ||| | |||    
T  15958815 gacatcacaggaacaacttcagttacatccaaatatgaagttaatatggcataaacaggttcctcttaaagtctctattcttgcttggcggcttttgagg 15958914  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgt 181  Q
    ||||| |||||||| |||   ||||||||||| | ||| ||  | |||||||||| || |||||||||    
T  15958915 gatcatttacctacgaaagcaaatttggcaaaccatggtatcattcctttggaggtgcagttgtgtgt 15958982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 39 - 127
Target Start/End: Original strand, 17606361 - 17606449
Alignment:
Q  39 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctac 127  Q
    |||||||||||||||||||||| |||||||||||||||| | ||||| ||||||||||||||||||||  | |||||||| ||||||||    
T  17606361 catcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcatttacctac 17606449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 40 - 141
Target Start/End: Original strand, 17579109 - 17579210
Alignment:
Q  40 atcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaataattt 139  Q
    ||||||||||||||||||||| |||||||||||||||| | ||||| ||||||||||||||||||||  | |||||||  |||||||| |||  ||||||    
T  17579109 atcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcgcttacctactaaatctaattt 17579208  T
Q  140 gg 141  Q
    ||    
T  17579209 gg 17579210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 40 - 141
Target Start/End: Original strand, 17573683 - 17573784
Alignment:
Q  40 atcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaataattt 139  Q
    ||||||||||||||||||||| |||||||||||||||| | ||||  ||||||||||||||||||||  | |||||||  |||||||| |||  ||||||    
T  17573683 atcaaaatatggagttaatttggcataaacaggttcctttaaaagattctatccttgcttggcgactgttgagggatcgcttacctactaaatctaattt 17573782  T
Q  140 gg 141  Q
    ||    
T  17573783 gg 17573784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 14 - 131
Target Start/End: Original strand, 21630109 - 21630226
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    |||||||||||| || || ||  | |||||||||||||||||||||| |||||| ||||||||| | ||||| |||||||||| |||||||||  | |||    
T  21630109 gacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaccaggttcctttaaaagtttctatccttgtttggcgactattgagg 21630208  T
Q  114 gatcagttacctacaaaa 131  Q
    ||||  ||||||||||||    
T  21630209 gatcgtttacctacaaaa 21630226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 127
Target Start/End: Original strand, 10577251 - 10577364
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    |||||||||||| || || ||  | ||||||||||| |||||||||| |||||||||||||||| | ||||| | ||||||||||||||||||  | |||    
T  10577251 gacatcacaggaacaacctcatgttcatcaaaatatagagttaatttggcataaacaggttcctttaaaagtttatatccttgcttggcgactgttgagg 10577350  T
Q  114 gatcagttacctac 127  Q
    ||||  ||||||||    
T  10577351 gatcgtttacctac 10577364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 14 - 206
Target Start/End: Original strand, 20883035 - 20883227
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    |||||||||||| || || ||  | |||||||||||||||||||| | ||||||| |||||||| | ||||| ||||||||||||||||| ||  | |||    
T  20883035 gacatcacaggaacaaccacatgttcatcaaaatatggagttaatctggcataaataggttcctttaaaagtttctatccttgcttggcggctgttgagg 20883134  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggcatgttgaagat 206  Q
    |||   |||||||| |||   || |||| | ||||||||||| || || ||||||| ||||| |||||    || || |||||||||||||||    
T  20883135 gattgtttacctactaaatcgaacttggtagatcgtggcattatatctgtggaggctcggttttgtgtcacgggatgtgggcatgttgaagat 20883227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 35 - 174
Target Start/End: Complemental strand, 13937817 - 13937678
Alignment:
Q  35 gttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaat 134  Q
    ||||||||||||||||||||| |||| ||| |||||||| ||| | ||||| |||||  ||||||||||  | || ||||| | ||||||||| ||| |     
T  13937817 gttacatcaaaatatggagttgatttggcacaaacaggtgcctttgaaagtgtctatttttgcttggcgtttgctgagggaccggttacctactaaacaa 13937718  T
Q  135 aatttggcaaatcgtggcattttacctttggaggcgcggt 174  Q
    |||||||||| | ||||  | ||| ||||||||| |||||    
T  13937717 aatttggcaagttgtggggtcttatctttggaggagcggt 13937678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 14372993 - 14373187
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    |||||| ||||| ||||| |||||||||     |||||| ||||||| |||||||||||| ||| | ||||| ||||| ||||||||||  ||| | |||    
T  14372993 gacatcccaggaacagcctcagttacattcttctatggatttaatttggcataaacaggtacctctaaaagtatctattcttgcttggcagcttttgagg 14373092  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggcatgttgaagatgt 208  Q
     |    |||||||| |||   ||||||||||| ||||||||| |  || |||||| ||||||||||||||  ||||  ||||||| |||||||||    
T  14373093 aacggcttacctacgaaaggaaatttggcaaaccgtggcattatttctatggaggggcggttgtgtgtttccggttatgggcatgatgaagatgt 14373187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 33185574 - 33185473
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    ||||||| ||||||| | ||| |||||| ||||  |||| ||||||| ||||||||| || ||| | |||||||||||  ||||||| ||| | ||||||    
T  33185574 gacatcataggagcatctccatttacattaaaacttggaattaatttggcataaacatgtccctctgaaagtctctatttttgcttgacgaatgcttagg 33185475  T
Q  114 ga 115  Q
    ||    
T  33185474 ga 33185473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 14 - 208
Target Start/End: Complemental strand, 47877121 - 47876927
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| ||     
T  47877121 gacatcacaggagcagccccagttacatcaaaatagggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgaga 47877022  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggcatgttgaagatgt 208  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||| | |||||||||||    
T  47877021 gatcagttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgcgggaacgttgaagatgt 47876927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 235439 - 235635
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||| |||    
T  235439 gacatcacaggagcagccccagttacatcaaaatatggagttaatttggcataaacaggttcatctcaaagtctctatccttgcttggcgacttctgagg 235538  T
Q  114 gatcagttacctac--aaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggcatgttgaagatgt 208  Q
    |||| |||||||||  ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| | | |||||||||||    
T  235539 gatcggttacctacaaaaaaaatcatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggttgcgagaacgttgaagatgt 235635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 11277254 - 11277448
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    ||||||||||||||| ||||||||||| || |||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||| | ||     
T  11277254 gacatcacaggagcaaccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaga 11277353  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggcatgttgaagatgt 208  Q
    |||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| || ||| | |||||||||||    
T  11277354 gatcggttacctacgaaaaataatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgt 11277448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 14 - 208
Target Start/End: Complemental strand, 37919682 - 37919488
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    ||||||||||||||||||||| ||||||||  ||||| ||||||||| | |||||||||||||| ||||||| |||||||||||||||||||| || ||     
T  37919682 gacatcacaggagcagccccaattacatcatcatatgaagttaatttggtataaacaggttcctctcaaagtatctatccttgcttggcgactcctgaga 37919583  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggcatgttgaagatgt 208  Q
    |||  ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| | |||| ||| | |||||||||||    
T  37919582 gattggttacctacaaaaaataatttggcaaaccgttgcattttacctttggaggcgcggttgtgtgtttctagttgtgggaacgttgaagatgt 37919488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 14 - 208
Target Start/End: Complemental strand, 17720773 - 17720579
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    |||||||||||||||||| || |||||||||||  |||||||||||| ||||| |||||||||| ||||||| ||||||||||| ||||||||||| |||    
T  17720773 gacatcacaggagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttcctctcaaagtttctatccttgcatggcgacttctgagg 17720674  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggcatgttgaagatgt 208  Q
    |||| ||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||| ||||||||| | |||| ||| |||  ||||||||    
T  17720673 gatcggttacctacaaaagataatttggcaaaccgtggcattttacctctggaggcgcggatgtgtgtttctagttgtgggaatgaagaagatgt 17720579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 14 - 208
Target Start/End: Complemental strand, 29968113 - 29967919
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    ||||||||||||||| ||||||||||| || | |||||||||||||| |||||||||||||||| ||||||| ||||||||||||||  ||||| | ||     
T  29968113 gacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttgaggacttttgaga 29968014  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggcatgttgaagatgt 208  Q
    |||| ||||||||| |||| |||||||||||| | ||||||||||||||||||||||||||||||||||| ||| || ||| | |||||||||||    
T  29968013 gatcggttacctacgaaaagtaatttggcaaaccatggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgt 29967919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 14 - 175
Target Start/End: Original strand, 4938130 - 4938291
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    ||||||||||||||||||||||||||| || ||| |||| ||||||| |||||||||||| ||| ||||||||||||||||||||||||||||  | |||    
T  4938130 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 4938229  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggtt 175  Q
    |||| |||||||||||||  |||||||||||||||||||||| || || |||||| ||||||    
T  4938230 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggtt 4938291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 39 - 127
Target Start/End: Complemental strand, 18532741 - 18532653
Alignment:
Q  39 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctac 127  Q
    |||||||||||||||||||| | |||||||||||||||| | ||||| | ||||||||||||||||||  | |||||||  ||||||||    
T  18532741 catcaaaatatggagttaatctcgcataaacaggttcctttaaaagtttatatccttgcttggcgactgttgagggatcgtttacctac 18532653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 25619572 - 25619508
Alignment:
Q  39 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcg 103  Q
    |||||||||||||||||||| | |||||||||||||||| | ||||| |||||||||||||||||    
T  25619572 catcaaaatatggagttaatatggcataaacaggttcctttaaaagtttctatccttgcttggcg 25619508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 37254871 - 37254807
Alignment:
Q  39 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcg 103  Q
    |||||||||||||||||||| | ||||||||||||| || | ||||| || ||||||||||||||    
T  37254871 catcaaaatatggagttaatctggcataaacaggttactttaaaagtttcaatccttgcttggcg 37254807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 136; Significance: 4e-71; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 28535677 - 28535872
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||| ||||| |||||||||| ||||||| ||||||||||||||||||||||| |||    
T  28535677 gacatcacaggagcagcctcagttacatcaaaacatggagttaatttggcatacacaggttcctctcaaagtttctatccttgcttggcgacttctgagg 28535776  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggcatgttgaagatgtc 209  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||| |||||| ||| |||| |||||||||    
T  28535777 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagatgtgtgtttctggttgtgggaatgtagaagatgtc 28535872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 35983793 - 35983988
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||| || || |||||||||| ||||||| ||||||||||||||||||||||| |||    
T  35983793 gacatcacaggagcagcctcagttacatcaaaacatggagttaatttggcttacacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 35983892  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggcatgttgaagatgtc 209  Q
     ||| ||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||| ||| |||| |||| ||||    
T  35983893 aatcggttacctacaaaaaataatttggcaaaccatgacattttacctttggaggcgcggttgtgtgtttttggttgtgggaatgtagaagttgtc 35983988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 14 - 209
Target Start/End: Complemental strand, 42928269 - 42928074
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    |||||| ||||| |||||||||||||||| ||||||||||||||||| | |||||||||||||| |||||||||||||||||| |||||| ||||| |||    
T  42928269 gacatcgcaggaacagccccagttacatccaaatatggagttaatttggtataaacaggttcctctcaaagtctctatccttgtttggcggcttctgagg 42928170  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggcatgttgaagatgtc 209  Q
    |||| |||| ||||||||||||||||| ||||  ||||||||||||| ||||||| |||||||||||| | ||| |||||| | ||||||||||||    
T  42928169 gatcggttaactacaaaaaataatttgacaaactgtggcattttacccttggaggtgcggttgtgtgtctctggatgcgggaacgttgaagatgtc 42928074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 15 - 208
Target Start/End: Complemental strand, 23238521 - 23238328
Alignment:
Q  15 acatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttaggg 114  Q
    |||||||||||||| ||||||||||| || |||||||||||||||| ||||||| |||||||| ||||||| ||||||||||||||| ||||| | || |    
T  23238521 acatcacaggagcaaccccagttacaccataatatggagttaatttggcataaataggttcctctcaaagtttctatccttgcttggagacttttgagag 23238422  T
Q  115 atcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggcatgttgaagatgt 208  Q
    ||| ||||||||| |||| |||||||||||| |||||||||||| |||||||||||||||||||||||| ||| || ||| | |||||||||||    
T  23238421 atcggttacctacgaaaagtaatttggcaaaccgtggcattttagctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgt 23238328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 30732316 - 30732510
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    ||||||||||||||||||||||||||| || |||||||| ||||||| |||||||||||||||| ||||||| |||||| |||||||||||||||| |||    
T  30732316 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggttcctctcaaagtatctatctttgcttggcgacttctgagg 30732415  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggcatgttgaagatgt 208  Q
    |||| |||||||||||||  |||||||||||||||||||||| || || |||||| |||||| ||||||| ||| || |||  ||| ||||||||    
T  30732416 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgt 30732510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 14 - 208
Target Start/End: Complemental strand, 12825337 - 12825143
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    ||||||||||||||||||||||||||| || |||||||| ||||||| ||||||||| |||||| ||||||| | ||||||||||||||||||||| |||    
T  12825337 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaagttcctctcaaagtatgtatccttgcttggcgacttctgagg 12825238  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggcatgttgaagatgt 208  Q
    |||| |||||||||||||  |||||||||||||||||||||| || || |||||| |||||| ||||||| ||| || |||  ||| ||||||||    
T  12825237 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgt 12825143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 30 - 208
Target Start/End: Complemental strand, 8228148 - 8227970
Alignment:
Q  30 ccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaa 129  Q
    ||||||||||| || ||||||||||||||||  ||||||||||||||| ||||||| ||||||||||||||| ||||| | || |||| ||||||||| |    
T  8228148 ccccagttacaccataatatggagttaatttgacataaacaggttcctctcaaagtatctatccttgcttggagacttttgagagatcggttacctacga 8228049  T
Q  130 aaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggcatgttgaagatgt 208  Q
    ||| |||||||||||| |||| |||||||||||||||||||||||||||||||| ||| || | | | |||||||||||    
T  8228048 aaagtaatttggcaaaccgtgacattttacctttggaggcgcggttgtgtgtttctggatgtgagaacgttgaagatgt 8227970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 27117163 - 27117357
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    ||||||||||||||||  ||||||||| || |||||||| ||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| |||    
T  27117163 gacatcacaggagcagatccagttacaccataatatggacttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 27117262  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggcatgttgaagatgt 208  Q
    || | |||||| ||||||  |||||||| ||| ||||||||| || || |||||| |||||| ||||||| ||| || ||| |||| ||||||||    
T  27117263 gaccggttacccacaaaacttaatttggtaaaccgtggcattctatctatggaggagcggttatgtgtttctggctgtgggaatgtcgaagatgt 27117357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 14 - 175
Target Start/End: Complemental strand, 42513858 - 42513697
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    ||||||||||||||||||||||||||| || ||| |||| ||||||| |||||||||||| ||| ||||||||||||||||||||||||||||  | |||    
T  42513858 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 42513759  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggtt 175  Q
    |||| |||||||||||||  ||||||||||||||||| |||| || || |||||| ||||||    
T  42513758 gatcggttacctacaaaacttaatttggcaaatcgtgacattctatctgtggaggagcggtt 42513697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 44 - 209
Target Start/End: Original strand, 19255154 - 19255320
Alignment:
Q  44 aaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaataatttggca 143  Q
    ||||||||||||||||| |||||||||| || || ||||||| |||||||||||||||||  |||| ||||||| |||||||||||||||||||||||||    
T  19255154 aaatatggagttaatttggcataaacagatttctctcaaagtatctatccttgcttggcggtttctgagggatcggttacctacaaaaaataatttggca 19255253  T
Q  144 aatcgtggcattttacctttggag-gcgcggttgtgtgtttttggttgcgggcatgttgaagatgtc 209  Q
    ||| |||||||| | || |||||| ||||||||||||||   ||| |||||||| ||||||||||||    
T  19255254 aattgtggcattattcccttggagcgcgcggttgtgtgtcactggatgcgggcacgttgaagatgtc 19255320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 151
Target Start/End: Complemental strand, 31641649 - 31641513
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    |||||||||||||||||| || ||||||||||| ||||||||||||| ||||| |||||||||| | ||||| ||||||||||| ||| |||| || |||    
T  31641649 gacatcacaggagcagcctcacttacatcaaaacatggagttaatttggcatacacaggttcctct-aaagtttctatccttgcatggagactactgagg 31641551  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtgg 151  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  31641550 gatcggttacctacaaaaaataatttggcaaaccgtgg 31641513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 39 - 141
Target Start/End: Original strand, 25857451 - 25857553
Alignment:
Q  39 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaataatt 138  Q
    |||||||||||||||||||||| |||||||||||||||| | ||||| ||||||||||||||||||||  | |||||||  |||||||| |||  |||||    
T  25857451 catcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcgcttacctactaaatctaatt 25857550  T
Q  139 tgg 141  Q
    |||    
T  25857551 tgg 25857553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 27767180 - 27767063
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    |||||||||||| || || ||  | |||||||||||||||||||||| |||||||||||||||| | ||||| | ||||||||||||||||||  | |||    
T  27767180 gacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttcctttaaaagtttatatccttgcttggcgactgttgagg 27767081  T
Q  114 gatcagttacctacaaaa 131  Q
    ||||  ||||||||||||    
T  27767080 gatcgtttacctacaaaa 27767063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 141
Target Start/End: Original strand, 8300184 - 8300311
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    |||||||||||| || || ||  | |||||||||||||||||||||| |||||||||||||||| | ||||| |||||||||| |||||||||  | |||    
T  8300184 gacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgtttggcgactgttgagg 8300283  T
Q  114 gatcagttacctacaaaaaataatttgg 141  Q
    ||||  |||||||| |||  ||||||||    
T  8300284 gatcgcttacctactaaatctaatttgg 8300311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 14 - 127
Target Start/End: Original strand, 33385376 - 33385489
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    |||||||||||| || || ||  | |||||||||||||||||||||| |||||||||||||||  | ||||| ||||||||||||||||||||  | |||    
T  33385376 gacatcacaggaacaacctcatattcatcaaaatatggagttaatttggcataaacaggttcccttaaaagtttctatccttgcttggcgactgttgagg 33385475  T
Q  114 gatcagttacctac 127  Q
    ||||  ||||||||    
T  33385476 gatcgtttacctac 33385489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 98 - 209
Target Start/End: Original strand, 12820035 - 12820146
Alignment:
Q  98 ttggcgacttcttagggatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggcat 197  Q
    |||||||||| | ||||||| |||||||||||||  |||||||||||||||||||||| || || |||||| |||||| ||||||| ||| || |||  |    
T  12820035 ttggcgacttatgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgtttctggatgtgggatt 12820134  T
Q  198 gttgaagatgtc 209  Q
    || |||||||||    
T  12820135 gtcgaagatgtc 12820146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 14 - 127
Target Start/End: Complemental strand, 10776903 - 10776789
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaa-atatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttag 112  Q
    |||||||||||| || || ||  | ||||||| ||||||||||||||| |||||||||||||||  | ||||| |||||||||||||||||||| || ||    
T  10776903 gacatcacaggaacaacctcatgttcatcaaatatatggagttaatttggcataaacaggttcccttaaaagtttctatccttgcttggcgactgctgag 10776804  T
Q  113 ggatcagttacctac 127  Q
    |||||  ||||||||    
T  10776803 ggatcgtttacctac 10776789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 14 - 145
Target Start/End: Complemental strand, 26073030 - 26072899
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    |||||| ||||| |||||||| || ||||||||| |||||||||||| ||||||| | |||||| | |||||| ||||| ||| |||||||||  | |||    
T  26073030 gacatcgcaggaacagccccatttgcatcaaaatttggagttaatttggcataaatatgttcctttgaaagtccctatctttgtttggcgactgttgagg 26072931  T
Q  114 gatcagttacctacaaaaaataatttggcaaa 145  Q
    ||||  |||||||| ||| | || ||||||||    
T  26072930 gatcgattacctactaaagagaaattggcaaa 26072899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 35 - 174
Target Start/End: Complemental strand, 33169775 - 33169636
Alignment:
Q  35 gttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaat 134  Q
    ||||||||||||||||||||| |||| ||| |||||||| ||| | ||||| |||||  ||||||||||  | || ||||| | ||||||||| ||| |     
T  33169775 gttacatcaaaatatggagttgatttggcacaaacaggtgcctttgaaagtgtctatttttgcttggcgtttgctgagggaccggttacctactaaacaa 33169676  T
Q  135 aatttggcaaatcgtggcattttacctttggaggcgcggt 174  Q
    |||||||||| ||||||  | ||| ||||||||| |||||    
T  33169675 aatttggcaagtcgtggggtcttatctttggaggagcggt 33169636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 27165956 - 27166142
Alignment:
Q  16 catcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttaggga 115  Q
    |||||||||| || ||| | ||||||||||||||||| ||||||| |||  ||||||| ||| | |||||||||||| | | |||||||   || | |||    
T  27165956 catcacaggaacaacccaatttacatcaaaatatggaattaatttggcaccaacaggtacctctaaaagtctctatcttcgtttggcgaacgctgaagga 27166055  T
Q  116 tcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggcatgttga 202  Q
    ||  ||||||| ||||   |||||||||| |||||| ||| | |||||||| |||| |||||||||   |||||  |||||||||||    
T  27166056 tcgtttacctataaaagcaaatttggcaagtcgtggaattcttcctttggaagcgcagttgtgtgtggctggttatgggcatgttga 27166142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 18359094 - 18359183
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcg 103  Q
    |||||||||||| || || ||  | |||||||||||||||||||| | |||||||||||||||| | ||||| || ||||||||||||||    
T  18359094 gacatcacaggaacaacctcatgttcatcaaaatatggagttaatctagcataaacaggttcctttaaaagtttcaatccttgcttggcg 18359183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 169
Target Start/End: Complemental strand, 27795500 - 27795466
Alignment:
Q  135 aatttggcaaatcgtggcattttacctttggaggc 169  Q
    |||||||||||||||||||||||||| ||||||||    
T  27795500 aatttggcaaatcgtggcattttaccgttggaggc 27795466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 151
Target Start/End: Original strand, 18089791 - 18089900
Alignment:
Q  42 caaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaataatttgg 141  Q
    |||||| |||||||||||| ||| |||||||| ||  | |||||||||||| ||||||| |||||  | || ||||  |||||||| |   | |||||||    
T  18089791 caaaatttggagttaatttggcacaaacaggtaccgttgaaagtctctatctttgcttgacgactattgagagatcgtttacctactaggcaaaatttgg 18089890  T
Q  142 caaatcgtgg 151  Q
    ||||||||||    
T  18089891 caaatcgtgg 18089900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 136; Significance: 4e-71; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 14 - 209
Target Start/End: Complemental strand, 7404051 - 7403856
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||| | ||||||||||||||||||||||||||||||| |||    
T  7404051 gacatcacaggagcagccccagttacatcaaaatatgaagttaatttggcataaacaagttcatttcaaagtctctatccttgcttggcgacttctgagg 7403952  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggcatgttgaagatgtc 209  Q
    |||| ||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||| | ||| |||||| | ||||||||||||    
T  7403951 gatcggttacctacaaaaaagaatttggcaaaccgtggcattttacgtttggaggcgcggttgtgtgtctctggatgcgggaacgttgaagatgtc 7403856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 1828542 - 1828736
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||| ||||  |  |     
T  1828542 gacatcacaggagcagccccagttacatcataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggagactattgcga 1828641  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggcatgttgaagatgt 208  Q
    |||  |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||| || ||| |||||||||||||    
T  1828642 gataggttacctacaaaaactaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgt 1828736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 14 - 208
Target Start/End: Complemental strand, 15740359 - 15740165
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    ||||||| ||||||||||||||||||| || |||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||| ||||| |  |     
T  15740359 gacatcataggagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggagacttttgcga 15740260  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggcatgttgaagatgt 208  Q
    |||| |||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||| ||| || ||| ||||| |||||||    
T  15740259 gatcggttacctacaaaaaataatttgacaagccgtggcattttacctttggaggcgcggttgtgtgtttctgggtgtgggaatgttaaagatgt 15740165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 14 - 208
Target Start/End: Complemental strand, 19755405 - 19755208
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    ||||||||| ||||||||||| || |||||  ||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||| || ||     
T  19755405 gacatcacaagagcagccccaatttcatcatcatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgactcctgaga 19755306  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcatt---ttacctttggaggcgcggttgtgtgtttttggttgcgggcatgttgaagatgt 208  Q
    |||| ||||||||||||||||||||||||||| |||| ||||   |||||||||||||||||||||||||||| ||| || |||   |||||||||||    
T  19755305 gatcggttacctacaaaaaataatttggcaaaccgtgacattttattacctttggaggcgcggttgtgtgtttctggatgtgggagcgttgaagatgt 19755208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 19784401 - 19784598
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    ||||||||| ||||||||||| || |||||  ||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||| || ||     
T  19784401 gacatcacaagagcagccccaatttcatcatcatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgactcctgaga 19784500  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcatt---ttacctttggaggcgcggttgtgtgtttttggttgcgggcatgttgaagatgt 208  Q
    |||| ||||||||||||||||||||||||||| |||| ||||   |||||||||||||||||||||||||||| ||| || |||   |||||||||||    
T  19784501 gatcggttacctacaaaaaataatttggcaaaccgtgacattttattacctttggaggcgcggttgtgtgtttctggatgtgggagcgttgaagatgt 19784598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 47685897 - 47686091
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    ||||||||| ||||||||| ||||||| || ||| |||| |||||||  ||||||||||||||| ||||||| ||||||||||||||||||||| | ||     
T  47685897 gacatcacaagagcagcccaagttacaccataatctggacttaatttgacataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaga 47685996  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggcatgttgaagatgt 208  Q
    |||| ||||||||||||| ||||||||||||| |||||||||||| || |||||| |||||| ||||||| ||| || ||| |||| ||||||||    
T  47685997 gatcggttacctacaaaacataatttggcaaaccgtggcattttatctgtggaggagcggttatgtgtttctggatgtgggaatgtcgaagatgt 47686091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 14 - 175
Target Start/End: Original strand, 13270893 - 13271054
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    ||||||||||||||||||||||||||| || ||| |||| ||||||| |||||||||||| ||| ||||||||||||||||||||||||||||  | |||    
T  13270893 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 13270992  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggtt 175  Q
    |||| |||||||||||||  |||||||||||||||||||||| || || |||||| ||||||    
T  13270993 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggtt 13271054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 14 - 175
Target Start/End: Original strand, 23642593 - 23642754
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    ||||||||||||||||||||||||||| || ||| |||| ||||||| |||||||||||| ||| ||||||||||||||||||||||||||||  | |||    
T  23642593 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 23642692  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggtt 175  Q
    |||| |||||||||||||  |||||||||||||||||||||| || || |||||| ||||||    
T  23642693 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggtt 23642754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 14 - 155
Target Start/End: Complemental strand, 47418942 - 47418801
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    ||||||||||||||||||||||||||| || | |||||| ||||||| |||||||||||| ||| ||||||| |||||||||||||||||||| || |||    
T  47418942 gacatcacaggagcagccccagttacaccatagtatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgactactgagg 47418843  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcatt 155  Q
    |||| |||||||||||||  ||||||||||| ||||||||||    
T  47418842 gatcggttacctacaaaacttaatttggcaactcgtggcatt 47418801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 145
Target Start/End: Original strand, 11587200 - 11587331
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    |||||||||||| ||||| ||||| |||| |  |||||||||||||| ||||||| || | ||||||||||| ||||| ||||||||||| ||||| |||    
T  11587200 gacatcacaggaacagcctcagttgcatccatctatggagttaatttggcataaatagatacctatcaaagtatctattcttgcttggcggcttctgagg 11587299  T
Q  114 gatcagttacctacaaaaaataatttggcaaa 145  Q
     |||  |||||||| ||| | |||||||||||    
T  11587300 aatcgtttacctacgaaagaaaatttggcaaa 11587331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 39 - 127
Target Start/End: Original strand, 45472736 - 45472824
Alignment:
Q  39 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctac 127  Q
    |||||||||||||||||||||| |||||||||||||||| | ||||| |||||||||| |||||||||  | |||||||  ||||||||    
T  45472736 catcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgtttggcgactgttgagggatcgtttacctac 45472824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 40 - 148
Target Start/End: Original strand, 55725714 - 55725822
Alignment:
Q  40 atcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaataattt 139  Q
    ||||||||||||||||||||| ||||||||| |||||| | ||||| || |||||||||||||| ||  | |||||||  |||||||||||| | |||||    
T  55725714 atcaaaatatggagttaatttggcataaacaagttcctctaaaagtttcaatccttgcttggcggctattgagggatcgcttacctacaaaatacaattt 55725813  T
Q  140 ggcaaatcg 148  Q
    |||| ||||    
T  55725814 ggcagatcg 55725822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 127
Target Start/End: Complemental strand, 12697951 - 12697838
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    |||||||||||| || || ||  | |||||||||||| | ||||||| |||||||||||||||| | ||||| ||||||||||||||||||||  | |||    
T  12697951 gacatcacaggaacaacctcatgttcatcaaaatatgaaattaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagg 12697852  T
Q  114 gatcagttacctac 127  Q
    ||||  ||||||||    
T  12697851 gatcgtttacctac 12697838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 8361213 - 8361146
Alignment:
Q  39 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgact 106  Q
    |||||||||||||||||||||| |||||||||||||||  | ||||| |||||||||| |||||||||    
T  8361213 catcaaaatatggagttaatttggcataaacaggttcccttaaaagtttctatccttgtttggcgact 8361146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 40 - 103
Target Start/End: Complemental strand, 20002837 - 20002774
Alignment:
Q  40 atcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcg 103  Q
    ||||||||||||||||||||| |||||||||||||| | | ||||| |||||| ||||||||||    
T  20002837 atcaaaatatggagttaatttggcataaacaggttcttttaaaagtttctatcattgcttggcg 20002774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 170
Target Start/End: Complemental strand, 46145792 - 46145657
Alignment:
Q  35 gttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaat 134  Q
    ||||||||||||||||||||| |||| ||| ||| |||| ||| | ||||| |||||  ||||||||||  | || ||||| |  |||||||| ||| |     
T  46145792 gttacatcaaaatatggagttgatttggcacaaataggtgcctttgaaagtgtctatttttgcttggcgcttgctgagggaccgattacctactaaacaa 46145693  T
Q  135 aatttggcaaatcgtggcattttacctttggaggcg 170  Q
    |||||||||| ||||||  | ||| |||||||||||    
T  46145692 aatttggcaagtcgtggggtcttatctttggaggcg 46145657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 34332817 - 34333011
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||| |||||| ||     
T  34332817 gacatcacaggagcagccccagttacatcataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcaacttctgaga 34332916  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggcatgttgaagatgt 208  Q
    ||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| || ||| | |||||||||||    
T  34332917 gatcgattacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgt 34333011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 40930530 - 40930725
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    ||||||||||||||| || ||||| |||||||| ||||||||| |||  ||||||||||||||| ||||||| ||||||||||||||||||||| | |||    
T  40930530 gacatcacaggagcaacctcagttgcatcaaaacatggagttagtttgacataaacaggttcctctcaaagtatctatccttgcttggcgacttttgagg 40930629  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggcatgttgaagatgtc 209  Q
    |||  ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||| ||| | || |||||||||    
T  40930630 gattggttacctacaaaaaataatttggcaaaccgtggccttttacctttggaggcgcggttgtgtgtttctggttgtgggaacgtcgaagatgtc 40930725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 14 - 175
Target Start/End: Complemental strand, 2364415 - 2364254
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    ||||||||||||||||||||||||||| || |||||||| ||||||| |||||||||||| ||| ||||||| |||||||||||||||||||| || |||    
T  2364415 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgactactgagg 2364316  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggtt 175  Q
    |||| |||||||||||||  |||||||||||||||||||||| || || |||||| ||||||    
T  2364315 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggtt 2364254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 14 - 207
Target Start/End: Original strand, 19920231 - 19920424
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    ||||||||||||| ||||||||||||| ||  ||||||| ||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| |||    
T  19920231 gacatcacaggagaagccccagttacaccatcatatggacttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 19920330  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggcatgttgaagatg 207  Q
    |||| |||||||||||||  |||||||| |||||| |||||| || || |||||| |||||| ||||||| ||| || ||| |||| |||||||    
T  19920331 gatcggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggaatgtcgaagatg 19920424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 14 - 208
Target Start/End: Complemental strand, 7312914 - 7312720
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    ||||||||||||||||||||||||||| || |||||||| ||||||| |||||||||||| ||| ||||||| ||||||||||||||||||||  | |||    
T  7312914 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtacctctcaaagtatctatccttgcttggcgactaatgagg 7312815  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggcatgttgaagatgt 208  Q
    |||| |||||||||||||  |||||||||||||||||||||| |  || |||||| |||| | ||||||| ||| || |||  ||| ||||||||    
T  7312814 gatcggttacctacaaaacttaatttggcaaatcgtggcattctgtctgtggaggagcggctttgtgtttctggatgtgggattgtcgaagatgt 7312720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 14 - 155
Target Start/End: Original strand, 10323573 - 10323714
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    ||||||||||||||||||||||||||| || | |||||| ||||||| |||||||||||| ||| ||||||| |||||||||||||||||||| || |||    
T  10323573 gacatcacaggagcagccccagttacaccatagtatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgactactgagg 10323672  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcatt 155  Q
    |||| |||||||||||||  ||||||||||| ||||||||||    
T  10323673 gatcggttacctacaaaacttaatttggcaactcgtggcatt 10323714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 49 - 194
Target Start/End: Complemental strand, 7032421 - 7032276
Alignment:
Q  49 tggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaataatttggcaaatcg 148  Q
    |||||||  ||| ||| |||||||||||| ||||| | ||||||||||| ||||||||||| ||||||| ||||||||||||||| ||| |||| ||| |    
T  7032421 tggagttggtttggcacaaacaggttcctctcaaaatttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaattg 7032322  T
Q  149 tggcattttacctttggaggcgcggttgtgtgtttttggttgcggg 194  Q
    |||  ||||||||||||| ||||||| |||||| |  |||||||||    
T  7032321 tggtcttttacctttggatgcgcggtcgtgtgtctcaggttgcggg 7032276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 34 - 208
Target Start/End: Original strand, 26771011 - 26771185
Alignment:
Q  34 agttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaa 133  Q
    ||||||||| ||||||||||||||| | ||||||||||| |||| | ||||||||||| ||| ||||||| ||| | |||||||  |||||||| |||      
T  26771011 agttacatccaaatatggagttaatgtggcataaacaggctcctcttaaagtctctattcttacttggcggcttttgagggatcgtttacctacgaaagc 26771110  T
Q  134 taatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggcatgttgaagatgt 208  Q
     ||||||||||| ||||| ||  | |||||||||| || |||||||||   |||||| ||||| || ||||||||    
T  26771111 aaatttggcaaaccgtggtatcattcctttggaggtgcagttgtgtgtcactggttgtgggcacgtggaagatgt 26771185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 127
Target Start/End: Original strand, 29523747 - 29523860
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    |||||||||||| || || ||  | |||||||||||||||||||||| |||||||||||||||| | ||||| ||||||||||||||||||||  | |||    
T  29523747 gacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagg 29523846  T
Q  114 gatcagttacctac 127  Q
    ||||  ||||||||    
T  29523847 gatcgtttacctac 29523860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 14 - 127
Target Start/End: Complemental strand, 11203957 - 11203844
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    |||||||||||| || || ||  | |||||||||||||||||||||| |||||||||||||||| | ||||| ||||| ||||||||||||||  | |||    
T  11203957 gacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatacttgcttggcgactgttgagg 11203858  T
Q  114 gatcagttacctac 127  Q
    ||||  ||||||||    
T  11203857 gatcgtttacctac 11203844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 14 - 178
Target Start/End: Complemental strand, 15312721 - 15312557
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    |||||| ||||| ||  |||| |||||||||||| |||||||||||| |||||||||||| ||| | ||||||| |||  |||||||| |||| || |||    
T  15312721 gacatcgcaggaacatacccatttacatcaaaatttggagttaatttggcataaacaggtacctctaaaagtctatatatttgcttggtgactgctgagg 15312622  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtg 178  Q
     |||  || ||||  ||| | ||||||| ||||||||| ||| ||||  ||||||||||||||||    
T  15312621 aatcgtttgcctattaaagagaatttggaaaatcgtgggattataccaatggaggcgcggttgtg 15312557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 14 - 172
Target Start/End: Complemental strand, 2755980 - 2755822
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    |||||| ||||| || |||  ||||||||||||||||||||| |||| ||| |||||||| ||| | ||||| |||||  ||||||||||  | || |||    
T  2755980 gacatcgcaggaacaacccatgttacatcaaaatatggagttgatttggcacaaacaggtacctttgaaagtgtctatatttgcttggcgtttgctgagg 2755881  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcg 172  Q
    || | ||||||||| ||| | |||||||||| ||||||  | ||| |||||||||||||    
T  2755880 gaccggttacctactaaataaaatttggcaagtcgtggggtcttatctttggaggcgcg 2755822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 127
Target Start/End: Original strand, 12342228 - 12342340
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    |||||||||||| || || ||  | |||||||||||||||||||||| ||||||||||||| || | ||||| ||||||||||||||||||||  | |||    
T  12342228 gacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggtt-ctttaaaagtttctatccttgcttggcgactgttgagg 12342326  T
Q  114 gatcagttacctac 127  Q
    ||||  ||||||||    
T  12342327 gatcgtttacctac 12342340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 30 - 179
Target Start/End: Original strand, 17097894 - 17098043
Alignment:
Q  30 ccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaa 129  Q
    ||||| |||||||||||| |||||||||||| |||||||||||    | | |||||||||||| |||||| ||||||  | | ||||| ||||||||| |    
T  17097894 ccccatttacatcaaaatgtggagttaatttggcataaacaggcatatgtgaaagtctctatctttgcttagcgactgttgatggatcggttacctacta 17097993  T
Q  130 aaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgt 179  Q
    || | ||||||||||| ||||| ||| |  || ||||||| |||||||||    
T  17097994 aagaaaatttggcaaaccgtgggattatttctatggaggcacggttgtgt 17098043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 127
Target Start/End: Complemental strand, 33496685 - 33496572
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    |||||||||||| || || ||  | |||||| ||||||||||||||| |||||||||||||||| | ||||| |||||| |||||||||||||  | |||    
T  33496685 gacatcacaggaacaacctcatgttcatcaatatatggagttaatttggcataaacaggttcctttaaaagtttctatcattgcttggcgactgttgagg 33496586  T
Q  114 gatcagttacctac 127  Q
    ||||  ||||||||    
T  33496585 gatcgtttacctac 33496572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 35214398 - 35214462
Alignment:
Q  39 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcg 103  Q
    |||||||||||||||||||| | |||||||||||||||| | ||||| |||||||||| ||||||    
T  35214398 catcaaaatatggagttaatctggcataaacaggttcctttaaaagtttctatccttgtttggcg 35214462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 35 - 174
Target Start/End: Original strand, 963186 - 963325
Alignment:
Q  35 gttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaat 134  Q
    ||||||||||||||||||||| |||| ||| |||||||| ||| | ||||| |||||  ||||||||||  | || ||||| | ||||||||| ||| |     
T  963186 gttacatcaaaatatggagttgatttggcacaaacaggtgcctttgaaagtgtctatttttgcttggcgtttgctgagggaccggttacctactaaacaa 963285  T
Q  135 aatttggcaaatcgtggcattttacctttggaggcgcggt 174  Q
    |||||||||| | ||||  | ||| ||||||||| |||||    
T  963286 aatttggcaagttgtggggtcttatctttggaggagcggt 963325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 127
Target Start/End: Original strand, 36801106 - 36801190
Alignment:
Q  43 aaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctac 127  Q
    |||||||||||||||||| ||||||| |||||||  | ||||| | |||||||||||||| ||| || |||||||  ||||||||    
T  36801106 aaaatatggagttaatttagcataaataggttcccttaaaagtttatatccttgcttggcaactgctgagggatcgtttacctac 36801190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 141
Target Start/End: Original strand, 7031055 - 7031146
Alignment:
Q  50 ggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaataatttgg 141  Q
    ||||||||||| |||||||||||||||| | ||| | ||||||||||||||||| ||  | |||||||  |||||||| |||  ||||||||    
T  7031055 ggagttaatttggcataaacaggttcctttaaaactttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttgg 7031146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 19890791 - 19890733
Alignment:
Q  39 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgc 97  Q
    |||||||||||||||||||| | |||||||||||||||| | ||||| || ||||||||    
T  19890791 catcaaaatatggagttaatctggcataaacaggttcctttaaaagtttccatccttgc 19890733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 168
Target Start/End: Complemental strand, 3140969 - 3140836
Alignment:
Q  35 gttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaat 134  Q
    ||||||||||||||||||||| |||| | | |||||||| ||| | ||||| |||||  |||||||||   | || ||||| | ||||||||| ||| |     
T  3140969 gttacatcaaaatatggagttgatttggtacaaacaggtgcctttgaaagtgtctatatttgcttggcatttactgagggaccggttacctactaaacaa 3140870  T
Q  135 aatttggcaaatcgtggcattttacctttggagg 168  Q
    |||||||||| ||||||  | ||| |||||||||    
T  3140869 aatttggcaagtcgtggggtcttatctttggagg 3140836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 148
Target Start/End: Complemental strand, 16179073 - 16178952
Alignment:
Q  27 cagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttaccta 126  Q
    |||||||| |||| ||||||| | |||||||||| |||||||||||| ||| | ||||| |||||  |||| ||||| ||  | | |||||   ||||||    
T  16179073 cagccccatttacgtcaaaatttagagttaatttggcataaacaggtacctcttaaagtatctatttttgcgtggcgcctgatgaaggatcgtctaccta 16178974  T
Q  127 caaaaaataatttggcaaatcg 148  Q
    | ||| | ||||||||||||||    
T  16178973 ctaaagagaatttggcaaatcg 16178952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 14 - 208
Target Start/End: Complemental strand, 13396526 - 13396332
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    ||||||||||||||||||||| ||||||||  ||||||||||||||| ||||||||| |||||| ||||||| |||||||||||||||||||| || ||     
T  13396526 gacatcacaggagcagccccaattacatcatcatatggagttaatttggcataaacaagttcctctcaaagtatctatccttgcttggcgactcctgaga 13396427  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggcatgttgaagatgt 208  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| || ||| | |||||||||||    
T  13396426 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgt 13396332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 41665371 - 41665565
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    ||||||||||||||||||||| ||||||||  ||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||| | || ||     
T  41665371 gacatcacaggagcagccccaattacatcatcatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgattcctaaga 41665470  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggcatgttgaagatgt 208  Q
    |||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||| ||| || ||| | |||||||||||    
T  41665471 gatcagttacctacaaaaaataatttggcaaaccatgacattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgt 41665565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 14 - 209
Target Start/End: Complemental strand, 9922739 - 9922544
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    |||||||||||||||||| || |||||||||||  |||||||||||| ||||| |||||||||| ||||||| ||||||||||| || |||||||| |||    
T  9922739 gacatcacaggagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttcctctcaaagtttctatccttgcatgacgacttctgagg 9922640  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggcatgttgaagatgtc 209  Q
    |||| ||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||| ||||||||| |||||| ||| |||| |||||||||    
T  9922639 gatcggttacctacaaaagataatttggcaaaccgtggcattttacctctggaggcgcggatgtgtgtttctggttgtgggaatgtagaagatgtc 9922544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 32266698 - 32266508
Alignment:
Q  18 tcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatc 117  Q
    ||||| ||||| || |||||||| || ||| |||||||||||| |||||||||||||||| ||||||| ||||||||||||||| ||||| | || ||||    
T  32266698 tcacaagagcaaccacagttacaccataatttggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggagacttttgagagatc 32266599  T
Q  118 agttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggcatgttgaagatgt 208  Q
     ||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||| || ||| | |||||||||||    
T  32266598 ggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgt 32266508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 14 - 175
Target Start/End: Complemental strand, 7924524 - 7924363
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    ||||||||||||||||||||||||||| || ||| |||| ||||||| |||||||||||| ||| ||||||||||||||||||||||||||||  | |||    
T  7924524 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 7924425  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggtt 175  Q
    |||| |||||||||||||  |||||||||||||||||||||| || || |||||| ||||||    
T  7924424 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggtt 7924363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 14 - 182
Target Start/End: Complemental strand, 8299941 - 8299773
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    ||||||||||||| ||||||| ||||| || ||| |||| ||||||| |||||||||||| ||| ||||||| |||||||||||||||||||| || |||    
T  8299941 gacatcacaggagtagccccaattacaccataatttggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgactactgagg 8299842  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtt 182  Q
    |||| |||||||||||||  |||||||||||||||||||||| || || |||||| ||| || ||||||    
T  8299841 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcgattatgtgtt 8299773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 14 - 208
Target Start/End: Complemental strand, 172241 - 172047
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    ||||||||||||||||  ||||||||| || || ||||| ||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| |||    
T  172241 gacatcacaggagcagaaccagttacaccataaaatggacttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 172142  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggcatgttgaagatgt 208  Q
    || | |||||| ||||||  |||||||| ||| |||| |||| || || |||||| |||||| ||||||| ||| || ||  |||| ||||||||    
T  172141 gaccggttacccacaaaacttaatttggtaaaccgtgacattctatctatggaggagcggttatgtgtttctggctgtggtaatgtcgaagatgt 172047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 208
Target Start/End: Complemental strand, 13200261 - 13200067
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    |||||||||||| || || ||  | |||||||||||||||||| ||| |||||||||||||||| | ||||| || |||||||||||||  ||  | |||    
T  13200261 gacatcacaggaacaacctcatgttcatcaaaatatggagttagtttggcataaacaggttcctctaaaagtttcaatccttgcttggcagctattgagg 13200162  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggcatgttgaagatgt 208  Q
    ||||  |||||||||||| | ||||||||| | ||  | ||| ||||| ||||||| ||||| ||||||  ||| || |||||||||||||||||    
T  13200161 gatcgtttacctacaaaatacaatttggcagagcgcagaattctacctatggaggctcggttttgtgttactgggtgtgggcatgttgaagatgt 13200067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 14 - 141
Target Start/End: Complemental strand, 20824434 - 20824307
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    |||||||||||| || || ||  | |||||||||||||||||||||| |||||||||||||||| | ||||| ||||||||||||||||||||  | |||    
T  20824434 gacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagg 20824335  T
Q  114 gatcagttacctacaaaaaataatttgg 141  Q
    ||||  |||||||| |||  ||||||||    
T  20824334 gatcgcttacctactaaatctaatttgg 20824307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 39 - 127
Target Start/End: Complemental strand, 17699595 - 17699507
Alignment:
Q  39 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctac 127  Q
    |||||||||||||||||||||| |||||||||||||||  | ||||| |||||||||||||||||||| || |||||||  ||||||||    
T  17699595 catcaaaatatggagttaatttggcataaacaggttcccttaaaagtttctatccttgcttggcgactgctgagggatcgtttacctac 17699507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 14 - 127
Target Start/End: Complemental strand, 37434270 - 37434157
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    |||||||||||| || || ||  | |||||||||||||||||||||| ||||||||| |||||| | ||||||||||| ||||||||||||||  | |||    
T  37434270 gacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacatgttcctttaaaagtctctattcttgcttggcgactgttgagg 37434171  T
Q  114 gatcagttacctac 127  Q
    ||||  ||||||||    
T  37434170 gatcgtttacctac 37434157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 2170480 - 2170389
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgac 105  Q
    |||||||||||| || || ||  | |||||||||||||||||||| | |||||||||||||||| | ||||| |||||||||||||||||||    
T  2170480 gacatcacaggaacaacctcatgttcatcaaaatatggagttaatctggcataaacaggttcctttaaaagtttctatccttgcttggcgac 2170389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 75 - 208
Target Start/End: Complemental strand, 2529963 - 2529830
Alignment:
Q  75 cctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggt 174  Q
    |||| |||||| || |||||||||||||| ||  | |||||||  |||||||||||| | ||||||| | ||||||| ||| ||| ||||||||| ||||    
T  2529963 cctaccaaagtttcaatccttgcttggcggctattgagggatcgcttacctacaaaatacaatttggtagatcgtggaattctacttttggaggctcggt 2529864  T
Q  175 tgtgtgtttttggttgcgggcatgttgaagatgt 208  Q
    | ||||||   || || |||||||||||||||||    
T  2529863 tttgtgttacagggtgtgggcatgttgaagatgt 2529830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 44 - 179
Target Start/End: Complemental strand, 5181778 - 5181643
Alignment:
Q  44 aaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaataatttggca 143  Q
    |||||||||| |||||| |||||||||||| ||| | ||||||| ||| |||| |||||| |  || |||||||| ||||| |||||| ||||||||  |    
T  5181778 aaatatggagataatttggcataaacaggtgcctctaaaagtctatattcttgtttggcggcggctgagggatcatttaccaacaaaagataatttgata 5181679  T
Q  144 aatcgtggcattttacctttggaggcgcggttgtgt 179  Q
    || ||| |  |  | |||||||||||||||||||||    
T  5181678 aaccgtcgagtcattcctttggaggcgcggttgtgt 5181643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 43270563 - 43270496
Alignment:
Q  39 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgact 106  Q
    ||||||||||||||||| || | |||||||||||||||| | ||||| ||||||||| ||||||||||    
T  43270563 catcaaaatatggagttcatctggcataaacaggttcctttaaaagtttctatccttacttggcgact 43270496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 180
Target Start/End: Original strand, 34137013 - 34137131
Alignment:
Q  62 gcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaataatttggcaaatcgtggcattttacct 161  Q
    |||||||||||| ||| ||||||||||||| ||||||||||| ||| | | |||||  |||||||| ||| | ||||||||||| || || ||  | |||    
T  34137013 gcataaacaggtacctctcaaagtctctattcttgcttggcggcttatgatggatcgtttacctacgaaagaaaatttggcaaaccgcggtatcattcct 34137112  T
Q  162 ttggaggcgcggttgtgtg 180  Q
     |||||| |||||||||||    
T  34137113 gtggaggggcggttgtgtg 34137131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 169
Target Start/End: Original strand, 13879610 - 13879644
Alignment:
Q  135 aatttggcaaatcgtggcattttacctttggaggc 169  Q
    |||||||||||||||||||||||||| ||||||||    
T  13879610 aatttggcaaatcgtggcattttaccgttggaggc 13879644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 124; Significance: 6e-64; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 14 - 209
Target Start/End: Complemental strand, 41207154 - 41206959
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    |||||| ||||| || || |||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||| |||    
T  41207154 gacatcgcaggaacatcctcagttacatccaaatatggagttaatttggcataaacaggttcctctcaaagtctctatccttgcttggcggcttctgagg 41207055  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggcatgttgaagatgtc 209  Q
    |||| ||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||   ||| |||||||| ||||||||||||    
T  41207054 gatcggttacctacaaaaaataatttggcaaatcgtggcattattcccttggaggcgcggttgtgtgtcactggatgcgggcacgttgaagatgtc 41206959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 14 - 183
Target Start/End: Complemental strand, 4552307 - 4552138
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    ||||||||||||||||||||||||||| || |||||||| ||||||| ||||||| |||||||| | ||||| ||||||||||||||||||||||| |||    
T  4552307 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaataggttcctcttaaagtatctatccttgcttggcgacttctgagg 4552208  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgttt 183  Q
    |||| |||||||||||||  |||||||||||||||||||||| || || |||||| |||||| |||||||    
T  4552207 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgttt 4552138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 39 - 208
Target Start/End: Complemental strand, 15917767 - 15917598
Alignment:
Q  39 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaataatt 138  Q
    ||||||||||| |||||||||| ||||||| |||||||| | ||||||| ||||||||||||| |||| || |||||||  ||||||||||||  |||||    
T  15917767 catcaaaatattgagttaatttcgcataaataggttcctctgaaagtctgtatccttgcttggggactgctgagggatcgtttacctacaaaagttaatt 15917668  T
Q  139 tggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggcatgttgaagatgt 208  Q
    ||||||||||||| ||| | |||||||| | ||||||||||||   |||||| |||||||||||||||||    
T  15917667 tggcaaatcgtggtattattcctttggaagtgcggttgtgtgtcactggttgtgggcatgttgaagatgt 15917598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 40 - 208
Target Start/End: Complemental strand, 12645648 - 12645480
Alignment:
Q  40 atcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaataattt 139  Q
    ||||||||||||||||||||| ||||||||||||| || | ||||| || |||||||||||||| ||  | |||||||  |||||||||||| | |||||    
T  12645648 atcaaaatatggagttaatttggcataaacaggtttctctaaaagtttcaatccttgcttggcggctattgagggatcgcttacctacaaaatacaattt 12645549  T
Q  140 ggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggcatgttgaagatgt 208  Q
    | || ||||  | ||| ||||||||||||| ||||| ||||||   || || |||||||||||||||||    
T  12645548 gacagatcgcagaattctacctttggaggctcggttttgtgttacagggtgtgggcatgttgaagatgt 12645480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 44 - 181
Target Start/End: Original strand, 17764994 - 17765131
Alignment:
Q  44 aaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaataatttggca 143  Q
    ||||||||||||||| | ||||||||||| |||| | ||||||||||| ||||||||||| ||  | |||||||| |||||||| |||   |||||||||    
T  17764994 aaatatggagttaatatggcataaacaggctcctcttaaagtctctattcttgcttggcggctattgagggatcatttacctacgaaagcaaatttggca 17765093  T
Q  144 aatcgtggcattttacctttggaggcgcggttgtgtgt 181  Q
    || ||||| ||  | |||||||||||||||||||||||    
T  17765094 aaccgtggtatcattcctttggaggcgcggttgtgtgt 17765131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 208
Target Start/End: Complemental strand, 28252858 - 28252664
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    |||||||||||| ||||| |||||||||  |  |||||| ||||||| |||||||||||| ||| | ||||| ||||| ||||||||||| ||| | |||    
T  28252858 gacatcacaggaacagcctcagttacattcatctatggaattaatttggcataaacaggtacctctaaaagtatctattcttgcttggcggcttttgagg 28252759  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggcatgttgaagatgt 208  Q
    ||||  |||||||| ||    ||||||||||| | ||||||| | | | |||||| |||||| |||||||  ||||| || |||| |||||||||    
T  28252758 gatcgcttacctacgaagggaaatttggcaaaccatggcattattcatatggaggggcggttatgtgtttccggttgtggtcatgatgaagatgt 28252664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 10999978 - 11000040
Alignment:
Q  39 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttgg 101  Q
    |||||||||||||||||||| |  |||||||||||| || | ||||| |||||||||||||||    
T  10999978 catcaaaatatggagttaatctgccataaacaggtttctttaaaagtttctatccttgcttgg 11000040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 127
Target Start/End: Complemental strand, 14439865 - 14439777
Alignment:
Q  39 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctac 127  Q
    ||||||| |||||||||||| | |||||||||||||||| | ||||| |||||| | ||||| |||||  | |||||||  ||||||||    
T  14439865 catcaaactatggagttaatctggcataaacaggttcctttaaaagtttctatcttggcttgacgactgttgagggatcgtttacctac 14439777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 38604376 - 38604570
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    |||||||||||| || ||  | || |||||||||||||||||||| | ||||||||| || ||| | ||||| || |||||||| ||||  ||  | ||     
T  38604376 gacatcacaggaacaacctaattttcatcaaaatatggagttaatctggcataaacaagtacctctaaaagtttcaatccttgcatggctgctgttaaga 38604475  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggcatgttgaagatgt 208  Q
    ||||  |||||||||| |   ||||||||| ||||||||||  | |   ||||||| ||||| ||||| |  || || |||||||||||||||||    
T  38604476 gatcgtttacctacaatagtcaatttggcatatcgtggcatccttctcatggaggctcggttatgtgtctcaggctgtgggcatgttgaagatgt 38604570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 3e-56; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 14 - 208
Target Start/End: Complemental strand, 51052618 - 51052424
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    ||||||||||||||||||||||||||| || |||||||| ||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| |||    
T  51052618 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 51052519  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggcatgttgaagatgt 208  Q
    |||| |||||||||||||  |||||||||||||||||||||| || || |||||| |||||| ||||||| ||| || |||  ||| ||||||||    
T  51052518 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgt 51052424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 11909107 - 11909301
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    ||||||||||||||||||||||||||| || |||||||| ||||||| |||||||||||||||| ||||||| |||||| |||||||||||||||| |||    
T  11909107 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggttcctctcaaagtatctatcattgcttggcgacttctgagg 11909206  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggcatgttgaagatgt 208  Q
    |||| |||||||||||||  |||||||||||||||||||||| || || |||||| |||| | ||||||| ||| || |||  ||| ||||||||    
T  11909207 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggctatgtgtttctggatgtgggattgtcgaagatgt 11909301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 14 - 168
Target Start/End: Complemental strand, 35541187 - 35541033
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    ||||||||||||||||||||||||||| || |||||||| ||||||| |||||||||||| ||| ||||||| |||||||||||||||||||| || |||    
T  35541187 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgactactgagg 35541088  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggagg 168  Q
    |||| |||||| |||||| ||||||||||||||||||||||| || || ||||||    
T  35541087 gatcggttacccacaaaacataatttggcaaatcgtggcattctatctgtggagg 35541033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 14 - 175
Target Start/End: Complemental strand, 6050741 - 6050580
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    ||||||||||||||||||||||||||| || ||| |||| ||||||| |||||||||||| ||| ||||||||||||||||||||||||||||  | |||    
T  6050741 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 6050642  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggtt 175  Q
    |||| |||||||||||||  ||||||||||||| |||||||| || || |||||| ||||||    
T  6050641 gatcggttacctacaaaacttaatttggcaaattgtggcattctatctgtggaggagcggtt 6050580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 47623079 - 47623271
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    |||||||||||| || || |||||||||  | ||||||| ||||||| |||||||||||| ||| ||||||| ||||| ||||||||||| ||| | |||    
T  47623079 gacatcacaggaacaacctcagttacattcatatatggaattaatttggcataaacaggtacctctcaaagtatctattcttgcttggcggcttttgagg 47623178  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggcatgttgaagatgt 208  Q
    || |  |||||||| ||    ||||||||||| |||| |||| | ||| |||||| |||||  ||||||| |||||| ||||||| |||||||||    
T  47623179 gaccgcttacctacgaagggaaatttggcaaaccgtgacattattcctatggaggggcggt--tgtgtttctggttgtgggcatgatgaagatgt 47623271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 39 - 141
Target Start/End: Original strand, 16917836 - 16917938
Alignment:
Q  39 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaataatt 138  Q
    |||||||||||||||||||||| |||||||||||||||| | ||||| ||||||||||||||||||||  | |||||||  |||||||| |||  |||||    
T  16917836 catcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcgcttacctactaaatctaatt 16917935  T
Q  139 tgg 141  Q
    |||    
T  16917936 tgg 16917938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 43388480 - 43388415
Alignment:
Q  39 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcga 104  Q
    |||||||||||||||||||||| |||||||||||||||| | ||||| ||||||||||||||||||    
T  43388480 catcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcga 43388415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 28351852 - 28351776
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctcta 90  Q
    |||||||| |||| | ||||| | ||||||||||||||||||||||| |||||||| ||| ||| | ||||||||||    
T  28351852 gacatcactggagtatccccattcacatcaaaatatggagttaatttggcataaaccggtccctctgaaagtctcta 28351776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 37191237 - 37191301
Alignment:
Q  39 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcg 103  Q
    |||||||||||||||||||| | |||||||| ||||| | | ||||| | |||||||||||||||    
T  37191237 catcaaaatatggagttaatctggcataaactggttcatttaaaagtttatatccttgcttggcg 37191301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 14 - 208
Target Start/End: Complemental strand, 3390 - 3196
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    ||||||||||||||| ||| ||||||| || |||||||||||||||| |||||||||||||||| | ||||| ||||||||||||||| ||||| | ||     
T  3390 gacatcacaggagcaaccctagttacaccataatatggagttaatttggcataaacaggttcctcttaaagtttctatccttgcttggagacttttgaga 3291  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggcatgttgaagatgt 208  Q
    |||| ||||||||| ||||  ||||||||||| | ||||||||||||||||||||||||||||||||||| ||| || ||| | |||||||||||    
T  3290 gatcggttacctacgaaaagcaatttggcaaaccatggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgt 3196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 11207 - 11401
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    |||||||||||||||| ||||| |||| || ||| |||| ||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| |||    
T  11207 gacatcacaggagcagacccagctacaccataatctggacttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctcagg 11306  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggcatgttgaagatgt 208  Q
    |||| |||||||||||||  |||||||||||| ||||||||| || || |||||| |||||| ||||||| ||| || ||| |||| ||| ||||    
T  11307 gatcggttacctacaaaacttaatttggcaaaccgtggcattctatctgtggaggagcggttatgtgtttctggatgtgggaatgtcgaaaatgt 11401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 14 - 175
Target Start/End: Original strand, 105845 - 106006
Alignment:
Q  14 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 113  Q
    ||||||||||||||||||||||||||| || ||| |||| ||||||| |||||||||||| ||| ||||||||||||||||||||||||||||  | |||    
T  105845 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 105944  T
Q  114 gatcagttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggtt 175  Q
    |||| |||||||||||||  |||||||||||||||||||||| || || |||||| ||||||    
T  105945 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggtt 106006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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